Strain Fitness in Escherichia coli ECRC101 around MCAODC_00570

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetN and metI overlap by 8 nucleotidesmetI and metQ are separated by 39 nucleotidesmetQ and rcsF are separated by 117 nucleotides MCAODC_00565: metN - methionine ABC transporter ATP-binding protein MetN, at 91,235 to 92,266 metN MCAODC_00570: metI - D-methionine transport system permease protein MetI, at 92,259 to 92,912 metI MCAODC_00575: metQ - methionine ABC transporter substrate-binding lipoprotein MetQ, at 92,952 to 93,767 metQ MCAODC_00580: rcsF - Rcs stress response system protein RcsF, at 93,885 to 94,289 rcsF Position (kb) 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 91.364 kb on - strand, within metNat 91.369 kb on + strand, within metNat 91.370 kb on - strand, within metNat 91.370 kb on - strand, within metNat 91.370 kb on - strand, within metNat 91.375 kb on + strand, within metNat 91.375 kb on + strand, within metNat 91.375 kb on + strand, within metNat 91.375 kb on + strand, within metNat 91.376 kb on - strand, within metNat 91.376 kb on - strand, within metNat 91.376 kb on - strand, within metNat 91.377 kb on + strand, within metNat 91.377 kb on + strand, within metNat 91.377 kb on + strand, within metNat 91.377 kb on + strand, within metNat 91.377 kb on + strand, within metNat 91.377 kb on + strand, within metNat 91.377 kb on + strand, within metNat 91.378 kb on - strand, within metNat 91.378 kb on - strand, within metNat 91.386 kb on + strand, within metNat 91.386 kb on + strand, within metNat 91.386 kb on + strand, within metNat 91.387 kb on - strand, within metNat 91.387 kb on - strand, within metNat 91.387 kb on - strand, within metNat 91.567 kb on + strand, within metNat 91.567 kb on + strand, within metNat 91.630 kb on + strand, within metNat 91.630 kb on + strand, within metNat 91.631 kb on - strand, within metNat 91.631 kb on - strand, within metNat 91.639 kb on + strand, within metNat 91.639 kb on + strand, within metNat 91.640 kb on - strand, within metNat 91.640 kb on - strand, within metNat 91.640 kb on - strand, within metNat 91.640 kb on - strand, within metNat 91.640 kb on - strand, within metNat 91.640 kb on - strand, within metNat 91.643 kb on + strand, within metNat 91.643 kb on + strand, within metNat 91.716 kb on + strand, within metNat 91.716 kb on + strand, within metNat 91.716 kb on + strand, within metNat 91.716 kb on + strand, within metNat 91.717 kb on - strand, within metNat 91.717 kb on - strand, within metNat 91.717 kb on - strand, within metNat 91.717 kb on - strand, within metNat 91.769 kb on - strand, within metNat 91.769 kb on - strand, within metNat 91.852 kb on + strand, within metNat 91.853 kb on - strand, within metNat 91.908 kb on + strand, within metNat 91.908 kb on + strand, within metNat 91.954 kb on + strand, within metNat 92.020 kb on + strand, within metNat 92.122 kb on + strand, within metNat 92.122 kb on + strand, within metNat 92.122 kb on + strand, within metNat 92.122 kb on + strand, within metNat 92.123 kb on - strand, within metNat 92.123 kb on - strand, within metNat 92.123 kb on - strand, within metNat 92.123 kb on - strand, within metNat 92.123 kb on - strand, within metNat 92.126 kb on - strand, within metNat 92.142 kb on - strand, within metNat 92.155 kb on + strand, within metNat 92.155 kb on + strand, within metNat 92.200 kb on + strandat 92.200 kb on + strandat 92.200 kb on + strandat 92.201 kb on - strandat 92.201 kb on - strandat 92.238 kb on + strandat 92.238 kb on + strandat 92.238 kb on + strandat 92.239 kb on - strandat 92.239 kb on - strandat 92.244 kb on + strandat 92.244 kb on + strandat 92.258 kb on + strandat 92.258 kb on + strandat 92.373 kb on + strand, within metIat 92.373 kb on + strand, within metIat 92.373 kb on + strand, within metIat 92.373 kb on + strand, within metIat 92.373 kb on + strand, within metIat 92.373 kb on + strand, within metIat 92.396 kb on + strand, within metIat 92.402 kb on + strand, within metIat 92.415 kb on + strand, within metIat 92.416 kb on - strand, within metIat 92.465 kb on + strand, within metIat 92.465 kb on + strand, within metIat 92.466 kb on - strand, within metIat 92.476 kb on + strand, within metIat 92.477 kb on - strand, within metIat 92.510 kb on + strand, within metIat 92.510 kb on + strand, within metIat 92.567 kb on + strand, within metIat 92.576 kb on + strand, within metIat 92.614 kb on + strand, within metIat 92.675 kb on - strand, within metIat 92.711 kb on + strand, within metIat 92.711 kb on + strand, within metIat 92.712 kb on - strand, within metIat 92.712 kb on - strand, within metIat 92.712 kb on - strand, within metIat 92.712 kb on - strand, within metIat 92.773 kb on + strand, within metIat 92.800 kb on - strand, within metIat 92.840 kb on - strand, within metIat 92.859 kb on + strandat 92.910 kb on + strandat 92.910 kb on + strandat 92.927 kb on + strandat 92.928 kb on - strandat 92.931 kb on + strandat 92.932 kb on - strandat 92.932 kb on - strandat 92.932 kb on - strandat 92.951 kb on + strandat 92.951 kb on + strandat 93.051 kb on - strand, within metQat 93.120 kb on + strand, within metQat 93.120 kb on + strand, within metQat 93.121 kb on - strand, within metQat 93.156 kb on + strand, within metQat 93.223 kb on - strand, within metQat 93.300 kb on + strand, within metQat 93.300 kb on + strand, within metQat 93.551 kb on + strand, within metQat 93.551 kb on + strand, within metQat 93.551 kb on + strand, within metQat 93.551 kb on + strand, within metQat 93.554 kb on + strand, within metQat 93.564 kb on + strand, within metQat 93.564 kb on + strand, within metQat 93.565 kb on - strand, within metQat 93.565 kb on - strand, within metQat 93.565 kb on - strand, within metQat 93.565 kb on - strand, within metQat 93.617 kb on + strand, within metQat 93.617 kb on + strand, within metQat 93.618 kb on - strand, within metQat 93.630 kb on + strand, within metQat 93.631 kb on - strand, within metQat 93.631 kb on - strand, within metQat 93.635 kb on - strand, within metQat 93.773 kb on - strandat 93.792 kb on + strandat 93.796 kb on - strandat 93.868 kb on + strandat 93.868 kb on + strandat 93.869 kb on - strandat 93.869 kb on - strandat 93.869 kb on - strandat 93.869 kb on - strandat 93.881 kb on + strandat 93.882 kb on - strandat 93.882 kb on - strandat 93.884 kb on + strandat 93.884 kb on + strandat 93.884 kb on + strandat 93.884 kb on + strandat 93.885 kb on - strandat 93.896 kb on - strandat 93.911 kb on - strandat 93.911 kb on - strandat 93.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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91,364 - metN MCAODC_00565 0.12 +0.7
91,369 + metN MCAODC_00565 0.13 -1.1
91,370 - metN MCAODC_00565 0.13 -1.3
91,370 - metN MCAODC_00565 0.13 -0.4
91,370 - metN MCAODC_00565 0.13 +0.5
91,375 + metN MCAODC_00565 0.14 -0.1
91,375 + metN MCAODC_00565 0.14 +0.6
91,375 + metN MCAODC_00565 0.14 -0.1
91,375 + metN MCAODC_00565 0.14 +1.5
91,376 - metN MCAODC_00565 0.14 +0.4
91,376 - metN MCAODC_00565 0.14 +0.9
91,376 - metN MCAODC_00565 0.14 +0.9
91,377 + metN MCAODC_00565 0.14 -1.6
91,377 + metN MCAODC_00565 0.14 -0.3
91,377 + metN MCAODC_00565 0.14 -0.4
91,377 + metN MCAODC_00565 0.14 +1.5
91,377 + metN MCAODC_00565 0.14 +0.7
91,377 + metN MCAODC_00565 0.14 -0.6
91,377 + metN MCAODC_00565 0.14 -2.0
91,378 - metN MCAODC_00565 0.14 +0.1
91,378 - metN MCAODC_00565 0.14 -0.5
91,386 + metN MCAODC_00565 0.15 +0.0
91,386 + metN MCAODC_00565 0.15 +1.2
91,386 + metN MCAODC_00565 0.15 -1.2
91,387 - metN MCAODC_00565 0.15 -0.3
91,387 - metN MCAODC_00565 0.15 +0.7
91,387 - metN MCAODC_00565 0.15 -1.4
91,567 + metN MCAODC_00565 0.32 -0.3
91,567 + metN MCAODC_00565 0.32 -0.4
91,630 + metN MCAODC_00565 0.38 +0.4
91,630 + metN MCAODC_00565 0.38 +1.7
91,631 - metN MCAODC_00565 0.38 +0.6
91,631 - metN MCAODC_00565 0.38 +0.5
91,639 + metN MCAODC_00565 0.39 +1.2
91,639 + metN MCAODC_00565 0.39 +0.2
91,640 - metN MCAODC_00565 0.39 +2.4
91,640 - metN MCAODC_00565 0.39 -0.3
91,640 - metN MCAODC_00565 0.39 +1.4
91,640 - metN MCAODC_00565 0.39 -0.6
91,640 - metN MCAODC_00565 0.39 +0.4
91,640 - metN MCAODC_00565 0.39 +1.5
91,643 + metN MCAODC_00565 0.40 -0.2
91,643 + metN MCAODC_00565 0.40 +1.5
91,716 + metN MCAODC_00565 0.47 +1.7
91,716 + metN MCAODC_00565 0.47 +0.5
91,716 + metN MCAODC_00565 0.47 +1.7
91,716 + metN MCAODC_00565 0.47 +0.2
91,717 - metN MCAODC_00565 0.47 +0.3
91,717 - metN MCAODC_00565 0.47 +1.2
91,717 - metN MCAODC_00565 0.47 +2.7
91,717 - metN MCAODC_00565 0.47 +2.7
91,769 - metN MCAODC_00565 0.52 -0.3
91,769 - metN MCAODC_00565 0.52 +1.1
91,852 + metN MCAODC_00565 0.60 -0.6
91,853 - metN MCAODC_00565 0.60 -0.6
91,908 + metN MCAODC_00565 0.65 -0.8
91,908 + metN MCAODC_00565 0.65 +0.2
91,954 + metN MCAODC_00565 0.70 +0.4
92,020 + metN MCAODC_00565 0.76 -0.4
92,122 + metN MCAODC_00565 0.86 +0.0
92,122 + metN MCAODC_00565 0.86 +0.2
92,122 + metN MCAODC_00565 0.86 +0.7
92,122 + metN MCAODC_00565 0.86 -1.1
92,123 - metN MCAODC_00565 0.86 +1.4
92,123 - metN MCAODC_00565 0.86 -1.3
92,123 - metN MCAODC_00565 0.86 +3.3
92,123 - metN MCAODC_00565 0.86 -0.4
92,123 - metN MCAODC_00565 0.86 +0.5
92,126 - metN MCAODC_00565 0.86 -0.2
92,142 - metN MCAODC_00565 0.88 -0.8
92,155 + metN MCAODC_00565 0.89 -0.2
92,155 + metN MCAODC_00565 0.89 -2.7
92,200 + -0.4
92,200 + +0.4
92,200 + -1.8
92,201 - +0.4
92,201 - -2.9
92,238 + +0.4
92,238 + +0.7
92,238 + +0.5
92,239 - -0.6
92,239 - -0.3
92,244 + +1.4
92,244 + -1.3
92,258 + +0.3
92,258 + -1.3
92,373 + metI MCAODC_00570 0.17 +0.8
92,373 + metI MCAODC_00570 0.17 +0.9
92,373 + metI MCAODC_00570 0.17 +0.1
92,373 + metI MCAODC_00570 0.17 -0.2
92,373 + metI MCAODC_00570 0.17 +1.2
92,373 + metI MCAODC_00570 0.17 +0.6
92,396 + metI MCAODC_00570 0.21 +0.3
92,402 + metI MCAODC_00570 0.22 -0.9
92,415 + metI MCAODC_00570 0.24 -0.5
92,416 - metI MCAODC_00570 0.24 +2.0
92,465 + metI MCAODC_00570 0.31 -0.2
92,465 + metI MCAODC_00570 0.31 -1.2
92,466 - metI MCAODC_00570 0.32 +0.9
92,476 + metI MCAODC_00570 0.33 +0.2
92,477 - metI MCAODC_00570 0.33 +1.8
92,510 + metI MCAODC_00570 0.38 -0.5
92,510 + metI MCAODC_00570 0.38 +0.7
92,567 + metI MCAODC_00570 0.47 +1.6
92,576 + metI MCAODC_00570 0.48 +0.5
92,614 + metI MCAODC_00570 0.54 -0.7
92,675 - metI MCAODC_00570 0.64 +0.4
92,711 + metI MCAODC_00570 0.69 -0.4
92,711 + metI MCAODC_00570 0.69 +1.6
92,712 - metI MCAODC_00570 0.69 -0.6
92,712 - metI MCAODC_00570 0.69 -0.8
92,712 - metI MCAODC_00570 0.69 -0.6
92,712 - metI MCAODC_00570 0.69 +0.4
92,773 + metI MCAODC_00570 0.79 -0.3
92,800 - metI MCAODC_00570 0.83 -0.2
92,840 - metI MCAODC_00570 0.89 -0.7
92,859 + +0.2
92,910 + +1.0
92,910 + -2.4
92,927 + +1.5
92,928 - -0.3
92,931 + -1.9
92,932 - +0.7
92,932 - -0.3
92,932 - +0.8
92,951 + +0.3
92,951 + -0.5
93,051 - metQ MCAODC_00575 0.12 -0.6
93,120 + metQ MCAODC_00575 0.21 +1.7
93,120 + metQ MCAODC_00575 0.21 +0.7
93,121 - metQ MCAODC_00575 0.21 -1.1
93,156 + metQ MCAODC_00575 0.25 +0.9
93,223 - metQ MCAODC_00575 0.33 +0.2
93,300 + metQ MCAODC_00575 0.43 -2.5
93,300 + metQ MCAODC_00575 0.43 -1.1
93,551 + metQ MCAODC_00575 0.73 -0.2
93,551 + metQ MCAODC_00575 0.73 +0.0
93,551 + metQ MCAODC_00575 0.73 +0.3
93,551 + metQ MCAODC_00575 0.73 +0.5
93,554 + metQ MCAODC_00575 0.74 +0.2
93,564 + metQ MCAODC_00575 0.75 -0.3
93,564 + metQ MCAODC_00575 0.75 +0.5
93,565 - metQ MCAODC_00575 0.75 +0.3
93,565 - metQ MCAODC_00575 0.75 -2.3
93,565 - metQ MCAODC_00575 0.75 -1.3
93,565 - metQ MCAODC_00575 0.75 +0.7
93,617 + metQ MCAODC_00575 0.81 +0.2
93,617 + metQ MCAODC_00575 0.81 -0.3
93,618 - metQ MCAODC_00575 0.82 -0.4
93,630 + metQ MCAODC_00575 0.83 -0.4
93,631 - metQ MCAODC_00575 0.83 +3.1
93,631 - metQ MCAODC_00575 0.83 -0.3
93,635 - metQ MCAODC_00575 0.84 +0.3
93,773 - +0.7
93,792 + +0.0
93,796 - +1.0
93,868 + -1.3
93,868 + +1.5
93,869 - +0.6
93,869 - +1.0
93,869 - +1.8
93,869 - -0.5
93,881 + -0.2
93,882 - -0.0
93,882 - -0.1
93,884 + -0.7
93,884 + +0.5
93,884 + +0.2
93,884 + +0.7
93,885 - -1.9
93,896 - +0.6
93,911 - +1.0
93,911 - -1.3
93,911 - +0.2

Or see this region's nucleotide sequence