Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihM and yihL are separated by 7 nucleotides yihL and typA are separated by 216 nucleotides
MCAODC_04575: yihM - Uncharacterized protein YihM, at 928,206 to 929,186
yihM
MCAODC_04580: yihL - Uncharacterized HTH-type transcriptional regulator YihL, at 929,194 to 929,904
yihL
MCAODC_04590: typA - ribosome-dependent GTPase TypA, at 930,121 to 931,944
typA
Position (kb) 929
930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 928.251 kb on + strand at 928.373 kb on + strand, within yihM at 928.373 kb on + strand, within yihM at 928.409 kb on - strand, within yihM at 928.409 kb on - strand, within yihM at 928.411 kb on + strand, within yihM at 928.412 kb on - strand, within yihM at 928.436 kb on - strand, within yihM at 928.472 kb on + strand, within yihM at 928.473 kb on - strand, within yihM at 928.473 kb on - strand, within yihM at 928.473 kb on - strand, within yihM at 928.483 kb on - strand, within yihM at 928.485 kb on + strand, within yihM at 928.485 kb on + strand, within yihM at 928.502 kb on + strand, within yihM at 928.502 kb on + strand, within yihM at 928.521 kb on - strand, within yihM at 928.529 kb on + strand, within yihM at 928.529 kb on + strand, within yihM at 928.587 kb on - strand, within yihM at 928.720 kb on - strand, within yihM at 928.765 kb on + strand, within yihM at 928.810 kb on - strand, within yihM at 928.810 kb on - strand, within yihM at 928.810 kb on - strand, within yihM at 928.895 kb on + strand, within yihM at 928.896 kb on - strand, within yihM at 928.931 kb on + strand, within yihM at 928.932 kb on - strand, within yihM at 929.040 kb on + strand, within yihM at 929.040 kb on + strand, within yihM at 929.125 kb on - strand at 929.176 kb on - strand at 929.234 kb on + strand at 929.242 kb on - strand at 929.242 kb on - strand at 929.243 kb on + strand at 929.257 kb on - strand at 929.290 kb on + strand, within yihL at 929.291 kb on - strand, within yihL at 929.324 kb on + strand, within yihL at 929.324 kb on + strand, within yihL at 929.325 kb on - strand, within yihL at 929.394 kb on - strand, within yihL at 929.469 kb on + strand, within yihL at 929.469 kb on + strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.472 kb on - strand, within yihL at 929.472 kb on - strand, within yihL at 929.493 kb on + strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.679 kb on + strand, within yihL at 929.710 kb on - strand, within yihL at 929.772 kb on + strand, within yihL at 929.772 kb on + strand, within yihL at 929.773 kb on - strand, within yihL at 929.773 kb on - strand, within yihL at 929.778 kb on + strand, within yihL at 929.881 kb on + strand at 929.881 kb on + strand at 929.910 kb on - strand at 929.942 kb on + strand at 929.943 kb on - strand at 929.948 kb on + strand at 929.948 kb on + strand at 929.949 kb on - strand at 929.969 kb on + strand at 929.970 kb on - strand at 929.977 kb on + strand at 929.977 kb on + strand at 929.977 kb on + strand at 929.991 kb on + strand at 929.991 kb on + strand at 929.991 kb on + strand at 929.992 kb on - strand at 929.992 kb on - strand at 930.010 kb on + strand at 930.010 kb on + strand at 930.011 kb on - strand at 930.019 kb on - strand at 930.031 kb on - strand at 930.031 kb on - strand at 930.032 kb on + strand at 930.032 kb on + strand at 930.032 kb on + strand at 930.033 kb on - strand at 930.041 kb on + strand at 930.104 kb on - strand at 930.109 kb on + strand at 930.110 kb on - strand at 930.180 kb on + strand at 930.187 kb on - strand at 930.211 kb on + strand at 930.212 kb on - strand at 930.355 kb on - strand, within typA at 930.420 kb on + strand, within typA at 930.462 kb on + strand, within typA at 930.484 kb on + strand, within typA at 930.484 kb on + strand, within typA at 930.634 kb on + strand, within typA at 930.634 kb on + strand, within typA at 930.635 kb on - strand, within typA at 930.635 kb on - strand, within typA at 930.678 kb on + strand, within typA at 930.700 kb on + strand, within typA at 930.760 kb on - strand, within typA at 930.904 kb on + strand, within typA
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 928,251 + +0.6 928,373 + yihM MCAODC_04575 0.17 -1.0 928,373 + yihM MCAODC_04575 0.17 -0.2 928,409 - yihM MCAODC_04575 0.21 -0.3 928,409 - yihM MCAODC_04575 0.21 +0.1 928,411 + yihM MCAODC_04575 0.21 +0.1 928,412 - yihM MCAODC_04575 0.21 -0.9 928,436 - yihM MCAODC_04575 0.23 +0.5 928,472 + yihM MCAODC_04575 0.27 -0.3 928,473 - yihM MCAODC_04575 0.27 -1.4 928,473 - yihM MCAODC_04575 0.27 +1.0 928,473 - yihM MCAODC_04575 0.27 +0.9 928,483 - yihM MCAODC_04575 0.28 +1.7 928,485 + yihM MCAODC_04575 0.28 -2.0 928,485 + yihM MCAODC_04575 0.28 -0.8 928,502 + yihM MCAODC_04575 0.30 +1.2 928,502 + yihM MCAODC_04575 0.30 -0.6 928,521 - yihM MCAODC_04575 0.32 +0.7 928,529 + yihM MCAODC_04575 0.33 +0.5 928,529 + yihM MCAODC_04575 0.33 -2.2 928,587 - yihM MCAODC_04575 0.39 -0.7 928,720 - yihM MCAODC_04575 0.52 +0.1 928,765 + yihM MCAODC_04575 0.57 -0.4 928,810 - yihM MCAODC_04575 0.62 +0.1 928,810 - yihM MCAODC_04575 0.62 -0.5 928,810 - yihM MCAODC_04575 0.62 +0.8 928,895 + yihM MCAODC_04575 0.70 -0.2 928,896 - yihM MCAODC_04575 0.70 +0.0 928,931 + yihM MCAODC_04575 0.74 +1.2 928,932 - yihM MCAODC_04575 0.74 +0.7 929,040 + yihM MCAODC_04575 0.85 +0.2 929,040 + yihM MCAODC_04575 0.85 +0.8 929,125 - -0.3 929,176 - -1.0 929,234 + -0.7 929,242 - -0.7 929,242 - -0.9 929,243 + +0.5 929,257 - +0.7 929,290 + yihL MCAODC_04580 0.14 -0.3 929,291 - yihL MCAODC_04580 0.14 +0.9 929,324 + yihL MCAODC_04580 0.18 +0.5 929,324 + yihL MCAODC_04580 0.18 -0.5 929,325 - yihL MCAODC_04580 0.18 -0.4 929,394 - yihL MCAODC_04580 0.28 +0.0 929,469 + yihL MCAODC_04580 0.39 -0.5 929,469 + yihL MCAODC_04580 0.39 +0.1 929,470 - yihL MCAODC_04580 0.39 -0.3 929,470 - yihL MCAODC_04580 0.39 -0.3 929,470 - yihL MCAODC_04580 0.39 -1.3 929,470 - yihL MCAODC_04580 0.39 +0.6 929,472 - yihL MCAODC_04580 0.39 -1.5 929,472 - yihL MCAODC_04580 0.39 +1.3 929,493 + yihL MCAODC_04580 0.42 -0.0 929,494 - yihL MCAODC_04580 0.42 -0.2 929,494 - yihL MCAODC_04580 0.42 +0.1 929,494 - yihL MCAODC_04580 0.42 +0.6 929,494 - yihL MCAODC_04580 0.42 +0.0 929,679 + yihL MCAODC_04580 0.68 +0.5 929,710 - yihL MCAODC_04580 0.73 -1.2 929,772 + yihL MCAODC_04580 0.81 +1.7 929,772 + yihL MCAODC_04580 0.81 -0.9 929,773 - yihL MCAODC_04580 0.81 -1.2 929,773 - yihL MCAODC_04580 0.81 +0.1 929,778 + yihL MCAODC_04580 0.82 -0.2 929,881 + -0.3 929,881 + +0.3 929,910 - +0.4 929,942 + +0.9 929,943 - -0.6 929,948 + +0.1 929,948 + +1.7 929,949 - -1.0 929,969 + -0.3 929,970 - -1.0 929,977 + -0.2 929,977 + -0.6 929,977 + -1.4 929,991 + -1.0 929,991 + -0.3 929,991 + -2.7 929,992 - +3.3 929,992 - -0.0 930,010 + -0.4 930,010 + +0.8 930,011 - -0.2 930,019 - -0.6 930,031 - -0.3 930,031 - +2.3 930,032 + -1.4 930,032 + -2.1 930,032 + +2.0 930,033 - -1.0 930,041 + -1.8 930,104 - +0.5 930,109 + -0.8 930,110 - -0.2 930,180 + -0.3 930,187 - -1.2 930,211 + -0.9 930,212 - -2.8 930,355 - typA MCAODC_04590 0.13 -0.9 930,420 + typA MCAODC_04590 0.16 -0.6 930,462 + typA MCAODC_04590 0.19 -4.1 930,484 + typA MCAODC_04590 0.20 -1.6 930,484 + typA MCAODC_04590 0.20 -2.0 930,634 + typA MCAODC_04590 0.28 +0.1 930,634 + typA MCAODC_04590 0.28 -3.2 930,635 - typA MCAODC_04590 0.28 +0.1 930,635 - typA MCAODC_04590 0.28 -2.4 930,678 + typA MCAODC_04590 0.31 -3.3 930,700 + typA MCAODC_04590 0.32 -0.1 930,760 - typA MCAODC_04590 0.35 -1.2 930,904 + typA MCAODC_04590 0.43 -0.9
Or see this region's nucleotide sequence