Strain Fitness in Escherichia fergusonii Becca around EFB2_01812

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,927,547	+		EFB2_01811	0.44	+3.8
1,927,547	+		EFB2_01811	0.44	-1.3
1,927,547	+		EFB2_01811	0.44	-0.9
1,927,581	+		EFB2_01811	0.46	+2.0
1,927,586	+		EFB2_01811	0.47	+2.1
1,927,586	+		EFB2_01811	0.47	+0.1
1,927,586	+		EFB2_01811	0.47	-0.8
1,927,587	-		EFB2_01811	0.47	+1.4
1,927,587	-		EFB2_01811	0.47	+2.1
1,927,587	-		EFB2_01811	0.47	-0.7
1,927,587	-		EFB2_01811	0.47	-1.9
1,927,587	-		EFB2_01811	0.47	+0.4
1,927,587	-		EFB2_01811	0.47	-1.4
1,927,590	-		EFB2_01811	0.47	-0.5
1,927,618	+		EFB2_01811	0.49	-0.1
1,927,619	-		EFB2_01811	0.49	-1.2
1,927,638	+		EFB2_01811	0.50	-3.4
1,927,638	+		EFB2_01811	0.50	-0.7
1,927,638	+		EFB2_01811	0.50	+1.3
1,927,638	+		EFB2_01811	0.50	-1.4
1,927,638	+		EFB2_01811	0.50	-0.5
1,927,638	+		EFB2_01811	0.50	+0.4
1,927,638	+		EFB2_01811	0.50	+0.3
1,927,638	+		EFB2_01811	0.50	-3.0
1,927,638	+		EFB2_01811	0.50	-2.7
1,927,638	+		EFB2_01811	0.50	-0.4
1,927,638	+		EFB2_01811	0.50	-2.6
1,927,638	+		EFB2_01811	0.50	-0.7
1,927,638	+		EFB2_01811	0.50	+0.6
1,927,638	+		EFB2_01811	0.50	-1.6
1,927,638	+		EFB2_01811	0.50	-0.7
1,927,638	+		EFB2_01811	0.50	+1.3
1,927,639	-		EFB2_01811	0.50	-1.9
1,927,639	-		EFB2_01811	0.50	-1.1
1,927,639	-		EFB2_01811	0.50	+0.7
1,927,639	-		EFB2_01811	0.50	+1.7
1,927,639	-		EFB2_01811	0.50	+1.4
1,927,639	-		EFB2_01811	0.50	+0.3
1,927,639	-		EFB2_01811	0.50	-2.4
1,927,639	-		EFB2_01811	0.50	-2.4
1,927,639	-		EFB2_01811	0.50	-0.4
1,927,639	-		EFB2_01811	0.50	+0.6
1,927,639	-		EFB2_01811	0.50	-0.7
1,927,639	-		EFB2_01811	0.50	-2.3
1,927,639	-		EFB2_01811	0.50	-0.4
1,927,643	+		EFB2_01811	0.51	-2.6
1,927,643	+		EFB2_01811	0.51	+3.5
1,927,643	+		EFB2_01811	0.51	-0.3
1,927,644	-		EFB2_01811	0.51	-0.2
1,927,644	-		EFB2_01811	0.51	+1.3
1,927,644	-		EFB2_01811	0.51	-1.0
1,927,646	+		EFB2_01811	0.51	+1.0
1,927,646	+		EFB2_01811	0.51	+0.9
1,927,646	+		EFB2_01811	0.51	-1.1
1,927,646	+		EFB2_01811	0.51	+0.1
1,927,646	+		EFB2_01811	0.51	-0.6
1,927,646	+		EFB2_01811	0.51	-0.4
1,927,646	+		EFB2_01811	0.51	+0.1
1,927,646	+		EFB2_01811	0.51	+0.1
1,927,646	+		EFB2_01811	0.51	+1.2
1,927,646	+		EFB2_01811	0.51	+0.5
1,927,647	-		EFB2_01811	0.51	-0.7
1,927,647	-		EFB2_01811	0.51	+0.2
1,927,647	-		EFB2_01811	0.51	-1.2
1,927,647	-		EFB2_01811	0.51	+1.5
1,927,647	-		EFB2_01811	0.51	-1.0
1,927,647	-		EFB2_01811	0.51	-0.3
1,927,647	-		EFB2_01811	0.51	+1.8
1,927,650	+		EFB2_01811	0.51	-0.5
1,927,666	+		EFB2_01811	0.52	-2.3
1,927,692	-		EFB2_01811	0.54	+2.5
1,927,769	+		EFB2_01811	0.60	+0.7
1,927,772	+		EFB2_01811	0.60	+0.4
1,927,772	+		EFB2_01811	0.60	-0.2
1,927,790	+		EFB2_01811	0.61	+0.3
1,927,802	+		EFB2_01811	0.62	-1.2
1,927,802	+		EFB2_01811	0.62	+1.4
1,927,803	-		EFB2_01811	0.62	-1.2
1,927,803	-		EFB2_01811	0.62	+0.6
1,927,803	-		EFB2_01811	0.62	+0.4
1,927,823	+		EFB2_01811	0.64	-0.6
1,927,823	+		EFB2_01811	0.64	+0.5
1,927,824	-		EFB2_01811	0.64	-1.9
1,927,824	-		EFB2_01811	0.64	+0.9
1,927,824	-		EFB2_01811	0.64	+1.6
1,927,827	+		EFB2_01811	0.64	-1.8
1,927,827	+		EFB2_01811	0.64	-1.4
1,927,827	+		EFB2_01811	0.64	+0.6
1,927,828	-		EFB2_01811	0.64	-3.8
1,927,828	-		EFB2_01811	0.64	+1.5
1,927,857	-		EFB2_01811	0.66	+0.9
1,927,869	-		EFB2_01811	0.67	-0.9
1,927,871	+		EFB2_01811	0.67	+1.1
1,927,871	+		EFB2_01811	0.67	-1.1
1,927,885	+		EFB2_01811	0.68	+1.3
1,927,904	+		EFB2_01811	0.69	+0.8
1,927,904	+		EFB2_01811	0.69	-0.6
1,927,904	+		EFB2_01811	0.69	-0.9
1,927,904	+		EFB2_01811	0.69	-1.8
1,927,904	+		EFB2_01811	0.69	-0.4
1,927,905	-		EFB2_01811	0.69	-3.1
1,927,905	-		EFB2_01811	0.69	-0.9
1,927,914	+		EFB2_01811	0.70	+1.1
1,927,914	+		EFB2_01811	0.70	+1.0
1,927,924	+		EFB2_01811	0.71	+1.5
1,927,947	-		EFB2_01811	0.72	-2.3
1,927,950	-		EFB2_01811	0.73	+1.9
1,927,962	-		EFB2_01811	0.74	-2.1
1,927,964	+		EFB2_01811	0.74	+0.5
1,927,964	+		EFB2_01811	0.74	+1.6
1,927,977	+		EFB2_01811	0.75	+0.1
1,927,978	-		EFB2_01811	0.75	-0.3
1,928,036	+		EFB2_01811	0.79	+0.1
1,928,036	+		EFB2_01811	0.79	-0.3
1,928,036	+		EFB2_01811	0.79	-0.5
1,928,068	+		EFB2_01811	0.81	-0.6
1,928,068	+		EFB2_01811	0.81	+0.2
1,928,069	-		EFB2_01811	0.81	+1.3
1,928,183	+		EFB2_01811	0.89	-1.4
1,928,184	-		EFB2_01811	0.89	-0.8
1,928,203	+				-2.1
1,928,203	+				+0.1
1,928,203	+				-2.0
1,928,203	+				+1.5
1,928,203	+				+0.9
1,928,204	-				+2.1
1,928,204	-				-0.7
1,928,204	-				-0.6
1,928,204	-				-1.9
1,928,204	-				-1.0
1,928,204	-				+1.4
1,928,204	-				-0.4
1,928,204	-				+1.1
1,928,204	-				-1.3
1,928,270	-				-0.5
1,928,279	+				+1.5
1,928,279	+				-0.4
1,928,280	-				+0.3
1,928,286	-				+0.4
1,928,306	+				-2.4
1,928,307	-				+0.2
1,928,307	-				-1.4
1,928,328	+				-0.2
1,928,328	+				+1.7
1,928,329	-				-0.6
1,928,329	-				-0.4
1,928,329	-				+0.9
1,928,329	-				-1.7
1,928,329	-				-0.7
1,928,362	+				-0.7
1,928,362	+				+1.7
1,928,362	+				+0.2
1,928,362	+				-1.5
1,928,362	+				+1.4
1,928,362	+				+0.6
1,928,362	+				+1.7
1,928,362	+				-0.1
1,928,362	+				-2.1
1,928,362	+				-0.8
1,928,362	+				-1.2
1,928,362	+				+0.6
1,928,362	+				-2.7
1,928,363	-				+0.1
1,928,363	-				-0.2
1,928,363	-				+1.4
1,928,363	-				+0.2
1,928,363	-				-1.3
1,928,363	-				-1.0
1,928,363	-				+1.0
1,928,363	-				-3.4
1,928,363	-				-1.0
1,928,363	-				+0.3
1,928,363	-				+0.3
1,928,363	-				-3.1
1,928,363	-				-1.9
1,928,363	-				-1.4
1,928,363	-				-0.9
1,928,363	-				+0.9
1,928,363	-				+1.9
1,928,363	-				+0.4
1,928,366	+				+1.4
1,928,366	+				-3.1
1,928,366	+				-1.9
1,928,366	+				+1.1
1,928,366	+				+1.1
1,928,367	-				+0.3
1,928,367	-				-3.3
1,928,367	-				+2.9
1,928,367	-				+0.7
1,928,367	-				+0.1
1,928,367	-				+0.7
1,928,379	-				-0.2
1,928,403	+				-0.8
1,928,415	+				+0.5
1,928,415	+				-1.3
1,928,415	+				+0.6
1,928,415	+				+0.6
1,928,416	-				-0.3
1,928,416	-				+0.8
1,928,416	-				-1.3
1,928,437	+				-1.7
1,928,469	+				-0.1
1,928,469	+				-2.6
1,928,469	+				-0.3
1,928,469	+				+0.5
1,928,469	+				-1.4
1,928,469	+				-1.9
1,928,470	-				+0.1
1,928,470	-				-1.9
1,928,470	-				+1.7
1,928,471	+				+0.7
1,928,471	+				-0.3
1,928,471	+				-3.1
1,928,471	+				+0.5
1,928,471	+				+0.1
1,928,471	+				+0.7
1,928,471	+				+0.3
1,928,472	-				-0.7
1,928,472	-				+0.4
1,928,472	-				-1.5
1,928,472	-				-1.2
1,928,472	-				+0.6
1,928,503	+				-0.7
1,928,503	+				+0.1
1,928,503	+				+0.7
1,928,504	-				+1.3
1,928,515	+				-3.6
1,928,525	+				-1.3
1,928,525	+				+0.0
1,928,525	+				+2.6
1,928,525	+				+0.1
1,928,552	+				+0.3
1,928,552	+				-0.1
1,928,552	+				-1.4
1,928,552	+				-2.3
1,928,552	+				+1.0
1,928,552	+				+0.7
1,928,552	+				-0.9
1,928,552	+				+0.9
1,928,552	+				+0.4
1,928,552	+				+1.7
1,928,552	+				-0.9
1,928,552	+				-1.3
1,928,552	+				+1.2
1,928,552	+				+0.7
1,928,552	+				-0.7
1,928,552	+				+0.6
1,928,552	+				+1.9
1,928,552	+				+0.7
1,928,552	+				-0.3
1,928,552	+				+0.8
1,928,552	+				-2.3
1,928,552	+				-0.7
1,928,552	+				-0.4
1,928,552	+				-0.8
1,928,552	+				-0.8
1,928,552	+				-2.4
1,928,552	+				+0.3
1,928,552	+				-2.3
1,928,552	+				+0.6
1,928,552	+				+1.0
1,928,552	+				-1.3
1,928,552	+				-2.6
1,928,552	+				+0.2
1,928,552	+				+0.2
1,928,552	+				+1.6
1,928,552	+				-0.7
1,928,552	+				-0.5
1,928,552	+				+0.5
1,928,553	-				-1.3
1,928,553	-				-0.4
1,928,553	-				-3.8
1,928,553	-				+0.3
1,928,553	-				+2.6
1,928,553	-				+0.1
1,928,553	-				+2.1
1,928,553	-				+0.6
1,928,553	-				+3.1
1,928,553	-				-1.0
1,928,590	+				-0.4
1,928,619	+		EFB2_01812	0.13	+0.3
1,928,619	+		EFB2_01812	0.13	-0.1
1,928,619	+		EFB2_01812	0.13	-0.4
1,928,619	+		EFB2_01812	0.13	+1.2
1,928,619	+		EFB2_01812	0.13	-1.0
1,928,620	-		EFB2_01812	0.13	-2.3
1,928,620	-		EFB2_01812	0.13	-2.1
1,928,715	+		EFB2_01812	0.23	-0.2
1,928,715	+		EFB2_01812	0.23	+1.1
1,928,715	+		EFB2_01812	0.23	-0.9
1,928,715	+		EFB2_01812	0.23	-0.4
1,928,716	-		EFB2_01812	0.24	+1.1
1,928,716	-		EFB2_01812	0.24	+0.1
1,928,716	-		EFB2_01812	0.24	-2.4
1,928,716	-		EFB2_01812	0.24	+0.6
1,928,723	-		EFB2_01812	0.24	-0.9
1,928,723	-		EFB2_01812	0.24	-2.0
1,928,770	+		EFB2_01812	0.30	-0.5
1,928,770	+		EFB2_01812	0.30	-1.2
1,928,801	+		EFB2_01812	0.33	+0.1
1,928,801	+		EFB2_01812	0.33	+1.1
1,928,801	+		EFB2_01812	0.33	+1.4
1,928,801	+		EFB2_01812	0.33	-0.3
1,928,801	+		EFB2_01812	0.33	+0.4
1,928,801	+		EFB2_01812	0.33	+1.3
1,928,801	+		EFB2_01812	0.33	+0.3
1,928,801	+		EFB2_01812	0.33	-0.9
1,928,801	+		EFB2_01812	0.33	+1.1
1,928,801	+		EFB2_01812	0.33	+0.5
1,928,801	+		EFB2_01812	0.33	+0.6
1,928,801	+		EFB2_01812	0.33	-0.2
1,928,802	-		EFB2_01812	0.33	+0.1
1,928,802	-		EFB2_01812	0.33	-0.7
1,928,802	-		EFB2_01812	0.33	+1.1
1,928,802	-		EFB2_01812	0.33	-1.4
1,928,802	-		EFB2_01812	0.33	-1.8
1,928,827	+		EFB2_01812	0.36	-0.1
1,928,827	+		EFB2_01812	0.36	+0.7
1,928,827	+		EFB2_01812	0.36	+0.8
1,928,827	+		EFB2_01812	0.36	-0.5
1,928,848	+		EFB2_01812	0.38	-0.7
1,928,848	+		EFB2_01812	0.38	-1.0
1,928,848	+		EFB2_01812	0.38	+1.1
1,928,848	+		EFB2_01812	0.38	-1.4
1,928,849	-		EFB2_01812	0.38	-1.4
1,928,937	+		EFB2_01812	0.48	+2.6
1,928,937	+		EFB2_01812	0.48	-1.0
1,928,937	+		EFB2_01812	0.48	+0.1
1,928,938	-		EFB2_01812	0.48	-0.9
1,929,002	+		EFB2_01812	0.56	+0.3
1,929,002	+		EFB2_01812	0.56	-0.5
1,929,002	+		EFB2_01812	0.56	-3.5
1,929,002	+		EFB2_01812	0.56	+1.8
1,929,002	+		EFB2_01812	0.56	+0.3
1,929,002	+		EFB2_01812	0.56	-2.0
1,929,002	+		EFB2_01812	0.56	-0.7
1,929,002	+		EFB2_01812	0.56	-1.3
1,929,003	-		EFB2_01812	0.56	-0.7
1,929,003	-		EFB2_01812	0.56	+1.0
1,929,024	+		EFB2_01812	0.58	+1.7
1,929,041	+		EFB2_01812	0.60	+1.4
1,929,042	-		EFB2_01812	0.60	-1.3
1,929,065	+		EFB2_01812	0.63	-0.7
1,929,065	+		EFB2_01812	0.63	-0.3
1,929,065	+		EFB2_01812	0.63	+0.0
1,929,065	+		EFB2_01812	0.63	-0.9
1,929,089	+		EFB2_01812	0.65	-0.2
1,929,147	+		EFB2_01812	0.72	+1.1
1,929,147	+		EFB2_01812	0.72	-1.0
1,929,147	+		EFB2_01812	0.72	-1.2
1,929,147	+		EFB2_01812	0.72	-1.1
1,929,147	+		EFB2_01812	0.72	-0.2
1,929,147	+		EFB2_01812	0.72	-2.0
1,929,147	+		EFB2_01812	0.72	+1.0
1,929,148	-		EFB2_01812	0.72	+1.0
1,929,148	-		EFB2_01812	0.72	+1.5
1,929,209	+		EFB2_01812	0.79	+0.8
1,929,209	+		EFB2_01812	0.79	+1.6
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