Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpmG and MCAODC_06145 are separated by 97 nucleotides MCAODC_06145 and coaD are separated by 38 nucleotides coaD and waaA are separated by 7 nucleotides
MCAODC_06140: rpmG - 50S ribosomal protein L33, at 1,230,895 to 1,231,062
rpmG
MCAODC_06145: MCAODC_06145 - Formamidopyrimidine-DNA glycosylase, at 1,231,160 to 1,231,969
_06145
MCAODC_06150: coaD - pantetheine-phosphate adenylyltransferase, at 1,232,008 to 1,232,487
coaD
MCAODC_06155: waaA - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 1,232,495 to 1,233,772
waaA
Position (kb)
1232
1233 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1231.127 kb on + strand at 1231.127 kb on + strand at 1231.128 kb on - strand at 1231.159 kb on + strand at 1231.159 kb on + strand at 1231.159 kb on + strand at 1231.159 kb on + strand at 1231.159 kb on + strand at 1231.159 kb on + strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.160 kb on - strand at 1231.200 kb on + strand at 1231.283 kb on + strand, within MCAODC_06145 at 1231.283 kb on + strand, within MCAODC_06145 at 1231.284 kb on - strand, within MCAODC_06145 at 1231.284 kb on - strand, within MCAODC_06145 at 1231.284 kb on - strand, within MCAODC_06145 at 1231.287 kb on - strand, within MCAODC_06145 at 1231.290 kb on + strand, within MCAODC_06145 at 1231.291 kb on - strand, within MCAODC_06145 at 1231.327 kb on + strand, within MCAODC_06145 at 1231.331 kb on + strand, within MCAODC_06145 at 1231.331 kb on + strand, within MCAODC_06145 at 1231.332 kb on - strand, within MCAODC_06145 at 1231.332 kb on - strand, within MCAODC_06145 at 1231.363 kb on + strand, within MCAODC_06145 at 1231.363 kb on + strand, within MCAODC_06145 at 1231.364 kb on - strand, within MCAODC_06145 at 1231.364 kb on - strand, within MCAODC_06145 at 1231.364 kb on - strand, within MCAODC_06145 at 1231.364 kb on - strand, within MCAODC_06145 at 1231.472 kb on + strand, within MCAODC_06145 at 1231.529 kb on - strand, within MCAODC_06145 at 1231.529 kb on - strand, within MCAODC_06145 at 1231.562 kb on - strand, within MCAODC_06145 at 1231.583 kb on + strand, within MCAODC_06145 at 1231.583 kb on + strand, within MCAODC_06145 at 1231.583 kb on + strand, within MCAODC_06145 at 1231.584 kb on - strand, within MCAODC_06145 at 1231.584 kb on - strand, within MCAODC_06145 at 1231.622 kb on - strand, within MCAODC_06145 at 1231.622 kb on - strand, within MCAODC_06145 at 1231.666 kb on + strand, within MCAODC_06145 at 1231.666 kb on + strand, within MCAODC_06145 at 1231.666 kb on + strand, within MCAODC_06145 at 1231.666 kb on + strand, within MCAODC_06145 at 1231.666 kb on + strand, within MCAODC_06145 at 1231.666 kb on + strand, within MCAODC_06145 at 1231.667 kb on - strand, within MCAODC_06145 at 1231.670 kb on + strand, within MCAODC_06145 at 1231.670 kb on + strand, within MCAODC_06145 at 1231.670 kb on + strand, within MCAODC_06145 at 1231.671 kb on - strand, within MCAODC_06145 at 1231.671 kb on - strand, within MCAODC_06145 at 1231.752 kb on + strand, within MCAODC_06145 at 1231.753 kb on - strand, within MCAODC_06145 at 1231.766 kb on - strand, within MCAODC_06145 at 1231.801 kb on + strand, within MCAODC_06145 at 1231.801 kb on + strand, within MCAODC_06145 at 1231.801 kb on + strand, within MCAODC_06145 at 1231.802 kb on - strand, within MCAODC_06145 at 1231.834 kb on + strand, within MCAODC_06145 at 1231.835 kb on - strand, within MCAODC_06145 at 1231.835 kb on - strand, within MCAODC_06145 at 1231.835 kb on - strand, within MCAODC_06145 at 1231.869 kb on - strand, within MCAODC_06145 at 1231.903 kb on + strand at 1231.921 kb on + strand at 1231.946 kb on + strand at 1231.967 kb on + strand at 1231.967 kb on + strand at 1231.968 kb on - strand at 1231.968 kb on - strand at 1231.991 kb on - strand at 1231.991 kb on - strand at 1231.991 kb on - strand at 1231.991 kb on - strand at 1232.003 kb on - strand at 1232.015 kb on - strand at 1232.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,231,127 + -1.2 1,231,127 + -1.2 1,231,128 - -1.6 1,231,159 + +1.1 1,231,159 + +0.1 1,231,159 + +0.0 1,231,159 + -0.8 1,231,159 + +0.7 1,231,159 + +0.9 1,231,160 - +0.4 1,231,160 - -0.7 1,231,160 - -0.2 1,231,160 - -1.8 1,231,160 - +0.7 1,231,160 - +0.1 1,231,160 - -1.2 1,231,160 - -0.7 1,231,160 - +1.7 1,231,160 - +0.2 1,231,160 - +0.1 1,231,160 - -0.3 1,231,160 - +0.0 1,231,160 - +2.8 1,231,160 - -0.3 1,231,160 - +0.7 1,231,160 - -0.5 1,231,160 - -0.9 1,231,160 - +1.2 1,231,200 + -1.3 1,231,283 + MCAODC_06145 0.15 -2.2 1,231,283 + MCAODC_06145 0.15 -0.9 1,231,284 - MCAODC_06145 0.15 +0.6 1,231,284 - MCAODC_06145 0.15 +0.2 1,231,284 - MCAODC_06145 0.15 -1.1 1,231,287 - MCAODC_06145 0.16 -0.9 1,231,290 + MCAODC_06145 0.16 +0.5 1,231,291 - MCAODC_06145 0.16 -1.4 1,231,327 + MCAODC_06145 0.21 -0.1 1,231,331 + MCAODC_06145 0.21 -0.2 1,231,331 + MCAODC_06145 0.21 +0.5 1,231,332 - MCAODC_06145 0.21 -0.2 1,231,332 - MCAODC_06145 0.21 -0.7 1,231,363 + MCAODC_06145 0.25 +0.4 1,231,363 + MCAODC_06145 0.25 +0.2 1,231,364 - MCAODC_06145 0.25 +0.4 1,231,364 - MCAODC_06145 0.25 -0.7 1,231,364 - MCAODC_06145 0.25 +0.6 1,231,364 - MCAODC_06145 0.25 +1.5 1,231,472 + MCAODC_06145 0.39 +0.0 1,231,529 - MCAODC_06145 0.46 -0.0 1,231,529 - MCAODC_06145 0.46 -2.3 1,231,562 - MCAODC_06145 0.50 -0.4 1,231,583 + MCAODC_06145 0.52 +2.2 1,231,583 + MCAODC_06145 0.52 -1.7 1,231,583 + MCAODC_06145 0.52 -0.8 1,231,584 - MCAODC_06145 0.52 +0.9 1,231,584 - MCAODC_06145 0.52 +0.1 1,231,622 - MCAODC_06145 0.57 +0.9 1,231,622 - MCAODC_06145 0.57 -0.3 1,231,666 + MCAODC_06145 0.62 +0.3 1,231,666 + MCAODC_06145 0.62 -0.3 1,231,666 + MCAODC_06145 0.62 +0.8 1,231,666 + MCAODC_06145 0.62 +1.8 1,231,666 + MCAODC_06145 0.62 +0.5 1,231,666 + MCAODC_06145 0.62 +1.1 1,231,667 - MCAODC_06145 0.63 +0.4 1,231,670 + MCAODC_06145 0.63 -0.2 1,231,670 + MCAODC_06145 0.63 +2.7 1,231,670 + MCAODC_06145 0.63 +0.9 1,231,671 - MCAODC_06145 0.63 +1.3 1,231,671 - MCAODC_06145 0.63 +0.4 1,231,752 + MCAODC_06145 0.73 +0.2 1,231,753 - MCAODC_06145 0.73 +0.2 1,231,766 - MCAODC_06145 0.75 +0.8 1,231,801 + MCAODC_06145 0.79 +0.3 1,231,801 + MCAODC_06145 0.79 -0.9 1,231,801 + MCAODC_06145 0.79 -0.4 1,231,802 - MCAODC_06145 0.79 +0.7 1,231,834 + MCAODC_06145 0.83 +1.9 1,231,835 - MCAODC_06145 0.83 -0.3 1,231,835 - MCAODC_06145 0.83 -0.7 1,231,835 - MCAODC_06145 0.83 -0.3 1,231,869 - MCAODC_06145 0.88 -1.2 1,231,903 + +0.4 1,231,921 + +0.9 1,231,946 + +0.1 1,231,967 + +0.2 1,231,967 + +0.1 1,231,968 - -0.2 1,231,968 - -0.5 1,231,991 - -0.0 1,231,991 - -1.3 1,231,991 - +0.5 1,231,991 - -0.5 1,232,003 - -1.4 1,232,015 - -0.0 1,232,488 - +0.7
Or see this region's nucleotide sequence