Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lgoT and tsr are separated by 48 nucleotides tsr and MCAODC_01895 are separated by 228 nucleotides
MCAODC_01885: lgoT - putative L-galactonate transporter, at 362,560 to 363,921
lgoT
MCAODC_01890: tsr - methyl-accepting chemotaxis protein, at 363,970 to 365,634
tsr
MCAODC_01895: MCAODC_01895 - hypothetical protein, at 365,863 to 366,405
_01895
Position (kb) 363
364
365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 363.014 kb on + strand, within lgoT at 363.015 kb on - strand, within lgoT at 363.101 kb on + strand, within lgoT at 363.102 kb on - strand, within lgoT at 363.102 kb on - strand, within lgoT at 363.157 kb on - strand, within lgoT at 363.157 kb on - strand, within lgoT at 363.160 kb on - strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.200 kb on - strand, within lgoT at 363.200 kb on - strand, within lgoT at 363.200 kb on - strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.227 kb on + strand, within lgoT at 363.228 kb on - strand, within lgoT at 363.228 kb on - strand, within lgoT at 363.253 kb on + strand, within lgoT at 363.253 kb on + strand, within lgoT at 363.254 kb on - strand, within lgoT at 363.267 kb on + strand, within lgoT at 363.325 kb on - strand, within lgoT at 363.370 kb on + strand, within lgoT at 363.385 kb on + strand, within lgoT at 363.385 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.422 kb on - strand, within lgoT at 363.422 kb on - strand, within lgoT at 363.422 kb on - strand, within lgoT at 363.423 kb on + strand, within lgoT at 363.435 kb on - strand, within lgoT at 363.503 kb on - strand, within lgoT at 363.565 kb on - strand, within lgoT at 363.565 kb on - strand, within lgoT at 363.565 kb on - strand, within lgoT at 363.602 kb on + strand, within lgoT at 363.606 kb on - strand, within lgoT at 363.663 kb on + strand, within lgoT at 363.799 kb on - strand at 363.799 kb on - strand at 363.799 kb on - strand at 363.807 kb on + strand at 363.808 kb on - strand at 363.808 kb on - strand at 363.808 kb on - strand at 363.808 kb on - strand at 363.874 kb on + strand at 363.874 kb on + strand at 363.874 kb on + strand at 363.875 kb on - strand at 363.875 kb on - strand at 363.875 kb on - strand at 363.919 kb on + strand at 363.920 kb on - strand at 363.920 kb on - strand at 363.971 kb on + strand at 363.971 kb on + strand at 363.997 kb on - strand at 364.227 kb on + strand, within tsr at 364.258 kb on + strand, within tsr at 364.258 kb on + strand, within tsr at 364.259 kb on - strand, within tsr at 364.269 kb on + strand, within tsr at 364.270 kb on - strand, within tsr at 364.584 kb on + strand, within tsr at 364.600 kb on - strand, within tsr at 364.642 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.840 kb on - strand, within tsr at 364.861 kb on - strand, within tsr at 364.941 kb on + strand, within tsr at 364.992 kb on + strand, within tsr at 364.992 kb on + strand, within tsr at 365.069 kb on + strand, within tsr at 365.069 kb on + strand, within tsr at 365.070 kb on - strand, within tsr at 365.070 kb on - strand, within tsr at 365.070 kb on - strand, within tsr at 365.102 kb on + strand, within tsr at 365.103 kb on - strand, within tsr at 365.103 kb on - strand, within tsr at 365.103 kb on - strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.127 kb on - strand, within tsr at 365.127 kb on - strand, within tsr at 365.127 kb on - strand, within tsr at 365.135 kb on + strand, within tsr at 365.135 kb on + strand, within tsr at 365.135 kb on + strand, within tsr at 365.135 kb on + strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.160 kb on - strand, within tsr at 365.206 kb on + strand, within tsr at 365.206 kb on + strand, within tsr at 365.207 kb on - strand, within tsr at 365.207 kb on - strand, within tsr at 365.249 kb on + strand, within tsr at 365.249 kb on + strand, within tsr at 365.249 kb on + strand, within tsr at 365.250 kb on - strand, within tsr at 365.250 kb on - strand, within tsr at 365.250 kb on - strand, within tsr at 365.394 kb on + strand, within tsr at 365.395 kb on - strand, within tsr at 365.397 kb on + strand, within tsr at 365.414 kb on + strand, within tsr at 365.414 kb on + strand, within tsr at 365.506 kb on + strand at 365.507 kb on - strand at 365.507 kb on - strand at 365.544 kb on + strand at 365.572 kb on + strand at 365.572 kb on + strand at 365.602 kb on + strand at 365.603 kb on - strand at 365.623 kb on - strand at 365.623 kb on - strand at 365.692 kb on + strand at 365.764 kb on + strand at 365.765 kb on - strand at 365.926 kb on - strand, within MCAODC_01895 at 365.947 kb on - strand, within MCAODC_01895 at 366.003 kb on + strand, within MCAODC_01895 at 366.004 kb on - strand, within MCAODC_01895 at 366.004 kb on - strand, within MCAODC_01895 at 366.057 kb on + strand, within MCAODC_01895 at 366.058 kb on - strand, within MCAODC_01895 at 366.101 kb on + strand, within MCAODC_01895 at 366.104 kb on + strand, within MCAODC_01895 at 366.105 kb on - strand, within MCAODC_01895 at 366.130 kb on - strand, within MCAODC_01895 at 366.363 kb on + strand at 366.439 kb on + strand at 366.487 kb on - strand at 366.500 kb on - strand at 366.540 kb on + strand at 366.541 kb on - strand at 366.553 kb on + strand at 366.566 kb on - strand at 366.569 kb on + strand at 366.569 kb on + strand at 366.574 kb on + strand at 366.590 kb on - strand at 366.626 kb on + strand at 366.627 kb on - strand at 366.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 363,014 + lgoT MCAODC_01885 0.33 +1.2 363,015 - lgoT MCAODC_01885 0.33 -0.0 363,101 + lgoT MCAODC_01885 0.40 +0.3 363,102 - lgoT MCAODC_01885 0.40 -0.4 363,102 - lgoT MCAODC_01885 0.40 -0.2 363,157 - lgoT MCAODC_01885 0.44 +0.3 363,157 - lgoT MCAODC_01885 0.44 -1.0 363,160 - lgoT MCAODC_01885 0.44 -0.2 363,199 + lgoT MCAODC_01885 0.47 -1.4 363,199 + lgoT MCAODC_01885 0.47 -1.3 363,199 + lgoT MCAODC_01885 0.47 -0.9 363,199 + lgoT MCAODC_01885 0.47 +0.2 363,199 + lgoT MCAODC_01885 0.47 -0.2 363,200 - lgoT MCAODC_01885 0.47 +0.2 363,200 - lgoT MCAODC_01885 0.47 +0.1 363,200 - lgoT MCAODC_01885 0.47 -0.5 363,201 + lgoT MCAODC_01885 0.47 +0.2 363,201 + lgoT MCAODC_01885 0.47 -0.1 363,201 + lgoT MCAODC_01885 0.47 +1.0 363,201 + lgoT MCAODC_01885 0.47 -1.7 363,201 + lgoT MCAODC_01885 0.47 +2.0 363,201 + lgoT MCAODC_01885 0.47 -0.7 363,202 - lgoT MCAODC_01885 0.47 +0.2 363,202 - lgoT MCAODC_01885 0.47 -1.2 363,202 - lgoT MCAODC_01885 0.47 -1.0 363,202 - lgoT MCAODC_01885 0.47 -0.2 363,202 - lgoT MCAODC_01885 0.47 -1.3 363,202 - lgoT MCAODC_01885 0.47 -0.2 363,202 - lgoT MCAODC_01885 0.47 -0.9 363,202 - lgoT MCAODC_01885 0.47 +1.5 363,202 - lgoT MCAODC_01885 0.47 -2.2 363,227 + lgoT MCAODC_01885 0.49 +1.5 363,228 - lgoT MCAODC_01885 0.49 +0.2 363,228 - lgoT MCAODC_01885 0.49 -1.4 363,253 + lgoT MCAODC_01885 0.51 -0.3 363,253 + lgoT MCAODC_01885 0.51 -2.4 363,254 - lgoT MCAODC_01885 0.51 +0.8 363,267 + lgoT MCAODC_01885 0.52 -0.7 363,325 - lgoT MCAODC_01885 0.56 -0.2 363,370 + lgoT MCAODC_01885 0.59 +0.1 363,385 + lgoT MCAODC_01885 0.61 -0.5 363,385 + lgoT MCAODC_01885 0.61 -1.3 363,421 + lgoT MCAODC_01885 0.63 -2.5 363,421 + lgoT MCAODC_01885 0.63 +0.9 363,421 + lgoT MCAODC_01885 0.63 -2.9 363,421 + lgoT MCAODC_01885 0.63 -1.4 363,421 + lgoT MCAODC_01885 0.63 +0.2 363,421 + lgoT MCAODC_01885 0.63 +0.9 363,421 + lgoT MCAODC_01885 0.63 -0.8 363,422 - lgoT MCAODC_01885 0.63 -0.2 363,422 - lgoT MCAODC_01885 0.63 -0.5 363,422 - lgoT MCAODC_01885 0.63 -1.2 363,423 + lgoT MCAODC_01885 0.63 +1.1 363,435 - lgoT MCAODC_01885 0.64 +1.0 363,503 - lgoT MCAODC_01885 0.69 +0.4 363,565 - lgoT MCAODC_01885 0.74 +0.2 363,565 - lgoT MCAODC_01885 0.74 -0.5 363,565 - lgoT MCAODC_01885 0.74 -0.5 363,602 + lgoT MCAODC_01885 0.77 -0.8 363,606 - lgoT MCAODC_01885 0.77 +0.5 363,663 + lgoT MCAODC_01885 0.81 +0.6 363,799 - +1.5 363,799 - +0.0 363,799 - +0.2 363,807 + -1.0 363,808 - +0.1 363,808 - +0.1 363,808 - +0.8 363,808 - -1.2 363,874 + -0.0 363,874 + +0.5 363,874 + -0.3 363,875 - -0.3 363,875 - -1.4 363,875 - +0.0 363,919 + +0.1 363,920 - -1.4 363,920 - +0.6 363,971 + -1.9 363,971 + -0.2 363,997 - -0.1 364,227 + tsr MCAODC_01890 0.15 +2.4 364,258 + tsr MCAODC_01890 0.17 -0.5 364,258 + tsr MCAODC_01890 0.17 +0.8 364,259 - tsr MCAODC_01890 0.17 -2.1 364,269 + tsr MCAODC_01890 0.18 +0.2 364,270 - tsr MCAODC_01890 0.18 -1.0 364,584 + tsr MCAODC_01890 0.37 -0.2 364,600 - tsr MCAODC_01890 0.38 +0.2 364,642 + tsr MCAODC_01890 0.40 -0.3 364,802 + tsr MCAODC_01890 0.50 +1.4 364,802 + tsr MCAODC_01890 0.50 -0.1 364,802 + tsr MCAODC_01890 0.50 -0.7 364,802 + tsr MCAODC_01890 0.50 -1.0 364,802 + tsr MCAODC_01890 0.50 +1.5 364,803 - tsr MCAODC_01890 0.50 -1.8 364,803 - tsr MCAODC_01890 0.50 +0.0 364,803 - tsr MCAODC_01890 0.50 -1.5 364,803 - tsr MCAODC_01890 0.50 -0.2 364,803 - tsr MCAODC_01890 0.50 -0.2 364,803 - tsr MCAODC_01890 0.50 -0.4 364,803 - tsr MCAODC_01890 0.50 -0.5 364,803 - tsr MCAODC_01890 0.50 +0.6 364,840 - tsr MCAODC_01890 0.52 +0.1 364,861 - tsr MCAODC_01890 0.54 -0.7 364,941 + tsr MCAODC_01890 0.58 -0.2 364,992 + tsr MCAODC_01890 0.61 -0.8 364,992 + tsr MCAODC_01890 0.61 +1.0 365,069 + tsr MCAODC_01890 0.66 +0.7 365,069 + tsr MCAODC_01890 0.66 +0.3 365,070 - tsr MCAODC_01890 0.66 -0.2 365,070 - tsr MCAODC_01890 0.66 +0.2 365,070 - tsr MCAODC_01890 0.66 -1.0 365,102 + tsr MCAODC_01890 0.68 -1.7 365,103 - tsr MCAODC_01890 0.68 +1.0 365,103 - tsr MCAODC_01890 0.68 -0.5 365,103 - tsr MCAODC_01890 0.68 -1.5 365,126 + tsr MCAODC_01890 0.69 -0.4 365,126 + tsr MCAODC_01890 0.69 +1.0 365,126 + tsr MCAODC_01890 0.69 -0.0 365,126 + tsr MCAODC_01890 0.69 +0.2 365,126 + tsr MCAODC_01890 0.69 +0.8 365,127 - tsr MCAODC_01890 0.69 -0.8 365,127 - tsr MCAODC_01890 0.69 -0.5 365,127 - tsr MCAODC_01890 0.69 +1.8 365,135 + tsr MCAODC_01890 0.70 -0.3 365,135 + tsr MCAODC_01890 0.70 -0.9 365,135 + tsr MCAODC_01890 0.70 -1.1 365,135 + tsr MCAODC_01890 0.70 +0.1 365,136 - tsr MCAODC_01890 0.70 +0.2 365,136 - tsr MCAODC_01890 0.70 +0.0 365,136 - tsr MCAODC_01890 0.70 -1.0 365,136 - tsr MCAODC_01890 0.70 -1.0 365,136 - tsr MCAODC_01890 0.70 -0.4 365,136 - tsr MCAODC_01890 0.70 +0.6 365,160 - tsr MCAODC_01890 0.71 -0.9 365,206 + tsr MCAODC_01890 0.74 -1.2 365,206 + tsr MCAODC_01890 0.74 +0.8 365,207 - tsr MCAODC_01890 0.74 +1.2 365,207 - tsr MCAODC_01890 0.74 -0.2 365,249 + tsr MCAODC_01890 0.77 -1.4 365,249 + tsr MCAODC_01890 0.77 -0.0 365,249 + tsr MCAODC_01890 0.77 -0.7 365,250 - tsr MCAODC_01890 0.77 -1.1 365,250 - tsr MCAODC_01890 0.77 -1.8 365,250 - tsr MCAODC_01890 0.77 -0.0 365,394 + tsr MCAODC_01890 0.86 -0.5 365,395 - tsr MCAODC_01890 0.86 +0.2 365,397 + tsr MCAODC_01890 0.86 +0.6 365,414 + tsr MCAODC_01890 0.87 -0.6 365,414 + tsr MCAODC_01890 0.87 +0.0 365,506 + -2.3 365,507 - -0.2 365,507 - -0.3 365,544 + +0.3 365,572 + -2.0 365,572 + +0.5 365,602 + +1.8 365,603 - +0.1 365,623 - -0.4 365,623 - -1.2 365,692 + +0.1 365,764 + +0.8 365,765 - +0.8 365,926 - MCAODC_01895 0.12 -0.8 365,947 - MCAODC_01895 0.15 -0.4 366,003 + MCAODC_01895 0.26 -0.4 366,004 - MCAODC_01895 0.26 +1.8 366,004 - MCAODC_01895 0.26 -2.1 366,057 + MCAODC_01895 0.36 -0.9 366,058 - MCAODC_01895 0.36 -0.4 366,101 + MCAODC_01895 0.44 +0.2 366,104 + MCAODC_01895 0.44 -0.1 366,105 - MCAODC_01895 0.45 +1.1 366,130 - MCAODC_01895 0.49 -0.4 366,363 + +0.2 366,439 + -0.0 366,487 - +1.6 366,500 - -1.7 366,540 + -0.0 366,541 - -1.2 366,553 + +0.2 366,566 - -0.7 366,569 + +1.5 366,569 + +0.3 366,574 + -0.2 366,590 - +1.8 366,626 + -1.6 366,627 - +0.8 366,627 - -1.4
Or see this region's nucleotide sequence