Strain Fitness in Escherichia coli ECRC101 around MCAODC_02130

Experiment: EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfimE and fimB are separated by 477 nucleotides MCAODC_02125: fimE - type 1 fimbria switch DNA invertase FimE, at 418,076 to 418,672 fimE MCAODC_02130: fimB - type 1 fimbria switch DNA invertase FimB, at 419,150 to 419,752 fimB Position (kb) 419 420Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.150 kb on + strand, within fimEat 418.160 kb on - strand, within fimEat 418.160 kb on - strand, within fimEat 418.161 kb on + strand, within fimEat 418.161 kb on + strand, within fimEat 418.162 kb on - strand, within fimEat 418.166 kb on + strand, within fimEat 418.167 kb on - strand, within fimEat 418.167 kb on - strand, within fimEat 418.172 kb on - strand, within fimEat 418.208 kb on + strand, within fimEat 418.208 kb on + strand, within fimEat 418.259 kb on + strand, within fimEat 418.260 kb on - strand, within fimEat 418.264 kb on + strand, within fimEat 418.265 kb on - strand, within fimEat 418.265 kb on - strand, within fimEat 418.265 kb on - strand, within fimEat 418.363 kb on + strand, within fimEat 418.364 kb on - strand, within fimEat 418.367 kb on + strand, within fimEat 418.367 kb on + strand, within fimEat 418.368 kb on - strand, within fimEat 418.409 kb on + strand, within fimEat 418.410 kb on - strand, within fimEat 418.546 kb on + strand, within fimEat 418.550 kb on - strand, within fimEat 418.579 kb on + strand, within fimEat 418.579 kb on + strand, within fimEat 418.588 kb on - strand, within fimEat 418.675 kb on + strandat 418.678 kb on + strandat 418.688 kb on - strandat 418.698 kb on + strandat 418.699 kb on - strandat 418.748 kb on + strandat 418.873 kb on + strandat 419.103 kb on + strandat 419.146 kb on - strandat 419.224 kb on + strand, within fimBat 419.226 kb on + strand, within fimBat 419.273 kb on - strand, within fimBat 419.285 kb on + strand, within fimBat 419.286 kb on - strand, within fimBat 419.380 kb on + strand, within fimBat 419.380 kb on + strand, within fimBat 419.380 kb on + strand, within fimBat 419.381 kb on - strand, within fimBat 419.381 kb on - strand, within fimBat 419.381 kb on - strand, within fimBat 419.384 kb on - strand, within fimBat 419.388 kb on + strand, within fimBat 419.458 kb on - strand, within fimBat 419.554 kb on - strand, within fimBat 419.674 kb on + strand, within fimBat 419.793 kb on - strandat 419.804 kb on - strandat 419.911 kb on + strandat 419.912 kb on - strandat 419.996 kb on - strandat 420.033 kb on - strandat 420.201 kb on - strandat 420.261 kb on + strandat 420.274 kb on - strandat 420.284 kb on + strandat 420.285 kb on - strandat 420.316 kb on + strandat 420.334 kb on + strandat 420.335 kb on - strandat 420.348 kb on - strandat 420.354 kb on + strandat 420.403 kb on + strandat 420.438 kb on + strandat 420.439 kb on - strandat 420.439 kb on - strandat 420.439 kb on - strandat 420.474 kb on - strandat 420.496 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV240
remove
418,150 + fimE MCAODC_02125 0.12 -1.6
418,160 - fimE MCAODC_02125 0.14 +1.8
418,160 - fimE MCAODC_02125 0.14 -0.2
418,161 + fimE MCAODC_02125 0.14 -0.6
418,161 + fimE MCAODC_02125 0.14 +1.8
418,162 - fimE MCAODC_02125 0.14 -1.0
418,166 + fimE MCAODC_02125 0.15 +0.5
418,167 - fimE MCAODC_02125 0.15 -1.2
418,167 - fimE MCAODC_02125 0.15 +2.8
418,172 - fimE MCAODC_02125 0.16 -0.4
418,208 + fimE MCAODC_02125 0.22 -0.2
418,208 + fimE MCAODC_02125 0.22 -0.2
418,259 + fimE MCAODC_02125 0.31 -0.2
418,260 - fimE MCAODC_02125 0.31 -1.2
418,264 + fimE MCAODC_02125 0.31 -0.2
418,265 - fimE MCAODC_02125 0.32 +0.1
418,265 - fimE MCAODC_02125 0.32 -0.9
418,265 - fimE MCAODC_02125 0.32 -0.8
418,363 + fimE MCAODC_02125 0.48 +1.4
418,364 - fimE MCAODC_02125 0.48 +0.4
418,367 + fimE MCAODC_02125 0.49 +0.6
418,367 + fimE MCAODC_02125 0.49 -0.4
418,368 - fimE MCAODC_02125 0.49 +0.9
418,409 + fimE MCAODC_02125 0.56 +2.3
418,410 - fimE MCAODC_02125 0.56 +0.0
418,546 + fimE MCAODC_02125 0.79 -0.6
418,550 - fimE MCAODC_02125 0.79 -0.3
418,579 + fimE MCAODC_02125 0.84 -0.3
418,579 + fimE MCAODC_02125 0.84 +1.5
418,588 - fimE MCAODC_02125 0.86 +0.6
418,675 + +0.2
418,678 + -0.8
418,688 - -1.4
418,698 + +0.9
418,699 - +0.2
418,748 + +0.2
418,873 + +0.1
419,103 + +0.8
419,146 - -0.4
419,224 + fimB MCAODC_02130 0.12 +0.9
419,226 + fimB MCAODC_02130 0.13 +0.2
419,273 - fimB MCAODC_02130 0.20 +0.3
419,285 + fimB MCAODC_02130 0.22 -0.2
419,286 - fimB MCAODC_02130 0.23 -0.1
419,380 + fimB MCAODC_02130 0.38 +1.2
419,380 + fimB MCAODC_02130 0.38 -1.2
419,380 + fimB MCAODC_02130 0.38 +0.1
419,381 - fimB MCAODC_02130 0.38 -0.3
419,381 - fimB MCAODC_02130 0.38 +0.6
419,381 - fimB MCAODC_02130 0.38 +0.1
419,384 - fimB MCAODC_02130 0.39 +0.3
419,388 + fimB MCAODC_02130 0.39 +1.4
419,458 - fimB MCAODC_02130 0.51 -0.6
419,554 - fimB MCAODC_02130 0.67 +0.2
419,674 + fimB MCAODC_02130 0.87 -0.8
419,793 - -0.4
419,804 - +0.5
419,911 + +2.4
419,912 - +0.0
419,996 - -0.3
420,033 - -0.3
420,201 - -0.5
420,261 + -2.7
420,274 - -0.6
420,284 + -1.8
420,285 - +1.7
420,316 + +0.2
420,334 + +0.1
420,335 - -1.8
420,348 - -0.2
420,354 + +1.2
420,403 + -0.2
420,438 + +1.8
420,439 - -0.6
420,439 - -1.5
420,439 - +0.0
420,474 - -0.7
420,496 + +1.6

Or see this region's nucleotide sequence