Strain Fitness in Escherichia coli ECRC101 around MCAODC_05680

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_05670 and MCAODC_05675 are separated by 147 nucleotidesMCAODC_05675 and MCAODC_05680 are separated by 277 nucleotidesMCAODC_05680 and MCAODC_05685 are separated by 15 nucleotides MCAODC_05670: MCAODC_05670 - hypothetical protein, at 1,145,157 to 1,145,810 _05670 MCAODC_05675: MCAODC_05675 - hypothetical protein, at 1,145,958 to 1,146,440 _05675 MCAODC_05680: MCAODC_05680 - hypothetical protein, at 1,146,718 to 1,147,032 _05680 MCAODC_05685: MCAODC_05685 - hypothetical protein, at 1,147,048 to 1,148,151 _05685 Position (kb) 1146 1147 1148Strain fitness (log2 ratio) -2 -1 0 1 2at 1145.815 kb on + strandat 1146.452 kb on + strandat 1146.464 kb on - strandat 1146.545 kb on - strandat 1146.551 kb on + strandat 1146.555 kb on - strandat 1146.599 kb on + strandat 1146.714 kb on + strandat 1146.718 kb on - strandat 1147.023 kb on + strandat 1147.054 kb on - strandat 1147.191 kb on + strand, within MCAODC_05685at 1147.291 kb on + strand, within MCAODC_05685at 1147.678 kb on - strand, within MCAODC_05685at 1147.680 kb on - strand, within MCAODC_05685at 1147.827 kb on + strand, within MCAODC_05685at 1147.828 kb on - strand, within MCAODC_05685at 1147.976 kb on - strand, within MCAODC_05685

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,145,815 + +0.6
1,146,452 + -1.0
1,146,464 - -0.1
1,146,545 - -0.8
1,146,551 + -0.3
1,146,555 - -0.1
1,146,599 + +2.7
1,146,714 + -0.6
1,146,718 - +1.2
1,147,023 + -0.2
1,147,054 - +0.1
1,147,191 + MCAODC_05685 0.13 +0.8
1,147,291 + MCAODC_05685 0.22 +1.7
1,147,678 - MCAODC_05685 0.57 +2.7
1,147,680 - MCAODC_05685 0.57 +0.1
1,147,827 + MCAODC_05685 0.71 -1.1
1,147,828 - MCAODC_05685 0.71 -0.1
1,147,976 - MCAODC_05685 0.84 -2.0

Or see this region's nucleotide sequence