Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt djlA and lptD are separated by 254 nucleotides lptD and surA are separated by 52 nucleotides
MCAODC_01330: djlA - co-chaperone DjlA, at 254,041 to 254,856
djlA
MCAODC_01335: lptD - LPS assembly protein LptD, at 255,111 to 257,465
lptD
MCAODC_01340: surA - peptidylprolyl isomerase SurA, at 257,518 to 258,804
surA
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 254.178 kb on + strand, within djlA at 254.179 kb on - strand, within djlA at 254.179 kb on - strand, within djlA at 254.179 kb on - strand, within djlA at 254.236 kb on - strand, within djlA at 254.236 kb on - strand, within djlA at 254.280 kb on + strand, within djlA at 254.281 kb on - strand, within djlA at 254.281 kb on - strand, within djlA at 254.374 kb on + strand, within djlA at 254.393 kb on + strand, within djlA at 254.394 kb on - strand, within djlA at 254.394 kb on - strand, within djlA at 254.394 kb on - strand, within djlA at 254.394 kb on - strand, within djlA at 254.474 kb on - strand, within djlA at 254.531 kb on + strand, within djlA at 254.532 kb on - strand, within djlA at 254.622 kb on + strand, within djlA at 254.628 kb on + strand, within djlA at 254.628 kb on + strand, within djlA at 254.629 kb on - strand, within djlA at 254.629 kb on - strand, within djlA at 254.740 kb on - strand, within djlA at 254.764 kb on - strand, within djlA at 254.764 kb on - strand, within djlA at 254.764 kb on - strand, within djlA at 254.774 kb on - strand, within djlA at 254.774 kb on - strand, within djlA at 254.782 kb on + strand at 254.783 kb on - strand at 254.783 kb on - strand at 254.816 kb on - strand at 254.816 kb on - strand at 254.850 kb on - strand at 254.856 kb on + strand at 254.856 kb on + strand at 254.856 kb on + strand at 254.856 kb on + strand at 254.856 kb on + strand at 254.856 kb on + strand at 254.856 kb on + strand at 254.857 kb on - strand at 254.857 kb on - strand at 254.857 kb on - strand at 254.857 kb on - strand at 254.858 kb on + strand at 254.858 kb on + strand at 254.858 kb on + strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.859 kb on - strand at 254.890 kb on + strand at 254.902 kb on + strand at 254.903 kb on - strand at 254.903 kb on - strand at 254.903 kb on - strand at 254.904 kb on + strand at 254.904 kb on + strand at 254.904 kb on + strand at 254.904 kb on + strand at 254.905 kb on - strand at 254.905 kb on - strand at 254.905 kb on - strand at 254.905 kb on - strand at 254.905 kb on - strand at 254.905 kb on - strand at 254.955 kb on - strand at 254.956 kb on + strand at 254.966 kb on + strand at 254.971 kb on + strand at 254.971 kb on + strand at 254.971 kb on + strand at 254.971 kb on + strand at 254.971 kb on + strand at 254.972 kb on - strand at 254.972 kb on - strand at 255.009 kb on + strand at 255.023 kb on + strand at 255.023 kb on + strand at 255.034 kb on + strand at 255.047 kb on + strand at 255.047 kb on + strand at 255.047 kb on + strand at 255.047 kb on + strand at 255.052 kb on + strand at 257.403 kb on + strand at 257.404 kb on - strand at 257.476 kb on + strand at 257.476 kb on + strand at 257.477 kb on - strand at 257.517 kb on + strand at 257.565 kb on + strand at 257.652 kb on - strand, within surA at 257.820 kb on + strand, within surA at 257.900 kb on - strand, within surA at 257.928 kb on + strand, within surA at 257.929 kb on - strand, within surA at 258.013 kb on - strand, within surA at 258.315 kb on + strand, within surA at 258.317 kb on + strand, within surA at 258.317 kb on + strand, within surA
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 254,178 + djlA MCAODC_01330 0.17 -1.1 254,179 - djlA MCAODC_01330 0.17 -0.0 254,179 - djlA MCAODC_01330 0.17 -1.0 254,179 - djlA MCAODC_01330 0.17 -2.1 254,236 - djlA MCAODC_01330 0.24 +0.2 254,236 - djlA MCAODC_01330 0.24 +1.2 254,280 + djlA MCAODC_01330 0.29 +0.7 254,281 - djlA MCAODC_01330 0.29 +0.2 254,281 - djlA MCAODC_01330 0.29 -0.6 254,374 + djlA MCAODC_01330 0.41 +1.7 254,393 + djlA MCAODC_01330 0.43 -0.8 254,394 - djlA MCAODC_01330 0.43 -2.0 254,394 - djlA MCAODC_01330 0.43 -0.1 254,394 - djlA MCAODC_01330 0.43 -1.2 254,394 - djlA MCAODC_01330 0.43 +1.1 254,474 - djlA MCAODC_01330 0.53 +1.0 254,531 + djlA MCAODC_01330 0.60 -2.1 254,532 - djlA MCAODC_01330 0.60 -1.1 254,622 + djlA MCAODC_01330 0.71 -0.3 254,628 + djlA MCAODC_01330 0.72 -0.3 254,628 + djlA MCAODC_01330 0.72 -0.2 254,629 - djlA MCAODC_01330 0.72 +0.6 254,629 - djlA MCAODC_01330 0.72 +0.5 254,740 - djlA MCAODC_01330 0.86 +0.9 254,764 - djlA MCAODC_01330 0.89 +1.0 254,764 - djlA MCAODC_01330 0.89 -0.0 254,764 - djlA MCAODC_01330 0.89 +0.2 254,774 - djlA MCAODC_01330 0.90 +0.0 254,774 - djlA MCAODC_01330 0.90 -0.8 254,782 + -0.6 254,783 - +1.2 254,783 - -0.3 254,816 - -0.2 254,816 - +1.7 254,850 - +0.6 254,856 + -1.8 254,856 + +0.2 254,856 + +0.6 254,856 + -2.8 254,856 + -0.4 254,856 + -1.4 254,856 + +0.2 254,857 - -0.0 254,857 - -1.5 254,857 - -0.0 254,857 - -1.3 254,858 + -2.3 254,858 + -0.4 254,858 + -1.7 254,859 - +0.0 254,859 - +0.2 254,859 - -0.4 254,859 - -0.8 254,859 - -0.1 254,859 - +2.1 254,859 - -0.3 254,859 - +0.7 254,859 - +0.4 254,859 - +1.1 254,890 + +0.2 254,902 + -1.2 254,903 - -1.8 254,903 - -0.0 254,903 - +0.9 254,904 + +0.2 254,904 + -0.3 254,904 + +0.4 254,904 + +0.5 254,905 - +0.6 254,905 - +1.4 254,905 - +1.2 254,905 - +0.7 254,905 - +2.7 254,905 - +1.7 254,955 - +0.9 254,956 + -1.0 254,966 + +0.7 254,971 + -0.9 254,971 + +0.7 254,971 + +1.0 254,971 + -1.9 254,971 + +0.2 254,972 - -0.9 254,972 - -0.4 255,009 + -0.4 255,023 + -0.3 255,023 + +0.6 255,034 + -0.1 255,047 + +1.7 255,047 + +1.4 255,047 + +1.2 255,047 + +1.7 255,052 + -0.4 257,403 + -0.6 257,404 - +2.9 257,476 + -0.4 257,476 + +0.2 257,477 - +1.2 257,517 + +2.7 257,565 + -0.8 257,652 - surA MCAODC_01340 0.10 +0.2 257,820 + surA MCAODC_01340 0.23 +1.5 257,900 - surA MCAODC_01340 0.30 +2.3 257,928 + surA MCAODC_01340 0.32 +0.7 257,929 - surA MCAODC_01340 0.32 +0.5 258,013 - surA MCAODC_01340 0.38 -0.3 258,315 + surA MCAODC_01340 0.62 -0.8 258,317 + surA MCAODC_01340 0.62 +1.6 258,317 + surA MCAODC_01340 0.62 +0.2
Or see this region's nucleotide sequence