Strain Fitness in Escherichia fergusonii Becca around EFB2_02981

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,115,717	+		EFB2_02980	0.34	-1.2
3,115,717	+		EFB2_02980	0.34	-1.0
3,115,750	+		EFB2_02980	0.38	+1.2
3,115,750	+		EFB2_02980	0.38	+3.1
3,115,750	+		EFB2_02980	0.38	+1.3
3,115,750	+		EFB2_02980	0.38	-0.7
3,115,750	+		EFB2_02980	0.38	+2.0
3,115,750	+		EFB2_02980	0.38	+0.2
3,115,750	+		EFB2_02980	0.38	-0.5
3,115,751	-		EFB2_02980	0.38	+1.7
3,115,751	-		EFB2_02980	0.38	+1.2
3,115,751	-		EFB2_02980	0.38	+0.3
3,115,751	-		EFB2_02980	0.38	+0.0
3,115,751	-		EFB2_02980	0.38	-1.3
3,115,751	-		EFB2_02980	0.38	+0.8
3,115,751	-		EFB2_02980	0.38	+0.3
3,115,751	-		EFB2_02980	0.38	-1.7
3,115,751	-		EFB2_02980	0.38	-1.3
3,115,763	-		EFB2_02980	0.39	+0.0
3,115,763	-		EFB2_02980	0.39	-1.8
3,115,764	+		EFB2_02980	0.39	+1.2
3,115,764	+		EFB2_02980	0.39	-0.3
3,115,764	+		EFB2_02980	0.39	+1.2
3,115,764	+		EFB2_02980	0.39	+0.0
3,115,764	+		EFB2_02980	0.39	+0.4
3,115,764	+		EFB2_02980	0.39	+0.8
3,115,764	+		EFB2_02980	0.39	-1.3
3,115,764	+		EFB2_02980	0.39	+2.2
3,115,764	+		EFB2_02980	0.39	-0.9
3,115,764	+		EFB2_02980	0.39	-1.8
3,115,764	+		EFB2_02980	0.39	+0.7
3,115,764	+		EFB2_02980	0.39	+0.8
3,115,764	+		EFB2_02980	0.39	-2.6
3,115,764	+		EFB2_02980	0.39	+5.9
3,115,764	+		EFB2_02980	0.39	+0.8
3,115,764	+		EFB2_02980	0.39	+0.7
3,115,764	+		EFB2_02980	0.39	-1.5
3,115,765	-		EFB2_02980	0.39	+0.2
3,115,765	-		EFB2_02980	0.39	-0.3
3,115,765	-		EFB2_02980	0.39	-2.9
3,115,765	-		EFB2_02980	0.39	-2.3
3,115,765	-		EFB2_02980	0.39	+0.2
3,115,765	-		EFB2_02980	0.39	-0.4
3,115,765	-		EFB2_02980	0.39	+0.8
3,115,765	-		EFB2_02980	0.39	+1.0
3,115,765	-		EFB2_02980	0.39	+1.5
3,115,765	-		EFB2_02980	0.39	-2.5
3,115,765	-		EFB2_02980	0.39	-1.3
3,115,765	-		EFB2_02980	0.39	-1.4
3,115,765	-		EFB2_02980	0.39	-0.2
3,115,765	-		EFB2_02980	0.39	-3.1
3,115,765	-		EFB2_02980	0.39	+0.3
3,115,765	-		EFB2_02980	0.39	+1.5
3,115,765	-		EFB2_02980	0.39	+0.2
3,115,765	-		EFB2_02980	0.39	+0.1
3,115,765	-		EFB2_02980	0.39	+1.3
3,115,765	-		EFB2_02980	0.39	+1.3
3,115,782	+		EFB2_02980	0.41	-1.0
3,115,782	+		EFB2_02980	0.41	-1.5
3,115,782	+		EFB2_02980	0.41	+1.5
3,115,782	+		EFB2_02980	0.41	-1.5
3,115,782	+		EFB2_02980	0.41	-1.1
3,115,782	+		EFB2_02980	0.41	+2.8
3,115,783	-		EFB2_02980	0.41	+1.2
3,115,783	-		EFB2_02980	0.41	+2.0
3,115,783	-		EFB2_02980	0.41	+0.8
3,115,783	-		EFB2_02980	0.41	-1.4
3,115,837	+		EFB2_02980	0.47	+1.4
3,115,838	-		EFB2_02980	0.47	-1.2
3,115,838	-		EFB2_02980	0.47	-0.1
3,115,838	-		EFB2_02980	0.47	+1.0
3,115,838	-		EFB2_02980	0.47	-0.7
3,115,840	+		EFB2_02980	0.47	+4.7
3,115,841	-		EFB2_02980	0.47	-1.4
3,115,841	-		EFB2_02980	0.47	+2.6
3,115,845	+		EFB2_02980	0.48	+0.7
3,115,845	+		EFB2_02980	0.48	+0.7
3,115,845	+		EFB2_02980	0.48	-0.4
3,115,846	-		EFB2_02980	0.48	-0.0
3,115,846	-		EFB2_02980	0.48	-1.3
3,115,846	-		EFB2_02980	0.48	-0.8
3,115,846	-		EFB2_02980	0.48	-0.8
3,115,860	-		EFB2_02980	0.49	+0.2
3,115,860	-		EFB2_02980	0.49	+0.4
3,115,874	+		EFB2_02980	0.51	-2.3
3,115,874	+		EFB2_02980	0.51	+0.6
3,115,874	+		EFB2_02980	0.51	+0.7
3,115,874	+		EFB2_02980	0.51	-3.2
3,115,874	+		EFB2_02980	0.51	-1.5
3,115,874	+		EFB2_02980	0.51	+1.7
3,115,874	+		EFB2_02980	0.51	-0.2
3,115,874	+		EFB2_02980	0.51	+2.2
3,115,874	+		EFB2_02980	0.51	+1.6
3,115,874	+		EFB2_02980	0.51	+0.6
3,115,875	-		EFB2_02980	0.51	+0.2
3,115,875	-		EFB2_02980	0.51	-1.0
3,115,875	-		EFB2_02980	0.51	-2.4
3,115,875	-		EFB2_02980	0.51	-0.0
3,115,875	-		EFB2_02980	0.51	+0.4
3,115,875	-		EFB2_02980	0.51	-0.4
3,115,875	-		EFB2_02980	0.51	-0.3
3,115,875	-		EFB2_02980	0.51	+0.2
3,115,875	-		EFB2_02980	0.51	-0.8
3,115,906	-		EFB2_02980	0.54	-1.7
3,115,911	+		EFB2_02980	0.55	-1.2
3,115,912	-		EFB2_02980	0.55	-2.3
3,115,912	-		EFB2_02980	0.55	-0.7
3,115,912	-		EFB2_02980	0.55	+1.4
3,115,912	-		EFB2_02980	0.55	-0.8
3,115,912	-		EFB2_02980	0.55	-0.1
3,115,937	+		EFB2_02980	0.57	-2.7
3,115,938	-		EFB2_02980	0.57	+2.2
3,115,938	-		EFB2_02980	0.57	-2.4
3,115,938	-		EFB2_02980	0.57	+0.0
3,115,938	-		EFB2_02980	0.57	+1.6
3,115,944	+		EFB2_02980	0.58	+0.0
3,115,944	+		EFB2_02980	0.58	+0.1
3,115,944	+		EFB2_02980	0.58	+1.3
3,115,944	+		EFB2_02980	0.58	-1.7
3,115,945	-		EFB2_02980	0.58	+1.5
3,115,953	+		EFB2_02980	0.59	+0.5
3,115,953	+		EFB2_02980	0.59	+0.7
3,115,953	+		EFB2_02980	0.59	+0.2
3,115,954	-		EFB2_02980	0.59	-0.4
3,115,999	+		EFB2_02980	0.64	+1.6
3,115,999	+		EFB2_02980	0.64	-0.1
3,115,999	+		EFB2_02980	0.64	+0.5
3,116,000	-		EFB2_02980	0.64	-1.5
3,116,000	-		EFB2_02980	0.64	+2.9
3,116,000	-		EFB2_02980	0.64	-0.5
3,116,000	-		EFB2_02980	0.64	+1.2
3,116,000	-		EFB2_02980	0.64	-1.8
3,116,000	-		EFB2_02980	0.64	+0.7
3,116,000	-		EFB2_02980	0.64	+5.0
3,116,002	-		EFB2_02980	0.64	+0.8
3,116,020	+		EFB2_02980	0.66	-1.5
3,116,020	+		EFB2_02980	0.66	+0.9
3,116,020	+		EFB2_02980	0.66	+2.6
3,116,021	-		EFB2_02980	0.66	-2.0
3,116,037	+		EFB2_02980	0.68	-2.1
3,116,037	+		EFB2_02980	0.68	-2.0
3,116,038	-		EFB2_02980	0.68	-1.2
3,116,038	-		EFB2_02980	0.68	+0.8
3,116,038	-		EFB2_02980	0.68	+0.1
3,116,044	+		EFB2_02980	0.68	-0.4
3,116,044	+		EFB2_02980	0.68	-0.2
3,116,044	+		EFB2_02980	0.68	-2.8
3,116,044	+		EFB2_02980	0.68	-1.0
3,116,044	+		EFB2_02980	0.68	+1.0
3,116,044	+		EFB2_02980	0.68	-0.8
3,116,045	-		EFB2_02980	0.69	+0.2
3,116,045	-		EFB2_02980	0.69	-1.3
3,116,045	-		EFB2_02980	0.69	+1.2
3,116,051	+		EFB2_02980	0.69	+2.2
3,116,051	+		EFB2_02980	0.69	-0.6
3,116,051	+		EFB2_02980	0.69	+1.5
3,116,051	+		EFB2_02980	0.69	+0.5
3,116,051	+		EFB2_02980	0.69	-1.4
3,116,051	+		EFB2_02980	0.69	+1.2
3,116,051	+		EFB2_02980	0.69	-0.3
3,116,051	+		EFB2_02980	0.69	-2.5
3,116,051	+		EFB2_02980	0.69	+1.2
3,116,051	+		EFB2_02980	0.69	-0.4
3,116,051	+		EFB2_02980	0.69	+0.8
3,116,051	+		EFB2_02980	0.69	-2.1
3,116,051	+		EFB2_02980	0.69	+1.6
3,116,052	-		EFB2_02980	0.69	+0.9
3,116,052	-		EFB2_02980	0.69	-0.2
3,116,052	-		EFB2_02980	0.69	-0.4
3,116,052	-		EFB2_02980	0.69	+0.4
3,116,052	-		EFB2_02980	0.69	-1.0
3,116,052	-		EFB2_02980	0.69	-0.8
3,116,052	-		EFB2_02980	0.69	+0.2
3,116,052	-		EFB2_02980	0.69	+0.9
3,116,052	-		EFB2_02980	0.69	-1.0
3,116,052	-		EFB2_02980	0.69	-2.1
3,116,052	-		EFB2_02980	0.69	-0.6
3,116,052	-		EFB2_02980	0.69	-0.4
3,116,052	-		EFB2_02980	0.69	+0.9
3,116,052	-		EFB2_02980	0.69	+0.6
3,116,052	-		EFB2_02980	0.69	+0.9
3,116,052	-		EFB2_02980	0.69	+1.2
3,116,052	-		EFB2_02980	0.69	-3.3
3,116,052	-		EFB2_02980	0.69	+0.4
3,116,091	+		EFB2_02980	0.73	+1.3
3,116,092	-		EFB2_02980	0.73	+0.1
3,116,097	+		EFB2_02980	0.74	+0.7
3,116,097	+		EFB2_02980	0.74	+0.2
3,116,097	+		EFB2_02980	0.74	-1.2
3,116,097	+		EFB2_02980	0.74	-1.6
3,116,097	+		EFB2_02980	0.74	+0.7
3,116,097	+		EFB2_02980	0.74	+1.0
3,116,097	+		EFB2_02980	0.74	-3.0
3,116,097	+		EFB2_02980	0.74	-3.1
3,116,097	+		EFB2_02980	0.74	+0.2
3,116,097	+		EFB2_02980	0.74	-0.7
3,116,097	+		EFB2_02980	0.74	-0.4
3,116,097	+		EFB2_02980	0.74	-1.2
3,116,097	+		EFB2_02980	0.74	+1.3
3,116,097	+		EFB2_02980	0.74	+2.3
3,116,097	+		EFB2_02980	0.74	-1.2
3,116,097	+		EFB2_02980	0.74	-1.9
3,116,098	-		EFB2_02980	0.74	+1.0
3,116,098	-		EFB2_02980	0.74	+0.5
3,116,098	-		EFB2_02980	0.74	+0.2
3,116,098	-		EFB2_02980	0.74	-0.1
3,116,098	-		EFB2_02980	0.74	-0.8
3,116,098	-		EFB2_02980	0.74	-1.4
3,116,098	-		EFB2_02980	0.74	+1.6
3,116,098	-		EFB2_02980	0.74	-0.0
3,116,098	-		EFB2_02980	0.74	-0.4
3,116,098	-		EFB2_02980	0.74	-0.1
3,116,098	-		EFB2_02980	0.74	-2.1
3,116,098	-		EFB2_02980	0.74	-2.5
3,116,098	-		EFB2_02980	0.74	-0.2
3,116,098	-		EFB2_02980	0.74	-1.0
3,116,098	-		EFB2_02980	0.74	-0.7
3,116,098	-		EFB2_02980	0.74	+1.3
3,116,098	-		EFB2_02980	0.74	-1.3
3,116,129	+		EFB2_02980	0.77	+1.4
3,116,129	+		EFB2_02980	0.77	-0.1
3,116,129	+		EFB2_02980	0.77	+1.2
3,116,130	-		EFB2_02980	0.77	-0.7
3,116,144	+		EFB2_02980	0.79	+2.2
3,116,145	-		EFB2_02980	0.79	-1.0
3,116,158	+		EFB2_02980	0.80	-0.2
3,116,172	+		EFB2_02980	0.82	+1.0
3,116,286	-				-2.3
3,116,287	+				+0.7
3,116,288	-				+1.0
3,116,288	-				-1.5
3,116,288	-				+1.8
3,116,288	-				-0.3
3,116,320	+				-1.5
3,116,364	-				-1.8
3,116,364	-				+1.0
3,116,416	+				+1.3
3,116,416	+				+0.6
3,116,417	-				-0.1
3,116,422	-				+0.6
3,116,431	+				+0.6
3,116,432	-				-1.1
3,116,433	+				+0.2
3,116,433	+				-0.2
3,116,434	-				-1.3
3,116,471	-		EFB2_02981	0.10	+1.0
3,116,471	-		EFB2_02981	0.10	+1.0
3,116,500	+		EFB2_02981	0.16	+0.4
3,116,521	+		EFB2_02981	0.21	+1.6
3,116,559	+		EFB2_02981	0.28	+1.4
3,116,559	+		EFB2_02981	0.28	-0.8
3,116,559	+		EFB2_02981	0.28	+1.3
3,116,559	+		EFB2_02981	0.28	+0.8
3,116,560	-		EFB2_02981	0.28	+0.0
3,116,560	-		EFB2_02981	0.28	-2.2
3,116,560	-		EFB2_02981	0.28	-0.8
3,116,560	-		EFB2_02981	0.28	+1.3
3,116,564	+		EFB2_02981	0.29	+0.6
3,116,588	+		EFB2_02981	0.34	-0.4
3,116,589	-		EFB2_02981	0.34	+1.0
3,116,589	-		EFB2_02981	0.34	+0.4
3,116,589	-		EFB2_02981	0.34	-1.5
3,116,595	-		EFB2_02981	0.36	-0.4
3,116,600	+		EFB2_02981	0.37	-2.4
3,116,602	+		EFB2_02981	0.37	-1.8
3,116,631	+		EFB2_02981	0.43	-1.2
3,116,680	+		EFB2_02981	0.53	-1.5
3,116,681	-		EFB2_02981	0.53	+1.0
3,116,728	+		EFB2_02981	0.63	+0.4
3,116,728	+		EFB2_02981	0.63	+0.2
3,116,729	-		EFB2_02981	0.63	+1.0
3,116,729	-		EFB2_02981	0.63	+0.2
3,116,729	-		EFB2_02981	0.63	+1.2
3,116,756	-		EFB2_02981	0.68	-1.8
3,116,756	-		EFB2_02981	0.68	-1.4
3,116,756	-		EFB2_02981	0.68	+0.4
3,116,774	+		EFB2_02981	0.72	-1.5
3,116,780	+		EFB2_02981	0.73	+0.0
3,116,797	+		EFB2_02981	0.77	-1.5
3,116,797	+		EFB2_02981	0.77	-1.8
3,116,797	+		EFB2_02981	0.77	+1.4