Strain Fitness in Escherichia fergusonii Becca around EFB2_01970

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,127,418	+				+1.0
2,127,419	-				-2.1
2,127,449	+				-0.8
2,127,450	-				-1.1
2,127,451	+				+1.0
2,127,451	+				+0.5
2,127,504	-				-0.2
2,127,527	-				+1.0
2,127,566	+				-1.3
2,127,567	-				-1.0
2,127,567	-				+1.6
2,127,589	-				-3.1
2,127,591	+				-1.6
2,127,616	-				+0.5
2,127,617	+				-0.4
2,127,617	+				-1.2
2,127,629	+				-0.8
2,127,639	+				-0.8
2,127,639	+				-1.9
2,127,639	+				-1.6
2,127,639	+				+2.0
2,127,639	+				-1.0
2,127,639	+				+1.0
2,127,640	-				+0.7
2,127,640	-				+1.2
2,127,680	+		EFB2_01969	0.12	-0.5
2,127,818	-		EFB2_01969	0.39	+1.6
2,127,818	-		EFB2_01969	0.39	-1.0
2,127,836	+		EFB2_01969	0.43	+1.2
2,127,926	+		EFB2_01969	0.60	+1.0
2,127,941	+		EFB2_01969	0.63	-0.2
2,127,941	+		EFB2_01969	0.63	-2.3
2,127,995	+		EFB2_01969	0.74	-1.4
2,128,039	+		EFB2_01969	0.83	-1.4
2,128,040	-		EFB2_01969	0.83	-0.7
2,128,044	-		EFB2_01969	0.84	-2.0
2,128,056	-		EFB2_01969	0.86	+0.8
2,128,087	-				-2.1
2,128,087	-				+1.3
2,128,091	-				-2.4
2,128,097	+				+2.2
2,128,118	-				-0.4
2,128,138	+				-2.7
2,128,150	+				+0.6
2,128,206	+				+1.2
2,128,406	-		EFB2_01970	0.16	-0.2
2,128,493	+		EFB2_01970	0.25	-1.2
2,128,534	+		EFB2_01970	0.30	+0.4
2,128,971	+		EFB2_01970	0.77	+0.5
2,129,019	-		EFB2_01970	0.82	-2.1
2,129,045	+		EFB2_01970	0.85	+1.2
2,129,119	-				+0.6
2,129,119	-				-3.0
2,129,122	+				-0.1
2,129,122	+				+1.2
2,129,193	+				-1.8
2,129,193	+				-1.5
2,129,197	+				-0.6
2,129,197	+				-0.1
2,129,198	-				-1.6
2,129,237	+				+2.5
2,129,237	+				+1.9
2,129,237	+				+2.2
2,129,237	+				+1.2
2,129,237	+				+0.0
2,129,238	-				+0.3
2,129,240	+				-0.3
2,129,240	+				-2.1
2,129,241	-				-2.5
2,129,283	+				+2.1
2,129,283	+				+0.4
2,129,308	+				+0.1
2,129,309	-				+3.4
2,129,310	+				-0.0
2,129,310	+				-0.4
2,129,380	-				+1.7
2,129,382	+				-0.4
2,129,382	+				+1.2
2,129,382	+				-2.3
2,129,399	+		EFB2_01971	0.11	-0.4
2,129,400	-		EFB2_01971	0.11	-2.2
2,129,428	-		EFB2_01971	0.13	-2.0
2,129,439	+		EFB2_01971	0.13	-2.2
2,129,499	-		EFB2_01971	0.17	-1.2
2,129,499	-		EFB2_01971	0.17	-2.1
2,129,499	-		EFB2_01971	0.17	-2.6
2,129,499	-		EFB2_01971	0.17	+3.1
2,129,512	-		EFB2_01971	0.18	-1.1
2,129,517	+		EFB2_01971	0.18	+0.2
2,129,517	+		EFB2_01971	0.18	+0.9
2,129,517	+		EFB2_01971	0.18	-1.9
2,129,518	-		EFB2_01971	0.19	+1.8
2,129,518	-		EFB2_01971	0.19	-2.6
2,129,538	+		EFB2_01971	0.20	-0.3
2,129,538	+		EFB2_01971	0.20	-2.4
2,129,560	+		EFB2_01971	0.21	+1.1
2,129,560	+		EFB2_01971	0.21	-0.1
2,129,561	-		EFB2_01971	0.21	-0.7
2,129,561	-		EFB2_01971	0.21	-0.7
2,129,584	+		EFB2_01971	0.23	+0.1
2,129,585	-		EFB2_01971	0.23	-2.1
2,129,585	-		EFB2_01971	0.23	-1.6
2,129,585	-		EFB2_01971	0.23	+0.2
2,129,585	-		EFB2_01971	0.23	-0.9
2,129,585	-		EFB2_01971	0.23	-1.9
2,129,593	+		EFB2_01971	0.24	-0.0
2,129,593	+		EFB2_01971	0.24	-0.1
2,129,594	-		EFB2_01971	0.24	-1.1
2,129,594	-		EFB2_01971	0.24	-1.1
2,129,594	-		EFB2_01971	0.24	+2.2
2,129,646	+		EFB2_01971	0.27	+0.6
2,129,646	+		EFB2_01971	0.27	-1.9
2,129,646	+		EFB2_01971	0.27	-1.2
2,129,646	+		EFB2_01971	0.27	-2.6
2,129,646	+		EFB2_01971	0.27	+0.2
2,129,646	+		EFB2_01971	0.27	+1.1
2,129,647	-		EFB2_01971	0.27	-1.7
2,129,647	-		EFB2_01971	0.27	+2.2
2,129,647	-		EFB2_01971	0.27	-0.8
2,129,650	+		EFB2_01971	0.27	+0.3
2,129,650	+		EFB2_01971	0.27	+1.0
2,129,650	+		EFB2_01971	0.27	-0.5
2,129,650	+		EFB2_01971	0.27	-0.3
2,129,650	+		EFB2_01971	0.27	-1.1
2,129,650	+		EFB2_01971	0.27	-2.4
2,129,650	+		EFB2_01971	0.27	+1.2
2,129,650	+		EFB2_01971	0.27	+2.0
2,129,650	+		EFB2_01971	0.27	-1.5
2,129,650	+		EFB2_01971	0.27	+1.1
2,129,650	+		EFB2_01971	0.27	+1.2
2,129,650	+		EFB2_01971	0.27	+1.7
2,129,650	+		EFB2_01971	0.27	-2.4
2,129,651	-		EFB2_01971	0.27	-2.3
2,129,651	-		EFB2_01971	0.27	+1.1
2,129,651	-		EFB2_01971	0.27	+5.5
2,129,651	-		EFB2_01971	0.27	-2.2
2,129,651	-		EFB2_01971	0.27	-0.6
2,129,651	-		EFB2_01971	0.27	+1.8
2,129,651	-		EFB2_01971	0.27	-1.3
2,129,703	+		EFB2_01971	0.31	+0.1
2,129,703	+		EFB2_01971	0.31	-1.0
2,129,703	+		EFB2_01971	0.31	-0.8
2,129,761	+		EFB2_01971	0.35	-1.1
2,129,761	+		EFB2_01971	0.35	+2.7
2,129,762	-		EFB2_01971	0.35	+0.6
2,129,762	-		EFB2_01971	0.35	+1.0
2,129,767	-		EFB2_01971	0.35	-1.1
2,129,767	-		EFB2_01971	0.35	-1.4
2,129,767	-		EFB2_01971	0.35	+3.0
2,129,767	-		EFB2_01971	0.35	-0.4
2,129,775	+		EFB2_01971	0.36	-0.4
2,129,775	+		EFB2_01971	0.36	-1.9
2,129,775	+		EFB2_01971	0.36	-1.8
2,129,784	+		EFB2_01971	0.36	-0.1
2,129,820	+		EFB2_01971	0.39	+1.4
2,129,820	+		EFB2_01971	0.39	+1.2
2,129,820	+		EFB2_01971	0.39	-0.1
2,129,821	-		EFB2_01971	0.39	-1.6
2,129,821	-		EFB2_01971	0.39	+0.2
2,129,821	-		EFB2_01971	0.39	+0.6
2,129,848	+		EFB2_01971	0.41	-0.1
2,129,848	+		EFB2_01971	0.41	-2.6
2,129,848	+		EFB2_01971	0.41	-0.6
2,129,848	+		EFB2_01971	0.41	+1.9
2,129,849	-		EFB2_01971	0.41	+0.7
2,129,901	+		EFB2_01971	0.44	+0.8
2,129,901	+		EFB2_01971	0.44	+0.0
2,129,901	+		EFB2_01971	0.44	+0.7
2,129,902	-		EFB2_01971	0.44	+4.0
2,129,902	-		EFB2_01971	0.44	-0.4
2,129,908	-		EFB2_01971	0.45	+0.5
2,129,941	+		EFB2_01971	0.47	-1.0
2,129,941	+		EFB2_01971	0.47	+2.2
2,129,941	+		EFB2_01971	0.47	-0.7
2,129,941	+		EFB2_01971	0.47	-2.4
2,129,941	+		EFB2_01971	0.47	+1.1
2,129,942	-		EFB2_01971	0.47	-1.6
2,129,958	+		EFB2_01971	0.48	-1.1
2,129,958	+		EFB2_01971	0.48	+1.6
2,129,958	+		EFB2_01971	0.48	+1.6
2,129,959	-		EFB2_01971	0.48	-0.6
2,129,959	-		EFB2_01971	0.48	+0.2
2,129,959	-		EFB2_01971	0.48	-0.0
2,129,959	-		EFB2_01971	0.48	+1.4
2,129,959	-		EFB2_01971	0.48	+0.9
2,129,960	+		EFB2_01971	0.48	+2.0
2,129,960	+		EFB2_01971	0.48	-0.1
2,129,960	+		EFB2_01971	0.48	-0.2
2,129,960	+		EFB2_01971	0.48	-1.7
2,129,960	+		EFB2_01971	0.48	+0.6
2,129,960	+		EFB2_01971	0.48	+1.7
2,129,960	+		EFB2_01971	0.48	-1.5
2,129,960	+		EFB2_01971	0.48	-0.8
2,129,960	+		EFB2_01971	0.48	+1.2
2,129,960	+		EFB2_01971	0.48	-0.1
2,129,960	+		EFB2_01971	0.48	-1.2
2,129,961	-		EFB2_01971	0.48	-1.4
2,129,961	-		EFB2_01971	0.48	+2.0
2,129,961	-		EFB2_01971	0.48	-0.9
2,129,961	-		EFB2_01971	0.48	-2.7
2,129,961	-		EFB2_01971	0.48	-1.4
2,129,961	-		EFB2_01971	0.48	-2.5
2,129,961	-		EFB2_01971	0.48	-2.3
2,129,961	-		EFB2_01971	0.48	+0.8
2,129,980	+		EFB2_01971	0.49	+0.3
2,129,980	+		EFB2_01971	0.49	-0.4
2,129,980	+		EFB2_01971	0.49	-1.2
2,129,981	-		EFB2_01971	0.49	+0.3
2,129,981	-		EFB2_01971	0.49	+0.2
2,129,981	-		EFB2_01971	0.49	+0.8
2,130,045	+		EFB2_01971	0.54	-0.2
2,130,045	+		EFB2_01971	0.54	+2.2
2,130,046	-		EFB2_01971	0.54	-2.0
2,130,046	-		EFB2_01971	0.54	-0.8