Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05170

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05168 and BACOVA_05169 are separated by 12 nucleotidesBACOVA_05169 and BACOVA_05170 overlap by 97 nucleotidesBACOVA_05170 and BACOVA_05171 are separated by 140 nucleotidesBACOVA_05171 and BACOVA_05172 are separated by 65 nucleotides BACOVA_05168: BACOVA_05168 - MazG family protein, at 654,460 to 655,248 _05168 BACOVA_05169: BACOVA_05169 - hypothetical protein, at 655,261 to 656,244 _05169 BACOVA_05170: BACOVA_05170 - hypothetical protein, at 656,148 to 656,315 _05170 BACOVA_05171: BACOVA_05171 - hypothetical protein, at 656,456 to 657,094 _05171 BACOVA_05172: BACOVA_05172 - valine--tRNA ligase, at 657,160 to 659,796 _05172 Position (kb) 656 657Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 655.248 kb on + strandat 655.248 kb on + strandat 655.249 kb on - strandat 655.249 kb on - strandat 655.291 kb on + strandat 655.303 kb on + strandat 655.304 kb on - strandat 655.307 kb on - strandat 655.336 kb on + strandat 655.336 kb on + strandat 655.364 kb on + strand, within BACOVA_05169at 655.366 kb on + strand, within BACOVA_05169at 655.401 kb on - strand, within BACOVA_05169at 655.401 kb on - strand, within BACOVA_05169at 655.416 kb on - strand, within BACOVA_05169at 655.416 kb on - strand, within BACOVA_05169at 655.478 kb on + strand, within BACOVA_05169at 655.538 kb on + strand, within BACOVA_05169at 655.621 kb on - strand, within BACOVA_05169at 655.624 kb on + strand, within BACOVA_05169at 655.625 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.662 kb on - strand, within BACOVA_05169at 655.732 kb on + strand, within BACOVA_05169at 655.810 kb on - strand, within BACOVA_05169at 655.849 kb on + strand, within BACOVA_05169at 655.894 kb on + strand, within BACOVA_05169at 655.895 kb on - strand, within BACOVA_05169at 655.905 kb on + strand, within BACOVA_05169at 655.906 kb on - strand, within BACOVA_05169at 655.908 kb on - strand, within BACOVA_05169at 655.944 kb on - strand, within BACOVA_05169at 655.950 kb on + strand, within BACOVA_05169at 655.951 kb on + strand, within BACOVA_05169at 655.991 kb on + strand, within BACOVA_05169at 656.012 kb on + strand, within BACOVA_05169at 656.020 kb on + strand, within BACOVA_05169at 656.021 kb on - strand, within BACOVA_05169at 656.024 kb on + strand, within BACOVA_05169at 656.024 kb on + strand, within BACOVA_05169at 656.082 kb on + strand, within BACOVA_05169at 656.097 kb on - strand, within BACOVA_05169at 656.097 kb on - strand, within BACOVA_05169at 656.109 kb on + strand, within BACOVA_05169at 656.127 kb on + strand, within BACOVA_05169at 656.127 kb on + strand, within BACOVA_05169at 656.128 kb on - strand, within BACOVA_05169at 656.128 kb on - strand, within BACOVA_05169at 656.137 kb on - strand, within BACOVA_05169at 656.137 kb on - strand, within BACOVA_05169at 656.140 kb on + strand, within BACOVA_05169at 656.141 kb on - strand, within BACOVA_05169at 656.141 kb on - strand, within BACOVA_05169at 656.164 kb on + strandat 656.204 kb on - strandat 656.219 kb on - strandat 656.284 kb on - strand, within BACOVA_05170at 656.340 kb on + strandat 656.379 kb on - strandat 656.379 kb on - strandat 656.411 kb on - strandat 656.418 kb on - strandat 656.419 kb on + strandat 656.420 kb on - strandat 656.461 kb on + strandat 656.521 kb on + strand, within BACOVA_05171at 656.542 kb on + strand, within BACOVA_05171at 656.543 kb on - strand, within BACOVA_05171at 656.697 kb on - strand, within BACOVA_05171at 656.713 kb on + strand, within BACOVA_05171at 656.742 kb on + strand, within BACOVA_05171at 656.743 kb on - strand, within BACOVA_05171at 656.773 kb on + strand, within BACOVA_05171at 656.830 kb on - strand, within BACOVA_05171at 656.849 kb on - strand, within BACOVA_05171at 656.862 kb on + strand, within BACOVA_05171at 656.867 kb on + strand, within BACOVA_05171at 656.872 kb on + strand, within BACOVA_05171at 656.872 kb on + strand, within BACOVA_05171at 656.873 kb on - strand, within BACOVA_05171at 656.912 kb on - strand, within BACOVA_05171at 656.958 kb on + strand, within BACOVA_05171at 656.958 kb on + strand, within BACOVA_05171at 656.958 kb on + strand, within BACOVA_05171at 656.973 kb on + strand, within BACOVA_05171at 657.047 kb on - strandat 657.047 kb on - strandat 657.126 kb on + strandat 657.133 kb on + strandat 657.133 kb on + strandat 657.133 kb on + strandat 657.143 kb on + strandat 657.143 kb on + strandat 657.143 kb on + strandat 657.143 kb on + strandat 657.145 kb on + strandat 657.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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655,248 + -0.8
655,248 + +0.7
655,249 - -1.0
655,249 - +0.6
655,291 + -1.7
655,303 + +0.9
655,304 - +3.2
655,307 - -0.7
655,336 + -0.3
655,336 + +0.2
655,364 + BACOVA_05169 0.10 -1.1
655,366 + BACOVA_05169 0.11 +0.4
655,401 - BACOVA_05169 0.14 +0.1
655,401 - BACOVA_05169 0.14 +0.7
655,416 - BACOVA_05169 0.16 -0.5
655,416 - BACOVA_05169 0.16 -1.5
655,478 + BACOVA_05169 0.22 -0.9
655,538 + BACOVA_05169 0.28 +0.1
655,621 - BACOVA_05169 0.37 +1.1
655,624 + BACOVA_05169 0.37 +0.9
655,625 - BACOVA_05169 0.37 +3.1
655,650 - BACOVA_05169 0.40 +0.4
655,650 - BACOVA_05169 0.40 -0.9
655,650 - BACOVA_05169 0.40 +0.5
655,662 - BACOVA_05169 0.41 -1.0
655,732 + BACOVA_05169 0.48 -1.3
655,810 - BACOVA_05169 0.56 +1.7
655,849 + BACOVA_05169 0.60 -0.3
655,894 + BACOVA_05169 0.64 +2.9
655,895 - BACOVA_05169 0.64 -0.2
655,905 + BACOVA_05169 0.65 +0.6
655,906 - BACOVA_05169 0.66 +0.3
655,908 - BACOVA_05169 0.66 +0.6
655,944 - BACOVA_05169 0.69 -0.2
655,950 + BACOVA_05169 0.70 -1.7
655,951 + BACOVA_05169 0.70 -0.8
655,991 + BACOVA_05169 0.74 -0.9
656,012 + BACOVA_05169 0.76 +1.1
656,020 + BACOVA_05169 0.77 +0.5
656,021 - BACOVA_05169 0.77 -2.1
656,024 + BACOVA_05169 0.78 -1.2
656,024 + BACOVA_05169 0.78 +1.3
656,082 + BACOVA_05169 0.83 -0.5
656,097 - BACOVA_05169 0.85 -1.5
656,097 - BACOVA_05169 0.85 -1.3
656,109 + BACOVA_05169 0.86 -0.2
656,127 + BACOVA_05169 0.88 -1.3
656,127 + BACOVA_05169 0.88 +0.7
656,128 - BACOVA_05169 0.88 -0.4
656,128 - BACOVA_05169 0.88 +0.3
656,137 - BACOVA_05169 0.89 -1.1
656,137 - BACOVA_05169 0.89 -1.1
656,140 + BACOVA_05169 0.89 -1.7
656,141 - BACOVA_05169 0.89 -0.4
656,141 - BACOVA_05169 0.89 +0.6
656,164 + -0.4
656,204 - -0.6
656,219 - +0.9
656,284 - BACOVA_05170 0.81 +0.3
656,340 + +0.1
656,379 - -0.4
656,379 - -0.6
656,411 - -1.1
656,418 - -0.5
656,419 + -0.6
656,420 - +1.1
656,461 + -0.2
656,521 + BACOVA_05171 0.10 -0.4
656,542 + BACOVA_05171 0.13 -0.2
656,543 - BACOVA_05171 0.14 +0.3
656,697 - BACOVA_05171 0.38 -0.9
656,713 + BACOVA_05171 0.40 -1.7
656,742 + BACOVA_05171 0.45 -2.5
656,743 - BACOVA_05171 0.45 +0.1
656,773 + BACOVA_05171 0.50 +0.6
656,830 - BACOVA_05171 0.59 -1.5
656,849 - BACOVA_05171 0.62 -1.3
656,862 + BACOVA_05171 0.64 +0.0
656,867 + BACOVA_05171 0.64 +0.9
656,872 + BACOVA_05171 0.65 +0.1
656,872 + BACOVA_05171 0.65 -0.1
656,873 - BACOVA_05171 0.65 +8.1
656,912 - BACOVA_05171 0.71 -0.1
656,958 + BACOVA_05171 0.79 +1.3
656,958 + BACOVA_05171 0.79 +0.0
656,958 + BACOVA_05171 0.79 -1.9
656,973 + BACOVA_05171 0.81 -0.7
657,047 - +1.1
657,047 - +0.6
657,126 + -2.0
657,133 + +1.3
657,133 + -0.8
657,133 + -0.1
657,143 + -2.2
657,143 + -0.6
657,143 + +1.5
657,143 + -0.3
657,145 + -0.6
657,145 + -0.2

Or see this region's nucleotide sequence