Strain Fitness in Escherichia fergusonii Becca around EFB2_01442

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,509,664	+		EFB2_01440	0.39	+0.4
1,509,664	+		EFB2_01440	0.39	+0.3
1,509,664	+		EFB2_01440	0.39	+0.0
1,509,664	+		EFB2_01440	0.39	-0.7
1,509,664	+		EFB2_01440	0.39	+2.6
1,509,664	+		EFB2_01440	0.39	+1.1
1,509,665	-		EFB2_01440	0.39	+0.0
1,509,665	-		EFB2_01440	0.39	-0.1
1,509,789	+		EFB2_01440	0.58	-1.0
1,509,789	+		EFB2_01440	0.58	+0.4
1,509,789	+		EFB2_01440	0.58	-1.3
1,509,789	+		EFB2_01440	0.58	+1.7
1,509,789	+		EFB2_01440	0.58	+0.0
1,509,789	+		EFB2_01440	0.58	+0.4
1,509,789	+		EFB2_01440	0.58	-0.4
1,509,789	+		EFB2_01440	0.58	+0.2
1,509,789	+		EFB2_01440	0.58	+0.1
1,509,789	+		EFB2_01440	0.58	-0.5
1,509,789	+		EFB2_01440	0.58	-1.6
1,509,789	+		EFB2_01440	0.58	-1.4
1,509,789	+		EFB2_01440	0.58	+2.6
1,509,789	+		EFB2_01440	0.58	+0.6
1,509,789	+		EFB2_01440	0.58	-0.9
1,509,789	+		EFB2_01440	0.58	-1.9
1,509,789	+		EFB2_01440	0.58	-1.9
1,509,789	+		EFB2_01440	0.58	+0.3
1,509,789	+		EFB2_01440	0.58	-0.7
1,509,789	+		EFB2_01440	0.58	-0.4
1,509,789	+		EFB2_01440	0.58	+0.4
1,509,789	+		EFB2_01440	0.58	+0.8
1,509,789	+		EFB2_01440	0.58	-0.7
1,509,789	+		EFB2_01440	0.58	-2.4
1,509,789	+		EFB2_01440	0.58	-0.1
1,509,790	-		EFB2_01440	0.58	-2.0
1,509,790	-		EFB2_01440	0.58	-0.1
1,509,790	-		EFB2_01440	0.58	-0.4
1,509,790	-		EFB2_01440	0.58	+0.3
1,509,790	-		EFB2_01440	0.58	+1.9
1,509,790	-		EFB2_01440	0.58	+0.8
1,509,790	-		EFB2_01440	0.58	+1.7
1,509,790	-		EFB2_01440	0.58	-1.6
1,509,790	-		EFB2_01440	0.58	+0.4
1,509,790	-		EFB2_01440	0.58	-3.3
1,509,790	-		EFB2_01440	0.58	+0.2
1,509,790	-		EFB2_01440	0.58	+1.0
1,509,790	-		EFB2_01440	0.58	-0.4
1,509,790	-		EFB2_01440	0.58	-0.9
1,509,790	-		EFB2_01440	0.58	-1.3
1,509,790	-		EFB2_01440	0.58	-0.8
1,509,790	-		EFB2_01440	0.58	-1.0
1,509,790	-		EFB2_01440	0.58	+0.1
1,509,790	-		EFB2_01440	0.58	-1.5
1,509,809	+		EFB2_01440	0.61	+0.4
1,509,809	+		EFB2_01440	0.61	-3.0
1,509,809	+		EFB2_01440	0.61	+0.8
1,509,809	+		EFB2_01440	0.61	+0.8
1,509,809	+		EFB2_01440	0.61	+1.1
1,509,809	+		EFB2_01440	0.61	-3.1
1,509,809	+		EFB2_01440	0.61	-2.2
1,509,809	+		EFB2_01440	0.61	-2.2
1,509,809	+		EFB2_01440	0.61	-0.2
1,509,809	+		EFB2_01440	0.61	-0.4
1,509,809	+		EFB2_01440	0.61	-0.2
1,509,809	+		EFB2_01440	0.61	+0.9
1,509,809	+		EFB2_01440	0.61	+0.6
1,509,810	-		EFB2_01440	0.61	-2.6
1,509,810	-		EFB2_01440	0.61	-0.9
1,509,810	-		EFB2_01440	0.61	+0.6
1,509,810	-		EFB2_01440	0.61	+1.3
1,509,810	-		EFB2_01440	0.61	+0.7
1,509,810	-		EFB2_01440	0.61	+1.1
1,509,810	-		EFB2_01440	0.61	+1.3
1,509,810	-		EFB2_01440	0.61	+0.9
1,509,810	-		EFB2_01440	0.61	-2.3
1,509,810	-		EFB2_01440	0.61	+1.4
1,509,854	+		EFB2_01440	0.68	+0.7
1,509,855	-		EFB2_01440	0.68	-1.3
1,509,884	+		EFB2_01440	0.72	-2.9
1,509,884	+		EFB2_01440	0.72	+1.8
1,509,884	+		EFB2_01440	0.72	+0.3
1,509,885	-		EFB2_01440	0.72	+0.5
1,509,885	-		EFB2_01440	0.72	-1.5
1,509,885	-		EFB2_01440	0.72	-1.6
1,509,885	-		EFB2_01440	0.72	+0.2
1,509,885	-		EFB2_01440	0.72	-1.0
1,509,932	+		EFB2_01440	0.80	-0.9
1,509,932	+		EFB2_01440	0.80	+0.3
1,509,932	+		EFB2_01440	0.80	-0.8
1,509,932	+		EFB2_01440	0.80	-0.2
1,509,932	+		EFB2_01440	0.80	-1.8
1,509,932	+		EFB2_01440	0.80	+0.8
1,509,932	+		EFB2_01440	0.80	-0.3
1,509,932	+		EFB2_01440	0.80	+0.6
1,509,932	+		EFB2_01440	0.80	-1.3
1,509,932	+		EFB2_01440	0.80	-0.5
1,509,932	+		EFB2_01440	0.80	+0.4
1,509,932	+		EFB2_01440	0.80	+0.7
1,509,932	+		EFB2_01440	0.80	+0.4
1,509,932	+		EFB2_01440	0.80	+0.6
1,509,932	+		EFB2_01440	0.80	-1.3
1,509,932	+		EFB2_01440	0.80	+2.1
1,509,932	+		EFB2_01440	0.80	-1.4
1,509,932	+		EFB2_01440	0.80	+1.2
1,509,933	-		EFB2_01440	0.80	+0.5
1,509,933	-		EFB2_01440	0.80	+0.5
1,509,933	-		EFB2_01440	0.80	-1.3
1,509,933	-		EFB2_01440	0.80	-1.9
1,509,933	-		EFB2_01440	0.80	+0.4
1,509,933	-		EFB2_01440	0.80	+1.8
1,509,933	-		EFB2_01440	0.80	-0.6
1,509,933	-		EFB2_01440	0.80	+0.6
1,509,933	-		EFB2_01440	0.80	+0.5
1,509,933	-		EFB2_01440	0.80	+0.9
1,509,933	-		EFB2_01440	0.80	+1.6
1,509,933	-		EFB2_01440	0.80	+1.1
1,509,959	+		EFB2_01440	0.84	+0.3
1,509,959	+		EFB2_01440	0.84	+0.0
1,509,959	+		EFB2_01440	0.84	+1.0
1,509,959	+		EFB2_01440	0.84	+1.3
1,509,960	-		EFB2_01440	0.84	-0.2
1,509,960	-		EFB2_01440	0.84	-0.7
1,509,960	-		EFB2_01440	0.84	+0.3
1,509,960	-		EFB2_01440	0.84	-1.5
1,509,997	+		EFB2_01440	0.89	-0.7
1,509,997	+		EFB2_01440	0.89	+0.6
1,509,997	+		EFB2_01440	0.89	+1.1
1,509,998	-		EFB2_01440	0.90	+1.2
1,509,998	-		EFB2_01440	0.90	+0.6
1,510,018	+				+0.3
1,510,019	-				+0.9
1,510,128	+				+0.5
1,510,128	+				-1.3
1,510,129	-		EFB2_01441	0.10	-0.1
1,510,159	+		EFB2_01441	0.16	-1.7
1,510,160	-		EFB2_01441	0.16	+1.3
1,510,160	-		EFB2_01441	0.16	+0.3
1,510,297	+		EFB2_01441	0.44	-0.4
1,510,349	-		EFB2_01441	0.54	-2.9
1,510,372	-		EFB2_01441	0.58	+1.5
1,510,372	-		EFB2_01441	0.58	-1.0
1,510,393	+		EFB2_01441	0.63	-1.3
1,510,393	+		EFB2_01441	0.63	+0.5
1,510,394	-		EFB2_01441	0.63	+0.6
1,510,440	+		EFB2_01441	0.72	-1.0
1,510,440	+		EFB2_01441	0.72	+2.4
1,510,440	+		EFB2_01441	0.72	-1.7
1,510,440	+		EFB2_01441	0.72	+1.7
1,510,440	+		EFB2_01441	0.72	-1.4
1,510,440	+		EFB2_01441	0.72	-0.1
1,510,440	+		EFB2_01441	0.72	-1.0
1,510,440	+		EFB2_01441	0.72	+1.0
1,510,440	+		EFB2_01441	0.72	+1.2
1,510,440	+		EFB2_01441	0.72	-1.0
1,510,440	+		EFB2_01441	0.72	+0.0
1,510,440	+		EFB2_01441	0.72	-2.9
1,510,440	+		EFB2_01441	0.72	-0.1
1,510,441	-		EFB2_01441	0.72	+1.1
1,510,441	-		EFB2_01441	0.72	-1.2
1,510,441	-		EFB2_01441	0.72	+0.0
1,510,441	-		EFB2_01441	0.72	+1.4
1,510,441	-		EFB2_01441	0.72	+1.2
1,510,441	-		EFB2_01441	0.72	+0.5
1,510,441	-		EFB2_01441	0.72	+0.6
1,510,441	-		EFB2_01441	0.72	+0.8
1,510,441	-		EFB2_01441	0.72	-2.2
1,510,441	-		EFB2_01441	0.72	+0.6
1,510,539	+				-0.1
1,510,539	+				-0.0
1,510,539	+				+2.0
1,510,539	+				-1.4
1,510,540	-				+0.4
1,510,540	-				-1.1
1,510,540	-				+0.4
1,510,543	+				-3.4
1,510,544	-				-0.2
1,510,544	-				-1.0
1,510,544	-				-0.9
1,510,544	-				-0.4
1,510,544	-				+1.4
1,510,552	+				+0.3
1,510,553	-				+0.1
1,510,603	+				-3.1
1,510,603	+				-2.6
1,510,603	+				-0.6
1,510,604	-				-0.4
1,510,604	-				-1.6
1,510,604	-				-0.7
1,510,604	-				-2.7
1,510,604	-				+0.3
1,510,618	+				-1.8
1,510,618	+				-2.7
1,510,618	+				-0.2
1,510,618	+				+0.8
1,510,619	-				+0.4
1,510,619	-				-0.2
1,510,619	-				-0.3
1,510,619	-				-1.1
1,510,619	-				+1.1
1,510,619	-				-0.4
1,510,639	+				-0.6
1,510,639	+				+1.6
1,510,639	+				-0.5
1,510,640	-				-1.4
1,510,640	-				+0.9
1,510,640	-				+0.5
1,510,640	-				+1.8
1,510,640	-				+0.9
1,510,640	-				-0.7
1,510,640	-				+1.4
1,510,661	+				-2.0
1,510,661	+				-0.9
1,510,661	+				-1.5
1,510,661	+				-1.4
1,510,661	+				-0.3
1,510,662	-				+1.0
1,510,662	-				-2.6
1,510,662	-				-1.2
1,510,714	+				-0.4
1,510,745	+		EFB2_01442	0.11	-0.7
1,510,745	+		EFB2_01442	0.11	+0.8
1,510,745	+		EFB2_01442	0.11	+0.6
1,510,745	+		EFB2_01442	0.11	-1.8
1,510,745	+		EFB2_01442	0.11	+0.4
1,510,745	+		EFB2_01442	0.11	+0.8
1,510,745	+		EFB2_01442	0.11	+0.9
1,510,745	+		EFB2_01442	0.11	-0.3
1,510,745	+		EFB2_01442	0.11	+0.9
1,510,745	+		EFB2_01442	0.11	-0.8
1,510,745	+		EFB2_01442	0.11	+0.8
1,510,746	-		EFB2_01442	0.11	-0.8
1,510,746	-		EFB2_01442	0.11	+1.3
1,510,746	-		EFB2_01442	0.11	+1.3
1,510,746	-		EFB2_01442	0.11	-0.5
1,510,746	-		EFB2_01442	0.11	-0.2
1,510,746	-		EFB2_01442	0.11	-0.4
1,510,765	+		EFB2_01442	0.13	-0.8
1,510,784	+		EFB2_01442	0.15	-0.9
1,510,784	+		EFB2_01442	0.15	-1.2
1,510,784	+		EFB2_01442	0.15	-1.5
1,510,785	-		EFB2_01442	0.15	+2.1
1,510,785	-		EFB2_01442	0.15	+1.0
1,510,843	+		EFB2_01442	0.21	+0.5
1,510,843	+		EFB2_01442	0.21	-1.4
1,510,843	+		EFB2_01442	0.21	+0.6
1,510,862	+		EFB2_01442	0.23	+1.1
1,510,862	+		EFB2_01442	0.23	-1.8
1,510,862	+		EFB2_01442	0.23	+0.9
1,510,862	+		EFB2_01442	0.23	-2.4
1,510,862	+		EFB2_01442	0.23	+1.1
1,510,862	+		EFB2_01442	0.23	-1.2
1,510,863	-		EFB2_01442	0.23	-0.3
1,510,863	-		EFB2_01442	0.23	+1.0
1,510,863	-		EFB2_01442	0.23	+0.6
1,510,863	-		EFB2_01442	0.23	-1.6
1,511,016	+		EFB2_01442	0.37	+1.5
1,511,016	+		EFB2_01442	0.37	+2.0
1,511,016	+		EFB2_01442	0.37	+0.5
1,511,016	+		EFB2_01442	0.37	+0.6
1,511,016	+		EFB2_01442	0.37	+0.1
1,511,016	+		EFB2_01442	0.37	+1.3
1,511,016	+		EFB2_01442	0.37	+0.6
1,511,017	-		EFB2_01442	0.37	+0.3
1,511,017	-		EFB2_01442	0.37	+1.5
1,511,017	-		EFB2_01442	0.37	-1.2
1,511,017	-		EFB2_01442	0.37	+1.7
1,511,017	-		EFB2_01442	0.37	+0.2
1,511,017	-		EFB2_01442	0.37	-0.3
1,511,017	-		EFB2_01442	0.37	+0.9
1,511,017	-		EFB2_01442	0.37	+2.0
1,511,017	-		EFB2_01442	0.37	+1.1
1,511,017	-		EFB2_01442	0.37	+1.5
1,511,020	+		EFB2_01442	0.38	+0.7
1,511,020	+		EFB2_01442	0.38	-3.5
1,511,020	+		EFB2_01442	0.38	-0.3
1,511,020	+		EFB2_01442	0.38	+0.6
1,511,020	+		EFB2_01442	0.38	-2.2
1,511,021	-		EFB2_01442	0.38	-1.9
1,511,021	-		EFB2_01442	0.38	-0.1
1,511,033	+		EFB2_01442	0.39	+1.4
1,511,033	+		EFB2_01442	0.39	-1.9
1,511,033	+		EFB2_01442	0.39	+1.5
1,511,034	-		EFB2_01442	0.39	+2.1
1,511,049	+		EFB2_01442	0.40	+2.7
1,511,049	+		EFB2_01442	0.40	-2.0
1,511,049	+		EFB2_01442	0.40	-0.2
1,511,049	+		EFB2_01442	0.40	-1.1
1,511,049	+		EFB2_01442	0.40	+0.6
1,511,050	-		EFB2_01442	0.40	-0.2
1,511,095	+		EFB2_01442	0.45	+1.5
1,511,109	+		EFB2_01442	0.46	+0.6
1,511,112	+		EFB2_01442	0.46	-0.1
1,511,112	+		EFB2_01442	0.46	-0.2
1,511,112	+		EFB2_01442	0.46	-0.7
1,511,112	+		EFB2_01442	0.46	+0.4
1,511,112	+		EFB2_01442	0.46	-1.9
1,511,112	+		EFB2_01442	0.46	+1.6
1,511,112	+		EFB2_01442	0.46	-2.2
1,511,112	+		EFB2_01442	0.46	+2.0
1,511,112	+		EFB2_01442	0.46	-0.4
1,511,112	+		EFB2_01442	0.46	-2.0
1,511,112	+		EFB2_01442	0.46	-2.4
1,511,112	+		EFB2_01442	0.46	-1.6
1,511,112	+		EFB2_01442	0.46	-0.1
1,511,112	+		EFB2_01442	0.46	-1.6
1,511,112	+		EFB2_01442	0.46	+0.8
1,511,112	+		EFB2_01442	0.46	+0.9
1,511,112	+		EFB2_01442	0.46	-0.5
1,511,112	+		EFB2_01442	0.46	+1.0
1,511,112	+		EFB2_01442	0.46	+0.0
1,511,112	+		EFB2_01442	0.46	-1.3
1,511,112	+		EFB2_01442	0.46	-0.4
1,511,112	+		EFB2_01442	0.46	+0.3
1,511,112	+		EFB2_01442	0.46	+0.8
1,511,112	+		EFB2_01442	0.46	+2.1
1,511,112	+		EFB2_01442	0.46	-2.1
1,511,112	+		EFB2_01442	0.46	-0.4
1,511,112	+		EFB2_01442	0.46	-0.4
1,511,112	+		EFB2_01442	0.46	+0.7
1,511,112	+		EFB2_01442	0.46	+1.0
1,511,112	+		EFB2_01442	0.46	+0.6
1,511,112	+		EFB2_01442	0.46	+0.6
1,511,112	+		EFB2_01442	0.46	+0.8
1,511,112	+		EFB2_01442	0.46	+0.7
1,511,112	+		EFB2_01442	0.46	+1.0
1,511,112	+		EFB2_01442	0.46	+0.1
1,511,112	+		EFB2_01442	0.46	-0.2
1,511,112	+		EFB2_01442	0.46	-1.7
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1,512,075	-		EFB2_01443	0.43	+1.9
1,512,075	-		EFB2_01443	0.43	-0.0
1,512,075	-		EFB2_01443	0.43	+0.8
1,512,075	-		EFB2_01443	0.43	+0.6
1,512,075	-		EFB2_01443	0.43	-0.1
1,512,179	+		EFB2_01443	0.55	+1.4
1,512,179	+		EFB2_01443	0.55	+0.7
1,512,180	-		EFB2_01443	0.55	-1.8
1,512,180	-		EFB2_01443	0.55	+0.0
1,512,191	-		EFB2_01443	0.56	+0.7
1,512,191	-		EFB2_01443	0.56	-0.9
1,512,281	+		EFB2_01443	0.66	+0.6
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1,512,281	+		EFB2_01443	0.66	-2.2
1,512,281	+		EFB2_01443	0.66	-0.7
1,512,281	+		EFB2_01443	0.66	-0.5
1,512,281	+		EFB2_01443	0.66	-0.6
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1,512,282	-		EFB2_01443	0.66	-1.6
1,512,282	-		EFB2_01443	0.66	+0.1
1,512,282	-		EFB2_01443	0.66	+0.7
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1,512,282	-		EFB2_01443	0.66	-1.1
1,512,282	-		EFB2_01443	0.66	-0.3
1,512,282	-		EFB2_01443	0.66	+2.2
1,512,282	-		EFB2_01443	0.66	+0.6
1,512,289	-		EFB2_01443	0.67	+0.9
1,512,301	+		EFB2_01443	0.68	-1.2
1,512,301	+		EFB2_01443	0.68	+1.1
1,512,448	-		EFB2_01443	0.85	+0.1
1,512,480	+		EFB2_01443	0.88	-0.9
1,512,480	+		EFB2_01443	0.88	-0.4
1,512,480	+		EFB2_01443	0.88	+0.8
1,512,480	+		EFB2_01443	0.88	+1.4
1,512,480	+		EFB2_01443	0.88	-1.2
1,512,480	+		EFB2_01443	0.88	-0.1
1,512,481	-		EFB2_01443	0.88	+0.6
1,512,481	-		EFB2_01443	0.88	+1.9
1,512,481	-		EFB2_01443	0.88	-0.3
1,512,481	-		EFB2_01443	0.88	-0.7
1,512,481	-		EFB2_01443	0.88	-0.6
1,512,481	-		EFB2_01443	0.88	+2.0
1,512,559	-				+0.1
1,512,559	-				+0.7
1,512,559	-				+0.3
1,512,587	+				+0.1
1,512,587	+				-0.7
1,512,587	+				+0.5
1,512,588	-				+0.7
1,512,588	-				+1.1
1,512,588	-				+0.6
1,512,588	-				+1.8
1,512,588	-				+2.9
1,512,632	+				-0.4
1,512,632	+				+0.3
1,512,633	-				-1.0