Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05483

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05482 and BACOVA_05483 are separated by 4 nucleotidesBACOVA_05483 and BACOVA_05484 are separated by 1 nucleotidesBACOVA_05484 and BACOVA_05485 overlap by 7 nucleotides BACOVA_05482: BACOVA_05482 - cation transport protein, at 984,307 to 986,163 _05482 BACOVA_05483: BACOVA_05483 - TrkA N-terminal domain protein, at 986,168 to 986,854 _05483 BACOVA_05484: BACOVA_05484 - bacterial capsule synthesis protein, at 986,856 to 987,782 _05484 BACOVA_05485: BACOVA_05485 - hypothetical protein, at 987,776 to 990,238 _05485 Position (kb) 986 987Strain fitness (log2 ratio) -2 -1 0 1 2at 985.200 kb on + strand, within BACOVA_05482at 985.200 kb on + strand, within BACOVA_05482at 985.201 kb on - strand, within BACOVA_05482at 985.203 kb on + strand, within BACOVA_05482at 985.294 kb on - strand, within BACOVA_05482at 985.332 kb on + strand, within BACOVA_05482at 985.373 kb on + strand, within BACOVA_05482at 985.374 kb on - strand, within BACOVA_05482at 985.421 kb on + strand, within BACOVA_05482at 985.422 kb on - strand, within BACOVA_05482at 985.422 kb on - strand, within BACOVA_05482at 985.426 kb on + strand, within BACOVA_05482at 985.426 kb on + strand, within BACOVA_05482at 985.427 kb on - strand, within BACOVA_05482at 985.520 kb on + strand, within BACOVA_05482at 985.520 kb on + strand, within BACOVA_05482at 985.544 kb on + strand, within BACOVA_05482at 985.556 kb on + strand, within BACOVA_05482at 985.557 kb on - strand, within BACOVA_05482at 985.557 kb on - strand, within BACOVA_05482at 985.557 kb on - strand, within BACOVA_05482at 985.560 kb on + strand, within BACOVA_05482at 985.560 kb on + strand, within BACOVA_05482at 985.597 kb on - strand, within BACOVA_05482at 985.701 kb on - strand, within BACOVA_05482at 985.784 kb on + strand, within BACOVA_05482at 985.800 kb on - strand, within BACOVA_05482at 985.805 kb on + strand, within BACOVA_05482at 985.806 kb on - strand, within BACOVA_05482at 985.806 kb on - strand, within BACOVA_05482at 985.931 kb on + strand, within BACOVA_05482at 985.987 kb on - strandat 986.043 kb on - strandat 986.065 kb on - strandat 986.084 kb on + strandat 986.084 kb on + strandat 986.085 kb on - strandat 986.096 kb on + strandat 986.096 kb on + strandat 986.097 kb on - strandat 986.128 kb on + strandat 986.145 kb on + strandat 986.145 kb on + strandat 986.156 kb on + strandat 986.161 kb on + strandat 986.162 kb on - strandat 986.162 kb on - strandat 986.168 kb on - strandat 986.175 kb on - strandat 986.176 kb on + strandat 986.179 kb on + strandat 986.180 kb on - strandat 986.198 kb on + strandat 986.246 kb on - strand, within BACOVA_05483at 986.246 kb on - strand, within BACOVA_05483at 986.246 kb on - strand, within BACOVA_05483at 986.246 kb on - strand, within BACOVA_05483at 986.260 kb on - strand, within BACOVA_05483at 986.274 kb on + strand, within BACOVA_05483at 986.290 kb on + strand, within BACOVA_05483at 986.300 kb on - strand, within BACOVA_05483at 986.338 kb on - strand, within BACOVA_05483at 986.357 kb on - strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.368 kb on - strand, within BACOVA_05483at 986.371 kb on + strand, within BACOVA_05483at 986.476 kb on + strand, within BACOVA_05483at 986.548 kb on - strand, within BACOVA_05483at 986.569 kb on + strand, within BACOVA_05483at 986.601 kb on - strand, within BACOVA_05483at 986.603 kb on + strand, within BACOVA_05483at 986.604 kb on - strand, within BACOVA_05483at 986.604 kb on - strand, within BACOVA_05483at 986.604 kb on - strand, within BACOVA_05483at 986.692 kb on - strand, within BACOVA_05483at 986.731 kb on + strand, within BACOVA_05483at 986.732 kb on - strand, within BACOVA_05483at 986.925 kb on - strandat 986.979 kb on + strand, within BACOVA_05484at 986.997 kb on - strand, within BACOVA_05484at 986.999 kb on - strand, within BACOVA_05484at 987.011 kb on + strand, within BACOVA_05484at 987.062 kb on + strand, within BACOVA_05484at 987.063 kb on - strand, within BACOVA_05484at 987.113 kb on + strand, within BACOVA_05484at 987.114 kb on - strand, within BACOVA_05484at 987.117 kb on - strand, within BACOVA_05484at 987.194 kb on + strand, within BACOVA_05484at 987.208 kb on - strand, within BACOVA_05484at 987.253 kb on + strand, within BACOVA_05484at 987.254 kb on - strand, within BACOVA_05484at 987.256 kb on - strand, within BACOVA_05484at 987.279 kb on - strand, within BACOVA_05484at 987.279 kb on - strand, within BACOVA_05484at 987.284 kb on - strand, within BACOVA_05484at 987.298 kb on - strand, within BACOVA_05484at 987.351 kb on - strand, within BACOVA_05484at 987.353 kb on + strand, within BACOVA_05484at 987.353 kb on + strand, within BACOVA_05484at 987.353 kb on + strand, within BACOVA_05484at 987.353 kb on + strand, within BACOVA_05484at 987.354 kb on - strand, within BACOVA_05484at 987.397 kb on + strand, within BACOVA_05484at 987.398 kb on - strand, within BACOVA_05484at 987.398 kb on - strand, within BACOVA_05484at 987.431 kb on + strand, within BACOVA_05484at 987.432 kb on - strand, within BACOVA_05484at 987.434 kb on + strand, within BACOVA_05484at 987.434 kb on + strand, within BACOVA_05484at 987.525 kb on + strand, within BACOVA_05484at 987.601 kb on - strand, within BACOVA_05484at 987.601 kb on - strand, within BACOVA_05484at 987.613 kb on - strand, within BACOVA_05484at 987.722 kb on + strandat 987.738 kb on + strandat 987.738 kb on + strandat 987.739 kb on - strandat 987.740 kb on + strandat 987.740 kb on + strandat 987.743 kb on + strandat 987.743 kb on + strandat 987.744 kb on - strandat 987.775 kb on - strandat 987.778 kb on - strandat 987.778 kb on - strandat 987.778 kb on - strandat 987.809 kb on + strandat 987.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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985,200 + BACOVA_05482 0.48 -1.5
985,200 + BACOVA_05482 0.48 +1.3
985,201 - BACOVA_05482 0.48 -0.9
985,203 + BACOVA_05482 0.48 -0.2
985,294 - BACOVA_05482 0.53 -0.4
985,332 + BACOVA_05482 0.55 -0.8
985,373 + BACOVA_05482 0.57 -2.0
985,374 - BACOVA_05482 0.57 -0.2
985,421 + BACOVA_05482 0.60 +0.7
985,422 - BACOVA_05482 0.60 +1.5
985,422 - BACOVA_05482 0.60 +0.2
985,426 + BACOVA_05482 0.60 +0.1
985,426 + BACOVA_05482 0.60 +0.4
985,427 - BACOVA_05482 0.60 -0.0
985,520 + BACOVA_05482 0.65 -0.1
985,520 + BACOVA_05482 0.65 +0.6
985,544 + BACOVA_05482 0.67 -0.2
985,556 + BACOVA_05482 0.67 +0.1
985,557 - BACOVA_05482 0.67 +0.5
985,557 - BACOVA_05482 0.67 -0.3
985,557 - BACOVA_05482 0.67 -1.0
985,560 + BACOVA_05482 0.67 -0.8
985,560 + BACOVA_05482 0.67 -0.7
985,597 - BACOVA_05482 0.69 +0.1
985,701 - BACOVA_05482 0.75 +0.2
985,784 + BACOVA_05482 0.80 -0.5
985,800 - BACOVA_05482 0.80 +0.5
985,805 + BACOVA_05482 0.81 +1.2
985,806 - BACOVA_05482 0.81 +1.0
985,806 - BACOVA_05482 0.81 +1.8
985,931 + BACOVA_05482 0.87 -0.1
985,987 - -1.8
986,043 - +0.3
986,065 - -0.3
986,084 + +0.0
986,084 + -1.0
986,085 - +1.0
986,096 + +1.3
986,096 + -1.0
986,097 - +0.9
986,128 + -1.2
986,145 + +1.6
986,145 + +1.6
986,156 + -0.6
986,161 + +0.1
986,162 - -1.9
986,162 - +0.0
986,168 - +0.1
986,175 - +0.5
986,176 + +1.0
986,179 + +0.7
986,180 - +0.1
986,198 + +0.8
986,246 - BACOVA_05483 0.11 -0.3
986,246 - BACOVA_05483 0.11 +0.9
986,246 - BACOVA_05483 0.11 +0.2
986,246 - BACOVA_05483 0.11 -1.0
986,260 - BACOVA_05483 0.13 -0.8
986,274 + BACOVA_05483 0.15 -0.3
986,290 + BACOVA_05483 0.18 +0.1
986,300 - BACOVA_05483 0.19 +2.0
986,338 - BACOVA_05483 0.25 +0.2
986,357 - BACOVA_05483 0.28 -0.2
986,367 + BACOVA_05483 0.29 -0.7
986,367 + BACOVA_05483 0.29 -0.3
986,367 + BACOVA_05483 0.29 +0.5
986,367 + BACOVA_05483 0.29 -1.7
986,368 - BACOVA_05483 0.29 +1.5
986,371 + BACOVA_05483 0.30 -1.0
986,476 + BACOVA_05483 0.45 -0.9
986,548 - BACOVA_05483 0.55 +0.3
986,569 + BACOVA_05483 0.58 +0.2
986,601 - BACOVA_05483 0.63 -1.6
986,603 + BACOVA_05483 0.63 -0.3
986,604 - BACOVA_05483 0.63 -1.1
986,604 - BACOVA_05483 0.63 -0.2
986,604 - BACOVA_05483 0.63 +0.5
986,692 - BACOVA_05483 0.76 -2.2
986,731 + BACOVA_05483 0.82 -0.3
986,732 - BACOVA_05483 0.82 +1.3
986,925 - -2.0
986,979 + BACOVA_05484 0.13 -0.6
986,997 - BACOVA_05484 0.15 +0.6
986,999 - BACOVA_05484 0.15 +1.1
987,011 + BACOVA_05484 0.17 -0.4
987,062 + BACOVA_05484 0.22 +0.8
987,063 - BACOVA_05484 0.22 +1.1
987,113 + BACOVA_05484 0.28 -0.5
987,114 - BACOVA_05484 0.28 -0.0
987,117 - BACOVA_05484 0.28 -1.3
987,194 + BACOVA_05484 0.36 +0.7
987,208 - BACOVA_05484 0.38 -1.6
987,253 + BACOVA_05484 0.43 -0.8
987,254 - BACOVA_05484 0.43 -1.3
987,256 - BACOVA_05484 0.43 -0.8
987,279 - BACOVA_05484 0.46 -1.2
987,279 - BACOVA_05484 0.46 -0.5
987,284 - BACOVA_05484 0.46 +1.3
987,298 - BACOVA_05484 0.48 +0.2
987,351 - BACOVA_05484 0.53 -0.0
987,353 + BACOVA_05484 0.54 -0.2
987,353 + BACOVA_05484 0.54 -0.9
987,353 + BACOVA_05484 0.54 +0.2
987,353 + BACOVA_05484 0.54 -0.5
987,354 - BACOVA_05484 0.54 +0.1
987,397 + BACOVA_05484 0.58 -0.4
987,398 - BACOVA_05484 0.58 +1.2
987,398 - BACOVA_05484 0.58 +0.8
987,431 + BACOVA_05484 0.62 +1.3
987,432 - BACOVA_05484 0.62 +0.3
987,434 + BACOVA_05484 0.62 +1.1
987,434 + BACOVA_05484 0.62 +0.2
987,525 + BACOVA_05484 0.72 +0.5
987,601 - BACOVA_05484 0.80 +1.3
987,601 - BACOVA_05484 0.80 +0.6
987,613 - BACOVA_05484 0.82 -2.5
987,722 + -0.4
987,738 + -0.0
987,738 + +0.5
987,739 - -0.6
987,740 + +0.2
987,740 + +1.3
987,743 + +0.1
987,743 + -0.4
987,744 - -0.1
987,775 - +1.2
987,778 - -0.7
987,778 - -0.0
987,778 - +2.1
987,809 + +0.1
987,810 - +1.5

Or see this region's nucleotide sequence