Strain Fitness in Escherichia fergusonii Becca around EFB2_02874

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,010,848	-		EFB2_02873	0.59	-0.4
3,010,910	+		EFB2_02873	0.62	-1.2
3,010,910	+		EFB2_02873	0.62	-2.0
3,010,910	+		EFB2_02873	0.62	+2.0
3,010,910	+		EFB2_02873	0.62	-2.0
3,010,910	+		EFB2_02873	0.62	+1.4
3,010,910	+		EFB2_02873	0.62	-0.4
3,010,910	+		EFB2_02873	0.62	+0.4
3,010,910	+		EFB2_02873	0.62	+1.4
3,010,910	+		EFB2_02873	0.62	+1.6
3,010,910	+		EFB2_02873	0.62	-0.7
3,010,910	+		EFB2_02873	0.62	-0.4
3,010,910	+		EFB2_02873	0.62	+0.1
3,010,911	-		EFB2_02873	0.62	+3.0
3,010,911	-		EFB2_02873	0.62	-0.1
3,010,911	-		EFB2_02873	0.62	+3.0
3,010,911	-		EFB2_02873	0.62	-1.6
3,010,911	-		EFB2_02873	0.62	-3.2
3,010,911	-		EFB2_02873	0.62	-1.1
3,010,911	-		EFB2_02873	0.62	+3.3
3,010,911	-		EFB2_02873	0.62	-0.1
3,010,911	-		EFB2_02873	0.62	-1.1
3,010,911	-		EFB2_02873	0.62	+0.0
3,010,911	-		EFB2_02873	0.62	+0.6
3,010,911	-		EFB2_02873	0.62	+0.4
3,010,921	+		EFB2_02873	0.62	-1.5
3,010,921	+		EFB2_02873	0.62	-1.9
3,010,921	+		EFB2_02873	0.62	-1.0
3,010,921	+		EFB2_02873	0.62	+0.0
3,010,921	+		EFB2_02873	0.62	-1.7
3,010,923	+		EFB2_02873	0.62	-1.4
3,010,923	+		EFB2_02873	0.62	-0.5
3,010,923	+		EFB2_02873	0.62	+0.6
3,010,923	+		EFB2_02873	0.62	+0.6
3,010,923	+		EFB2_02873	0.62	+0.5
3,010,923	+		EFB2_02873	0.62	+0.7
3,010,923	+		EFB2_02873	0.62	-2.9
3,010,923	+		EFB2_02873	0.62	-0.6
3,010,923	+		EFB2_02873	0.62	+1.0
3,010,923	+		EFB2_02873	0.62	+1.5
3,010,923	+		EFB2_02873	0.62	-2.9
3,010,923	+		EFB2_02873	0.62	+0.4
3,010,923	+		EFB2_02873	0.62	+0.2
3,010,923	+		EFB2_02873	0.62	-1.1
3,010,923	+		EFB2_02873	0.62	+0.2
3,010,923	+		EFB2_02873	0.62	-1.7
3,010,923	+		EFB2_02873	0.62	-0.9
3,010,923	+		EFB2_02873	0.62	-0.8
3,010,923	+		EFB2_02873	0.62	+0.6
3,010,923	+		EFB2_02873	0.62	-0.4
3,010,924	-		EFB2_02873	0.62	-2.5
3,010,924	-		EFB2_02873	0.62	+3.8
3,010,924	-		EFB2_02873	0.62	+1.1
3,010,924	-		EFB2_02873	0.62	+1.2
3,010,924	-		EFB2_02873	0.62	-0.1
3,010,924	-		EFB2_02873	0.62	-2.5
3,010,924	-		EFB2_02873	0.62	+0.8
3,010,924	-		EFB2_02873	0.62	+1.5
3,010,924	-		EFB2_02873	0.62	-0.8
3,010,924	-		EFB2_02873	0.62	+2.3
3,010,924	-		EFB2_02873	0.62	+2.5
3,010,924	-		EFB2_02873	0.62	-2.2
3,010,924	-		EFB2_02873	0.62	+0.6
3,010,924	-		EFB2_02873	0.62	-0.5
3,010,981	-		EFB2_02873	0.65	-0.6
3,010,981	-		EFB2_02873	0.65	+1.3
3,010,981	-		EFB2_02873	0.65	+0.2
3,010,981	-		EFB2_02873	0.65	-0.0
3,010,982	+		EFB2_02873	0.65	+0.5
3,010,982	+		EFB2_02873	0.65	+1.0
3,010,982	+		EFB2_02873	0.65	-2.0
3,010,982	+		EFB2_02873	0.65	-0.3
3,010,982	+		EFB2_02873	0.65	+0.3
3,010,982	+		EFB2_02873	0.65	-0.4
3,010,982	+		EFB2_02873	0.65	+1.4
3,010,982	+		EFB2_02873	0.65	-0.8
3,010,982	+		EFB2_02873	0.65	-0.3
3,010,982	+		EFB2_02873	0.65	-1.2
3,010,982	+		EFB2_02873	0.65	-1.0
3,010,982	+		EFB2_02873	0.65	+1.5
3,010,983	-		EFB2_02873	0.65	-0.4
3,010,983	-		EFB2_02873	0.65	+0.9
3,010,983	-		EFB2_02873	0.65	+1.2
3,010,983	-		EFB2_02873	0.65	-0.4
3,010,983	-		EFB2_02873	0.65	+1.8
3,010,983	-		EFB2_02873	0.65	-0.7
3,011,000	+		EFB2_02873	0.66	-1.6
3,011,001	-		EFB2_02873	0.66	-1.2
3,011,010	+		EFB2_02873	0.66	+0.1
3,011,010	+		EFB2_02873	0.66	-1.1
3,011,010	+		EFB2_02873	0.66	-0.2
3,011,010	+		EFB2_02873	0.66	+1.8
3,011,011	-		EFB2_02873	0.66	+0.9
3,011,011	-		EFB2_02873	0.66	+0.9
3,011,040	+		EFB2_02873	0.68	-0.4
3,011,041	-		EFB2_02873	0.68	-1.0
3,011,041	-		EFB2_02873	0.68	+1.3
3,011,082	+		EFB2_02873	0.70	-3.0
3,011,083	-		EFB2_02873	0.70	-3.0
3,011,083	-		EFB2_02873	0.70	+0.6
3,011,083	-		EFB2_02873	0.70	+1.3
3,011,091	+		EFB2_02873	0.70	-0.4
3,011,091	+		EFB2_02873	0.70	-0.0
3,011,091	+		EFB2_02873	0.70	-1.1
3,011,091	+		EFB2_02873	0.70	+0.9
3,011,091	+		EFB2_02873	0.70	+1.6
3,011,091	+		EFB2_02873	0.70	-1.6
3,011,091	+		EFB2_02873	0.70	-1.8
3,011,092	-		EFB2_02873	0.70	-1.7
3,011,092	-		EFB2_02873	0.70	+0.7
3,011,092	-		EFB2_02873	0.70	-0.6
3,011,092	-		EFB2_02873	0.70	-1.1
3,011,092	-		EFB2_02873	0.70	+0.9
3,011,092	-		EFB2_02873	0.70	+1.9
3,011,092	-		EFB2_02873	0.70	-1.8
3,011,092	-		EFB2_02873	0.70	+1.6
3,011,092	-		EFB2_02873	0.70	-1.2
3,011,092	-		EFB2_02873	0.70	-2.0
3,011,092	-		EFB2_02873	0.70	+0.7
3,011,092	-		EFB2_02873	0.70	-0.6
3,011,092	-		EFB2_02873	0.70	-0.3
3,011,092	-		EFB2_02873	0.70	-0.1
3,011,092	-		EFB2_02873	0.70	+3.2
3,011,092	-		EFB2_02873	0.70	-2.0
3,011,092	-		EFB2_02873	0.70	+2.8
3,011,092	-		EFB2_02873	0.70	+0.4
3,011,092	-		EFB2_02873	0.70	+0.5
3,011,093	+		EFB2_02873	0.70	-0.4
3,011,093	+		EFB2_02873	0.70	+1.4
3,011,093	+		EFB2_02873	0.70	-0.4
3,011,093	+		EFB2_02873	0.70	+1.9
3,011,093	+		EFB2_02873	0.70	+2.5
3,011,093	+		EFB2_02873	0.70	-2.5
3,011,093	+		EFB2_02873	0.70	+0.6
3,011,093	+		EFB2_02873	0.70	+0.2
3,011,093	+		EFB2_02873	0.70	-0.4
3,011,093	+		EFB2_02873	0.70	+1.8
3,011,093	+		EFB2_02873	0.70	+0.8
3,011,093	+		EFB2_02873	0.70	+0.1
3,011,093	+		EFB2_02873	0.70	+1.1
3,011,094	-		EFB2_02873	0.70	+0.2
3,011,094	-		EFB2_02873	0.70	-0.6
3,011,094	-		EFB2_02873	0.70	+0.4
3,011,094	-		EFB2_02873	0.70	+0.2
3,011,094	-		EFB2_02873	0.70	+0.7
3,011,094	-		EFB2_02873	0.70	+3.2
3,011,094	-		EFB2_02873	0.70	-2.2
3,011,094	-		EFB2_02873	0.70	-3.0
3,011,094	-		EFB2_02873	0.70	-1.1
3,011,094	-		EFB2_02873	0.70	+0.3
3,011,094	-		EFB2_02873	0.70	-1.4
3,011,094	-		EFB2_02873	0.70	-2.7
3,011,094	-		EFB2_02873	0.70	-0.6
3,011,094	-		EFB2_02873	0.70	+0.6
3,011,094	-		EFB2_02873	0.70	-0.6
3,011,094	-		EFB2_02873	0.70	+1.9
3,011,094	-		EFB2_02873	0.70	-1.1
3,011,094	-		EFB2_02873	0.70	+0.2
3,011,094	-		EFB2_02873	0.70	-0.3
3,011,100	-		EFB2_02873	0.70	-2.1
3,011,139	+		EFB2_02873	0.72	+0.8
3,011,139	+		EFB2_02873	0.72	-1.6
3,011,139	+		EFB2_02873	0.72	+1.9
3,011,140	-		EFB2_02873	0.72	-0.4
3,011,159	+		EFB2_02873	0.73	+0.1
3,011,166	+		EFB2_02873	0.73	+2.2
3,011,166	+		EFB2_02873	0.73	+0.6
3,011,166	+		EFB2_02873	0.73	-1.4
3,011,167	-		EFB2_02873	0.73	-1.7
3,011,167	-		EFB2_02873	0.73	+2.6
3,011,167	-		EFB2_02873	0.73	+2.5
3,011,167	-		EFB2_02873	0.73	-0.3
3,011,167	-		EFB2_02873	0.73	-2.3
3,011,167	-		EFB2_02873	0.73	+0.0
3,011,173	+		EFB2_02873	0.74	-0.5
3,011,173	+		EFB2_02873	0.74	+1.3
3,011,173	+		EFB2_02873	0.74	-1.6
3,011,173	+		EFB2_02873	0.74	+0.2
3,011,173	+		EFB2_02873	0.74	+0.6
3,011,173	+		EFB2_02873	0.74	-1.2
3,011,173	+		EFB2_02873	0.74	-1.3
3,011,173	+		EFB2_02873	0.74	+0.2
3,011,174	-		EFB2_02873	0.74	-2.0
3,011,174	-		EFB2_02873	0.74	+0.6
3,011,174	-		EFB2_02873	0.74	+0.4
3,011,231	+		EFB2_02873	0.76	-2.2
3,011,270	+		EFB2_02873	0.78	+0.3
3,011,270	+		EFB2_02873	0.78	+1.9
3,011,270	+		EFB2_02873	0.78	+0.6
3,011,271	-		EFB2_02873	0.78	+0.9
3,011,271	-		EFB2_02873	0.78	+0.4
3,011,271	-		EFB2_02873	0.78	-2.0
3,011,271	-		EFB2_02873	0.78	-0.1
3,011,299	-		EFB2_02873	0.79	-1.5
3,011,299	-		EFB2_02873	0.79	+1.7
3,011,299	-		EFB2_02873	0.79	-1.7
3,011,299	-		EFB2_02873	0.79	-1.0
3,011,300	+		EFB2_02873	0.80	-0.1
3,011,300	+		EFB2_02873	0.80	+1.5
3,011,300	+		EFB2_02873	0.80	-0.2
3,011,301	-		EFB2_02873	0.80	-2.2
3,011,325	-		EFB2_02873	0.81	+0.4
3,011,357	+		EFB2_02873	0.82	+0.7
3,011,358	-		EFB2_02873	0.82	-1.0
3,011,358	-		EFB2_02873	0.82	-2.5
3,011,358	-		EFB2_02873	0.82	+0.2
3,011,394	+		EFB2_02873	0.84	-1.4
3,011,394	+		EFB2_02873	0.84	-0.3
3,011,394	+		EFB2_02873	0.84	+1.0
3,011,395	-		EFB2_02873	0.84	+1.2
3,011,396	+		EFB2_02873	0.84	+1.0
3,011,396	+		EFB2_02873	0.84	-0.8
3,011,396	+		EFB2_02873	0.84	-1.5
3,011,396	+		EFB2_02873	0.84	-1.7
3,011,397	-		EFB2_02873	0.84	+0.3
3,011,397	-		EFB2_02873	0.84	-0.3
3,011,397	-		EFB2_02873	0.84	+1.7
3,011,432	+		EFB2_02873	0.86	-1.4
3,011,433	-		EFB2_02873	0.86	+1.0
3,011,453	+		EFB2_02873	0.87	-0.6
3,011,470	-		EFB2_02873	0.87	+1.4
3,011,513	+		EFB2_02873	0.89	+0.0
3,011,513	+		EFB2_02873	0.89	-1.4
3,011,514	-		EFB2_02873	0.89	+0.5
3,011,514	-		EFB2_02873	0.89	+0.8
3,011,514	-		EFB2_02873	0.89	-0.8
3,011,514	-		EFB2_02873	0.89	-2.0
3,011,514	-		EFB2_02873	0.89	-2.4
3,011,514	-		EFB2_02873	0.89	+0.7
3,011,532	+				+2.8
3,011,532	+				+1.0
3,011,532	+				+1.8
3,011,532	+				+0.6
3,011,532	+				+0.1
3,011,532	+				-0.8
3,011,532	+				-1.2
3,011,532	+				-0.3
3,011,533	-				-0.8
3,011,533	-				-0.1
3,011,533	-				+0.6
3,011,533	-				+1.9
3,011,533	-				-0.4
3,011,534	+				-1.5
3,011,553	+				+1.4
3,011,553	+				-2.8
3,011,554	-				+3.1
3,011,554	-				-1.4
3,011,579	+				-1.0
3,011,579	+				-1.9
3,011,579	+				-1.4
3,011,579	+				-1.1
3,011,579	+				+1.2
3,011,579	+				+0.3
3,011,579	+				-1.0
3,011,579	+				-3.2
3,011,579	+				+2.8
3,011,579	+				+1.0
3,011,579	+				+1.2
3,011,579	+				+0.5
3,011,580	-				-0.3
3,011,580	-				+1.6
3,011,580	-				-1.6
3,011,580	-				-0.8
3,011,580	-				+0.6
3,011,580	-				-0.0
3,011,580	-				-0.4
3,011,583	+				+0.7
3,011,584	-				+4.8
3,011,584	-				+1.4
3,011,584	-				-2.4
3,011,651	+				+1.2
3,011,670	+				-1.2
3,011,670	+				-1.8
3,011,670	+				+0.1
3,011,671	-				-0.3
3,011,671	-				-0.4
3,011,671	-				+0.5
3,011,671	-				+1.1
3,011,671	-				-2.0
3,011,671	-				+0.5
3,011,676	-				+1.2
3,011,693	+				-0.8
3,011,693	+				-0.1
3,011,693	+				+2.0
3,011,693	+				-1.8
3,011,694	-				-0.3
3,011,694	-				-0.1
3,011,694	-				-0.1
3,011,736	+				+2.1
3,011,736	+				-0.4
3,011,736	+				-1.0
3,011,736	+				-0.3
3,011,736	+				+1.8
3,011,737	-				+0.2
3,011,737	-				+0.2
3,011,737	-				-2.3
3,011,737	-				-1.3
3,011,737	-				+1.0
3,011,749	+				+0.6
3,011,749	+				-2.9
3,011,758	+				-1.3
3,011,759	-				-0.3
3,011,784	+				+0.6
3,011,784	+				-3.0
3,011,784	+				-2.2
3,011,785	-				+0.7
3,011,785	-				-0.6
3,011,785	-				+1.3
3,011,785	-				+0.2
3,011,785	-				-1.7
3,011,785	-				-1.7
3,011,785	-				-0.8
3,011,785	-				+0.5
3,011,809	-				-1.3
3,011,823	+				-1.3
3,011,823	+				+0.2
3,011,823	+				+0.7
3,011,823	+				-2.5
3,011,823	+				+0.9
3,011,823	+				-1.0
3,011,823	+				-2.2
3,011,824	-				-0.1
3,011,824	-				-0.5
3,011,824	-				-0.1
3,011,824	-				-2.3
3,011,824	-				-0.4
3,011,824	-				-0.3
3,011,824	-				+1.9
3,011,824	-				-0.4
3,011,824	-				-0.9
3,011,824	-				-3.0
3,011,824	-				-0.9
3,011,824	-				-0.5
3,011,824	-				-0.8
3,011,824	-				-1.6
3,011,857	+				-1.1
3,011,857	+				+0.0
3,011,898	-				+0.2
3,011,898	-				-1.0
3,011,941	+				+1.6
3,011,942	-				+0.1
3,011,942	-				-2.9
3,011,977	+		EFB2_02874	0.12	-1.6
3,011,977	+		EFB2_02874	0.12	+0.5
3,011,977	+		EFB2_02874	0.12	-1.2
3,011,977	+		EFB2_02874	0.12	+0.7
3,011,977	+		EFB2_02874	0.12	-0.5
3,011,977	+		EFB2_02874	0.12	+2.0
3,011,977	+		EFB2_02874	0.12	-0.9
3,011,977	+		EFB2_02874	0.12	+3.0
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