Strain Fitness in Escherichia fergusonii Becca around EFB2_03321

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,474,268	-		EFB2_03319	0.42	+2.1
3,474,292	+		EFB2_03319	0.45	+1.1
3,474,292	+		EFB2_03319	0.45	-0.5
3,474,292	+		EFB2_03319	0.45	+0.8
3,474,293	-		EFB2_03319	0.45	+1.3
3,474,293	-		EFB2_03319	0.45	+2.3
3,474,335	+		EFB2_03319	0.51	-1.1
3,474,335	+		EFB2_03319	0.51	-1.0
3,474,335	+		EFB2_03319	0.51	+1.1
3,474,335	+		EFB2_03319	0.51	+1.5
3,474,336	-		EFB2_03319	0.51	+0.4
3,474,344	+		EFB2_03319	0.53	+1.3
3,474,356	+		EFB2_03319	0.54	-0.5
3,474,358	+		EFB2_03319	0.55	-1.0
3,474,358	+		EFB2_03319	0.55	+5.3
3,474,358	+		EFB2_03319	0.55	-2.0
3,474,358	+		EFB2_03319	0.55	+0.3
3,474,358	+		EFB2_03319	0.55	-2.0
3,474,358	+		EFB2_03319	0.55	+0.3
3,474,359	-		EFB2_03319	0.55	+1.9
3,474,359	-		EFB2_03319	0.55	+0.3
3,474,359	-		EFB2_03319	0.55	-1.8
3,474,359	-		EFB2_03319	0.55	+0.1
3,474,359	-		EFB2_03319	0.55	+0.7
3,474,372	-		EFB2_03319	0.57	-0.3
3,474,383	+		EFB2_03319	0.58	+2.6
3,474,383	+		EFB2_03319	0.58	-1.0
3,474,384	-		EFB2_03319	0.58	-2.0
3,474,384	-		EFB2_03319	0.58	+0.8
3,474,384	-		EFB2_03319	0.58	+2.1
3,474,384	-		EFB2_03319	0.58	+2.3
3,474,403	+		EFB2_03319	0.61	+0.5
3,474,403	+		EFB2_03319	0.61	+1.4
3,474,404	-		EFB2_03319	0.61	+0.2
3,474,410	+		EFB2_03319	0.62	+1.7
3,474,410	+		EFB2_03319	0.62	+0.5
3,474,410	+		EFB2_03319	0.62	+1.6
3,474,411	-		EFB2_03319	0.62	-0.5
3,474,411	-		EFB2_03319	0.62	-3.2
3,474,411	-		EFB2_03319	0.62	-0.7
3,474,411	-		EFB2_03319	0.62	-0.9
3,474,459	+		EFB2_03319	0.69	+0.8
3,474,460	-		EFB2_03319	0.69	-0.1
3,474,467	+		EFB2_03319	0.70	-1.6
3,474,467	+		EFB2_03319	0.70	-2.0
3,474,468	-		EFB2_03319	0.70	+0.8
3,474,468	-		EFB2_03319	0.70	-0.7
3,474,477	+		EFB2_03319	0.71	+1.3
3,474,477	+		EFB2_03319	0.71	+1.2
3,474,478	-		EFB2_03319	0.72	-0.5
3,474,478	-		EFB2_03319	0.72	+0.8
3,474,478	-		EFB2_03319	0.72	-0.2
3,474,478	-		EFB2_03319	0.72	-1.5
3,474,501	+		EFB2_03319	0.75	+0.8
3,474,516	-		EFB2_03319	0.77	+1.2
3,474,548	+		EFB2_03319	0.82	+0.1
3,474,549	-		EFB2_03319	0.82	+1.3
3,474,556	+		EFB2_03319	0.83	+3.0
3,474,556	+		EFB2_03319	0.83	-0.2
3,474,556	+		EFB2_03319	0.83	-0.9
3,474,556	+		EFB2_03319	0.83	-0.4
3,474,556	+		EFB2_03319	0.83	-0.5
3,474,556	+		EFB2_03319	0.83	-3.6
3,474,556	+		EFB2_03319	0.83	-1.2
3,474,556	+		EFB2_03319	0.83	-1.0
3,474,557	-		EFB2_03319	0.83	-0.0
3,474,557	-		EFB2_03319	0.83	-1.0
3,474,557	-		EFB2_03319	0.83	-1.5
3,474,557	-		EFB2_03319	0.83	+0.5
3,474,557	-		EFB2_03319	0.83	-0.5
3,474,557	-		EFB2_03319	0.83	-0.3
3,474,557	-		EFB2_03319	0.83	+1.0
3,474,604	+		EFB2_03319	0.90	+0.9
3,474,605	-		EFB2_03319	0.90	-1.5
3,474,605	-		EFB2_03319	0.90	-0.1
3,474,617	+				+0.4
3,474,617	+				+1.3
3,474,617	+				+0.3
3,474,617	+				-0.7
3,474,617	+				-1.6
3,474,617	+				-1.2
3,474,618	-				+2.4
3,474,618	-				+1.2
3,474,618	-				-2.9
3,474,618	-				+0.5
3,474,619	+				+2.9
3,474,619	+				-1.2
3,474,619	+				+0.5
3,474,619	+				-2.8
3,474,619	+				-0.5
3,474,619	+				+1.3
3,474,619	+				+0.9
3,474,619	+				+0.8
3,474,619	+				+3.5
3,474,619	+				+0.8
3,474,619	+				+1.3
3,474,619	+				+0.5
3,474,619	+				-1.8
3,474,619	+				+0.9
3,474,619	+				-1.2
3,474,619	+				-0.5
3,474,619	+				-0.7
3,474,619	+				-1.5
3,474,619	+				+1.0
3,474,619	+				+1.3
3,474,619	+				-0.4
3,474,619	+				+0.5
3,474,619	+				+0.9
3,474,619	+				-0.0
3,474,619	+				+1.7
3,474,619	+				-1.6
3,474,620	-				-2.2
3,474,620	-				+1.1
3,474,620	-				+1.5
3,474,620	-				-0.1
3,474,620	-				+0.7
3,474,620	-				-1.6
3,474,620	-				+0.1
3,474,620	-				-1.7
3,474,620	-				+0.3
3,474,620	-				+2.2
3,474,620	-				-0.6
3,474,620	-				-0.3
3,474,620	-				-0.0
3,474,620	-				+0.1
3,474,620	-				-1.0
3,474,645	+				-0.5
3,474,645	+				+1.8
3,474,645	+				+1.0
3,474,645	+				+1.5
3,474,645	+				-0.7
3,474,645	+				-0.3
3,474,645	+				+1.4
3,474,646	-				+1.1
3,474,646	-				+0.1
3,474,646	-				+0.3
3,474,694	+				+0.2
3,474,694	+				+0.2
3,474,694	+				+0.4
3,474,694	+				+0.9
3,474,695	-				-1.4
3,474,695	-				+0.1
3,474,695	-				+1.1
3,474,695	-				+2.1
3,474,695	-				+0.7
3,474,695	-				+0.5
3,474,695	-				+1.3
3,474,695	-				+0.8
3,474,695	-				+0.3
3,474,696	+				-0.9
3,474,696	+				-0.4
3,474,696	+				-1.4
3,474,696	+				+0.9
3,474,696	+				+0.7
3,474,696	+				+0.1
3,474,696	+				+0.2
3,474,696	+				-1.4
3,474,696	+				-2.4
3,474,696	+				-2.3
3,474,696	+				-2.7
3,474,696	+				-0.1
3,474,697	-				-0.1
3,474,697	-				+0.3
3,474,697	-				-0.9
3,474,697	-				+1.3
3,474,697	-				+0.5
3,474,697	-				+0.9
3,474,697	-				-0.9
3,474,697	-				+0.6
3,474,697	-				-1.7
3,474,697	-				+0.6
3,474,697	-				-2.2
3,474,703	+				+1.1
3,474,703	+				-1.3
3,474,703	+				-1.1
3,474,703	+				-1.3
3,474,703	+				+0.9
3,474,703	+				-0.4
3,474,703	+				+3.7
3,474,704	-				-2.0
3,474,704	-				-1.5
3,474,709	-				-0.2
3,474,709	-				-0.6
3,474,709	-				-2.2
3,474,714	+				+1.2
3,474,715	-				+0.6
3,474,750	+				+1.1
3,474,760	+				-0.7
3,474,760	+				-1.8
3,474,760	+				-1.4
3,474,760	+				-0.6
3,474,760	+				-1.9
3,474,760	+				-0.5
3,474,760	+				-2.3
3,474,760	+				+0.1
3,474,760	+				-1.9
3,474,760	+				-0.7
3,474,760	+				+0.4
3,474,760	+				+1.1
3,474,761	-				-0.5
3,474,761	-				+0.4
3,474,761	-				+0.6
3,474,810	+				-2.6
3,474,810	+				+1.0
3,474,810	+				+1.9
3,474,810	+				+1.1
3,474,810	+				-2.4
3,474,810	+				-0.7
3,474,811	-				+0.3
3,474,811	-				+1.6
3,474,811	-				+0.2
3,474,811	-				+1.7
3,474,815	+				+0.4
3,474,815	+				-0.1
3,474,815	+				+0.8
3,474,815	+				-1.9
3,474,815	+				+0.1
3,474,816	-				-0.8
3,474,816	-				+0.8
3,474,816	-				-2.3
3,474,816	-				+0.9
3,474,816	-				+0.2
3,474,816	-				-3.2
3,474,816	-				-0.7
3,474,816	-				-1.9
3,474,816	-				+0.8
3,474,917	+		EFB2_03320	0.23	-0.7
3,474,917	+		EFB2_03320	0.23	+2.1
3,474,917	+		EFB2_03320	0.23	-0.9
3,474,924	+		EFB2_03320	0.24	-1.4
3,474,925	-		EFB2_03320	0.25	-1.4
3,474,927	+		EFB2_03320	0.25	-1.0
3,474,927	+		EFB2_03320	0.25	-2.4
3,474,928	-		EFB2_03320	0.25	-0.6
3,474,928	-		EFB2_03320	0.25	-2.4
3,474,928	-		EFB2_03320	0.25	-2.7
3,474,928	-		EFB2_03320	0.25	+1.5
3,474,928	-		EFB2_03320	0.25	-1.9
3,475,003	+		EFB2_03320	0.42	-1.3
3,475,004	-		EFB2_03320	0.42	+1.3
3,475,004	-		EFB2_03320	0.42	-1.4
3,475,004	-		EFB2_03320	0.42	-2.5
3,475,117	+		EFB2_03320	0.67	+1.5
3,475,144	-		EFB2_03320	0.73	+2.7
3,475,159	-		EFB2_03320	0.76	+0.9
3,475,175	-		EFB2_03320	0.80	+0.9
3,475,211	+		EFB2_03320	0.88	-2.3
3,475,212	-		EFB2_03320	0.88	-1.9
3,475,212	-		EFB2_03320	0.88	-1.4
3,475,222	+				-1.6
3,475,222	+				+1.1
3,475,269	+				-0.9
3,475,270	-				+0.8
3,475,270	-				+0.1
3,475,270	-				+0.1
3,475,270	-				-1.4
3,475,270	-				+1.4
3,475,507	+				+0.2
3,475,507	+				+0.6
3,475,508	-				-0.5
3,475,508	-				-1.8
3,475,527	-				+0.9
3,475,567	-		EFB2_03322	0.13	-3.1
3,475,583	+		EFB2_03322	0.16	-2.1
3,475,583	+		EFB2_03322	0.16	+3.1
3,475,584	-		EFB2_03322	0.16	-0.6
3,475,584	-		EFB2_03322	0.16	-1.0
3,475,612	+		EFB2_03322	0.22	-2.9
3,475,612	+		EFB2_03322	0.22	+2.1
3,475,612	+		EFB2_03322	0.22	-0.2
3,475,612	+		EFB2_03322	0.22	-0.1
3,475,612	+		EFB2_03322	0.22	+0.1
3,475,612	+		EFB2_03322	0.22	+2.0
3,475,613	-		EFB2_03322	0.22	-2.1
3,475,613	-		EFB2_03322	0.22	-0.2
3,475,613	-		EFB2_03322	0.22	-1.9
3,475,613	-		EFB2_03322	0.22	+0.1
3,475,613	-		EFB2_03322	0.22	-0.4
3,475,613	-		EFB2_03322	0.22	+2.4
3,475,613	-		EFB2_03322	0.22	+0.2
3,475,686	+		EFB2_03322	0.37	-0.7
3,475,686	+		EFB2_03322	0.37	-2.3
3,475,686	+		EFB2_03322	0.37	-0.9
3,475,687	-		EFB2_03322	0.37	-1.1
3,475,687	-		EFB2_03322	0.37	+1.0
3,475,687	-		EFB2_03322	0.37	+1.7
3,475,695	+		EFB2_03322	0.39	+2.7
3,475,695	+		EFB2_03322	0.39	+3.7
3,475,695	+		EFB2_03322	0.39	-2.3
3,475,696	-		EFB2_03322	0.39	-0.9
3,475,696	-		EFB2_03322	0.39	+0.5
3,475,696	-		EFB2_03322	0.39	-1.4
3,475,696	-		EFB2_03322	0.39	+0.9
3,475,697	+		EFB2_03322	0.39	-0.9
3,475,697	+		EFB2_03322	0.39	+1.2
3,475,697	+		EFB2_03322	0.39	+1.2
3,475,697	+		EFB2_03322	0.39	-0.7
3,475,697	+		EFB2_03322	0.39	+0.8
3,475,697	+		EFB2_03322	0.39	-1.5
3,475,697	+		EFB2_03322	0.39	-2.2
3,475,697	+		EFB2_03322	0.39	+1.3
3,475,697	+		EFB2_03322	0.39	-2.8
3,475,697	+		EFB2_03322	0.39	+1.0
3,475,697	+		EFB2_03322	0.39	+1.1
3,475,697	+		EFB2_03322	0.39	-1.7
3,475,697	+		EFB2_03322	0.39	-0.7
3,475,697	+		EFB2_03322	0.39	+0.1
3,475,698	-		EFB2_03322	0.40	+0.4
3,475,698	-		EFB2_03322	0.40	+1.1
3,475,698	-		EFB2_03322	0.40	-1.0
3,475,698	-		EFB2_03322	0.40	+0.8
3,475,698	-		EFB2_03322	0.40	-0.1
3,475,698	-		EFB2_03322	0.40	-0.2
3,475,698	-		EFB2_03322	0.40	-0.7
3,475,698	-		EFB2_03322	0.40	-1.7
3,475,698	-		EFB2_03322	0.40	-2.8
3,475,698	-		EFB2_03322	0.40	-0.1
3,475,698	-		EFB2_03322	0.40	-1.0
3,475,702	-		EFB2_03322	0.40	-0.5
3,475,702	-		EFB2_03322	0.40	+0.2
3,475,729	-		EFB2_03322	0.46	+2.1
3,475,729	-		EFB2_03322	0.46	+0.1
3,475,830	+		EFB2_03322	0.67	-0.2
3,475,830	+		EFB2_03322	0.67	+0.3
3,475,830	+		EFB2_03322	0.67	-0.4
3,475,830	+		EFB2_03322	0.67	+1.3
3,475,830	+		EFB2_03322	0.67	-0.2
3,475,831	-		EFB2_03322	0.67	-3.1
3,475,831	-		EFB2_03322	0.67	-1.2
3,475,831	-		EFB2_03322	0.67	+1.5
3,475,859	+		EFB2_03322	0.73	+0.6
3,475,859	+		EFB2_03322	0.73	-1.2
3,475,859	+		EFB2_03322	0.73	+1.0
3,475,860	-		EFB2_03322	0.73	-3.6
3,475,860	-		EFB2_03322	0.73	+0.1
3,475,860	-		EFB2_03322	0.73	+1.3
3,475,860	-		EFB2_03322	0.73	-1.1
3,475,974	-				+1.7
3,475,991	+				-3.6
3,475,991	+				-1.8
3,475,991	+				+0.6
3,475,991	+				-2.0
3,475,991	+				+0.4
3,475,991	+				+0.2
3,475,991	+				+0.6
3,475,991	+				-1.3
3,475,991	+				-0.1
3,475,991	+				-3.7
3,475,991	+				-0.3
3,475,991	+				+0.0
3,475,991	+				-1.0
3,475,992	-				+0.6
3,475,992	-				-0.3
3,475,992	-				-1.2
3,475,992	-				-0.2
3,475,992	-				-1.6
3,475,992	-				+2.2
3,475,992	-				-0.1
3,475,992	-				-1.2
3,475,992	-				-0.2
3,475,992	-				-1.2
3,475,992	-				-0.4
3,475,992	-				-1.7
3,475,992	-				+0.6
3,475,992	-				-0.4
3,475,995	+				-1.1
3,475,995	+				-1.9
3,475,995	+				-2.1
3,475,995	+				+1.0
3,475,995	+				-0.8
3,475,995	+				-1.6
3,475,995	+				+0.7
3,475,995	+				-2.4
3,475,995	+				-0.0
3,475,995	+				-0.2
3,475,995	+				+0.6
3,475,995	+				-0.9
3,475,995	+				-1.4
3,475,995	+				-0.5
3,475,995	+				-0.4
3,475,995	+				-0.7
3,475,995	+				+1.2
3,475,995	+				+1.1
3,475,995	+				+2.1
3,475,995	+				-1.2
3,475,995	+				-0.9
3,475,996	-				+0.1
3,475,996	-				+0.4
3,475,996	-				+0.1
3,475,996	-				-0.5
3,475,996	-				-3.3
3,475,996	-				-0.7
3,475,996	-				+0.4
3,475,996	-				-2.9
3,475,996	-				-0.2
3,475,996	-				+0.0
3,475,996	-				-2.9
3,475,996	-				+2.5
3,475,996	-				+1.7
3,475,996	-				-1.0
3,475,996	-				-0.2
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3,475,996	-				+0.6
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3,475,996	-				+0.8
3,475,996	-				-0.7
3,475,996	-				-1.3
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3,475,996	-				-0.9
3,475,996	-				-1.3
3,475,996	-				-2.1
3,475,996	-				+1.4
3,476,020	+				-2.8
3,476,020	+				-0.4
3,476,020	+				+0.6
3,476,020	+				-0.6
3,476,021	-				-0.3
3,476,060	-		EFB2_03323	0.13	-1.4
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3,476,281	+		EFB2_03323	0.56	+1.1
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3,476,344	-		EFB2_03323	0.68	-2.3
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3,476,450	-		EFB2_03323	0.89	+2.7
3,476,450	-		EFB2_03323	0.89	+5.9
3,476,450	-		EFB2_03323	0.89	-2.1
3,476,458	+				-0.1
3,476,459	-				+0.7
3,476,464	+				+0.9
3,476,464	+				-0.7
3,476,464	+				-2.2
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3,476,465	-				-0.9
3,476,465	-				+0.3
3,476,465	-				+0.8
3,476,495	+				+1.1
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3,476,496	-				-0.2
3,476,496	-				-0.0
3,476,496	-				-1.4
3,476,496	-				-0.1