Strain Fitness in Escherichia coli ECRC101 around MCAODC_00875

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpcnB and folK overlap by 4 nucleotidesfolK and MCAODC_00880 are separated by 280 nucleotidesMCAODC_00880 and ecpD are separated by 86 nucleotides MCAODC_00870: pcnB - polynucleotide adenylyltransferase PcnB, at 153,795 to 155,159 pcnB MCAODC_00875: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 155,156 to 155,638 folK MCAODC_00880: MCAODC_00880 - fimbrial protein, at 155,919 to 156,515 _00880 MCAODC_00885: ecpD - fimbrial chaperone, at 156,602 to 157,327 ecpD Position (kb) 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 154.266 kb on + strand, within pcnBat 154.269 kb on + strand, within pcnBat 154.269 kb on + strand, within pcnBat 154.269 kb on + strand, within pcnBat 154.299 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.399 kb on + strand, within pcnBat 154.514 kb on + strand, within pcnBat 154.548 kb on + strand, within pcnBat 154.548 kb on + strand, within pcnBat 154.548 kb on + strand, within pcnBat 154.551 kb on - strand, within pcnBat 154.551 kb on - strand, within pcnBat 154.606 kb on - strand, within pcnBat 154.664 kb on + strand, within pcnBat 154.664 kb on + strand, within pcnBat 154.688 kb on + strand, within pcnBat 154.782 kb on + strand, within pcnBat 154.782 kb on + strand, within pcnBat 154.898 kb on + strand, within pcnBat 154.946 kb on + strand, within pcnBat 154.946 kb on + strand, within pcnBat 154.962 kb on + strand, within pcnBat 154.997 kb on + strand, within pcnBat 155.168 kb on + strandat 155.168 kb on + strandat 155.168 kb on + strandat 155.586 kb on + strand, within folKat 155.613 kb on + strandat 155.614 kb on - strandat 155.616 kb on + strandat 155.617 kb on - strandat 155.659 kb on - strandat 155.664 kb on - strandat 155.683 kb on - strandat 155.868 kb on - strandat 155.896 kb on + strandat 155.977 kb on + strandat 155.977 kb on + strandat 155.978 kb on - strandat 155.978 kb on - strandat 156.010 kb on + strand, within MCAODC_00880at 156.010 kb on + strand, within MCAODC_00880at 156.026 kb on + strand, within MCAODC_00880at 156.040 kb on + strand, within MCAODC_00880at 156.040 kb on + strand, within MCAODC_00880at 156.041 kb on - strand, within MCAODC_00880at 156.041 kb on - strand, within MCAODC_00880at 156.044 kb on + strand, within MCAODC_00880at 156.044 kb on + strand, within MCAODC_00880at 156.050 kb on + strand, within MCAODC_00880at 156.051 kb on - strand, within MCAODC_00880at 156.056 kb on + strand, within MCAODC_00880at 156.057 kb on - strand, within MCAODC_00880at 156.062 kb on + strand, within MCAODC_00880at 156.089 kb on + strand, within MCAODC_00880at 156.107 kb on + strand, within MCAODC_00880at 156.122 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.206 kb on - strand, within MCAODC_00880at 156.209 kb on + strand, within MCAODC_00880at 156.210 kb on - strand, within MCAODC_00880at 156.210 kb on - strand, within MCAODC_00880at 156.251 kb on + strand, within MCAODC_00880at 156.257 kb on + strand, within MCAODC_00880at 156.258 kb on - strand, within MCAODC_00880at 156.258 kb on - strand, within MCAODC_00880at 156.278 kb on + strand, within MCAODC_00880at 156.278 kb on + strand, within MCAODC_00880at 156.279 kb on - strand, within MCAODC_00880at 156.314 kb on + strand, within MCAODC_00880at 156.314 kb on + strand, within MCAODC_00880at 156.425 kb on + strand, within MCAODC_00880at 156.435 kb on + strand, within MCAODC_00880at 156.435 kb on + strand, within MCAODC_00880at 156.436 kb on - strand, within MCAODC_00880at 156.478 kb on + strandat 156.486 kb on - strandat 156.507 kb on + strandat 156.507 kb on + strandat 156.507 kb on + strandat 156.507 kb on + strandat 156.508 kb on - strandat 156.513 kb on + strandat 156.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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154,266 + pcnB MCAODC_00870 0.35 -0.8
154,269 + pcnB MCAODC_00870 0.35 +1.5
154,269 + pcnB MCAODC_00870 0.35 +0.4
154,269 + pcnB MCAODC_00870 0.35 +0.0
154,299 + pcnB MCAODC_00870 0.37 +0.2
154,385 + pcnB MCAODC_00870 0.43 -0.8
154,385 + pcnB MCAODC_00870 0.43 -0.4
154,385 + pcnB MCAODC_00870 0.43 +1.1
154,385 + pcnB MCAODC_00870 0.43 +0.5
154,385 + pcnB MCAODC_00870 0.43 -0.5
154,399 + pcnB MCAODC_00870 0.44 +0.7
154,514 + pcnB MCAODC_00870 0.53 +1.1
154,548 + pcnB MCAODC_00870 0.55 +0.4
154,548 + pcnB MCAODC_00870 0.55 -0.3
154,548 + pcnB MCAODC_00870 0.55 +0.7
154,551 - pcnB MCAODC_00870 0.55 +1.7
154,551 - pcnB MCAODC_00870 0.55 -0.3
154,606 - pcnB MCAODC_00870 0.59 -0.1
154,664 + pcnB MCAODC_00870 0.64 +1.5
154,664 + pcnB MCAODC_00870 0.64 -0.8
154,688 + pcnB MCAODC_00870 0.65 -0.2
154,782 + pcnB MCAODC_00870 0.72 -1.4
154,782 + pcnB MCAODC_00870 0.72 -0.2
154,898 + pcnB MCAODC_00870 0.81 +2.3
154,946 + pcnB MCAODC_00870 0.84 -0.3
154,946 + pcnB MCAODC_00870 0.84 +0.5
154,962 + pcnB MCAODC_00870 0.85 +3.7
154,997 + pcnB MCAODC_00870 0.88 -3.2
155,168 + -1.2
155,168 + +0.7
155,168 + -0.6
155,586 + folK MCAODC_00875 0.89 -0.3
155,613 + -1.8
155,614 - -0.6
155,616 + -0.6
155,617 - +1.5
155,659 - +0.7
155,664 - -0.6
155,683 - +0.2
155,868 - +1.2
155,896 + -0.1
155,977 + -0.1
155,977 + -0.9
155,978 - -1.3
155,978 - -0.5
156,010 + MCAODC_00880 0.15 -0.1
156,010 + MCAODC_00880 0.15 +0.2
156,026 + MCAODC_00880 0.18 +0.9
156,040 + MCAODC_00880 0.20 +0.6
156,040 + MCAODC_00880 0.20 +0.7
156,041 - MCAODC_00880 0.20 -0.7
156,041 - MCAODC_00880 0.20 -0.8
156,044 + MCAODC_00880 0.21 -1.1
156,044 + MCAODC_00880 0.21 -0.3
156,050 + MCAODC_00880 0.22 +1.2
156,051 - MCAODC_00880 0.22 +1.3
156,056 + MCAODC_00880 0.23 -1.2
156,057 - MCAODC_00880 0.23 +0.2
156,062 + MCAODC_00880 0.24 -0.1
156,089 + MCAODC_00880 0.28 -0.7
156,107 + MCAODC_00880 0.31 -1.4
156,122 + MCAODC_00880 0.34 -0.5
156,205 + MCAODC_00880 0.48 +1.7
156,205 + MCAODC_00880 0.48 -1.6
156,205 + MCAODC_00880 0.48 +0.7
156,205 + MCAODC_00880 0.48 +0.7
156,206 - MCAODC_00880 0.48 +1.2
156,209 + MCAODC_00880 0.49 -0.6
156,210 - MCAODC_00880 0.49 -1.6
156,210 - MCAODC_00880 0.49 +1.0
156,251 + MCAODC_00880 0.56 -1.4
156,257 + MCAODC_00880 0.57 -0.6
156,258 - MCAODC_00880 0.57 +1.0
156,258 - MCAODC_00880 0.57 -1.4
156,278 + MCAODC_00880 0.60 -2.0
156,278 + MCAODC_00880 0.60 +0.7
156,279 - MCAODC_00880 0.60 -1.0
156,314 + MCAODC_00880 0.66 +0.2
156,314 + MCAODC_00880 0.66 +0.4
156,425 + MCAODC_00880 0.85 +0.3
156,435 + MCAODC_00880 0.86 -1.4
156,435 + MCAODC_00880 0.86 +1.0
156,436 - MCAODC_00880 0.87 +0.0
156,478 + +0.3
156,486 - -1.1
156,507 + +0.4
156,507 + -0.3
156,507 + +1.1
156,507 + +0.5
156,508 - -0.7
156,513 + +1.7
156,601 + -0.6

Or see this region's nucleotide sequence