Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05132

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05130 and BACOVA_05131 are separated by 8 nucleotidesBACOVA_05131 and BACOVA_05132 are separated by 13 nucleotidesBACOVA_05132 and BACOVA_05133 are separated by 232 nucleotidesBACOVA_05133 and BACOVA_05134 overlap by 13 nucleotides BACOVA_05130: BACOVA_05130 - RNA methyltransferase, RsmE family, at 605,750 to 606,448 _05130 BACOVA_05131: BACOVA_05131 - hypothetical protein, at 606,457 to 607,050 _05131 BACOVA_05132: BACOVA_05132 - nucleoside transporter, at 607,064 to 608,314 _05132 BACOVA_05133: BACOVA_05133 - hypothetical protein, at 608,547 to 608,735 _05133 BACOVA_05134: BACOVA_05134 - hypothetical protein, at 608,723 to 609,901 _05134 Position (kb) 607 608 609Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 606.109 kb on + strand, within BACOVA_05130at 606.315 kb on + strand, within BACOVA_05130at 606.338 kb on - strand, within BACOVA_05130at 606.358 kb on + strand, within BACOVA_05130at 606.359 kb on - strand, within BACOVA_05130at 606.363 kb on - strand, within BACOVA_05130at 606.422 kb on + strandat 606.425 kb on - strandat 606.436 kb on - strandat 606.436 kb on - strandat 606.440 kb on + strandat 606.449 kb on - strandat 606.459 kb on - strandat 606.469 kb on - strandat 606.525 kb on + strand, within BACOVA_05131at 606.526 kb on - strand, within BACOVA_05131at 606.529 kb on - strand, within BACOVA_05131at 606.681 kb on + strand, within BACOVA_05131at 606.681 kb on + strand, within BACOVA_05131at 606.748 kb on - strand, within BACOVA_05131at 606.771 kb on - strand, within BACOVA_05131at 606.776 kb on + strand, within BACOVA_05131at 606.820 kb on + strand, within BACOVA_05131at 606.841 kb on - strand, within BACOVA_05131at 606.853 kb on + strand, within BACOVA_05131at 606.902 kb on + strand, within BACOVA_05131at 606.943 kb on - strand, within BACOVA_05131at 606.977 kb on - strand, within BACOVA_05131at 606.981 kb on + strand, within BACOVA_05131at 607.021 kb on + strandat 607.031 kb on - strandat 607.031 kb on - strandat 607.095 kb on + strandat 607.104 kb on - strandat 607.137 kb on + strandat 607.138 kb on - strandat 607.200 kb on - strand, within BACOVA_05132at 607.200 kb on - strand, within BACOVA_05132at 607.233 kb on + strand, within BACOVA_05132at 607.234 kb on - strand, within BACOVA_05132at 607.261 kb on + strand, within BACOVA_05132at 607.270 kb on + strand, within BACOVA_05132at 607.271 kb on - strand, within BACOVA_05132at 607.271 kb on - strand, within BACOVA_05132at 607.334 kb on - strand, within BACOVA_05132at 607.397 kb on + strand, within BACOVA_05132at 607.398 kb on - strand, within BACOVA_05132at 607.456 kb on + strand, within BACOVA_05132at 607.456 kb on + strand, within BACOVA_05132at 607.463 kb on + strand, within BACOVA_05132at 607.464 kb on - strand, within BACOVA_05132at 607.464 kb on - strand, within BACOVA_05132at 607.464 kb on - strand, within BACOVA_05132at 607.506 kb on - strand, within BACOVA_05132at 607.506 kb on - strand, within BACOVA_05132at 607.516 kb on + strand, within BACOVA_05132at 607.517 kb on - strand, within BACOVA_05132at 607.548 kb on - strand, within BACOVA_05132at 607.587 kb on + strand, within BACOVA_05132at 607.629 kb on + strand, within BACOVA_05132at 607.633 kb on + strand, within BACOVA_05132at 607.659 kb on - strand, within BACOVA_05132at 607.759 kb on + strand, within BACOVA_05132at 607.784 kb on - strand, within BACOVA_05132at 607.784 kb on - strand, within BACOVA_05132at 607.802 kb on + strand, within BACOVA_05132at 607.823 kb on + strand, within BACOVA_05132at 607.827 kb on + strand, within BACOVA_05132at 607.827 kb on + strand, within BACOVA_05132at 607.828 kb on - strand, within BACOVA_05132at 607.885 kb on + strand, within BACOVA_05132at 607.945 kb on - strand, within BACOVA_05132at 607.945 kb on - strand, within BACOVA_05132at 607.962 kb on + strand, within BACOVA_05132at 607.963 kb on - strand, within BACOVA_05132at 607.963 kb on - strand, within BACOVA_05132at 607.986 kb on - strand, within BACOVA_05132at 607.996 kb on + strand, within BACOVA_05132at 607.996 kb on + strand, within BACOVA_05132at 607.996 kb on + strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.997 kb on - strand, within BACOVA_05132at 607.998 kb on + strand, within BACOVA_05132at 607.998 kb on + strand, within BACOVA_05132at 607.998 kb on + strand, within BACOVA_05132at 607.999 kb on - strand, within BACOVA_05132at 607.999 kb on - strand, within BACOVA_05132at 607.999 kb on - strand, within BACOVA_05132at 608.015 kb on + strand, within BACOVA_05132at 608.015 kb on + strand, within BACOVA_05132at 608.028 kb on + strand, within BACOVA_05132at 608.029 kb on - strand, within BACOVA_05132at 608.062 kb on - strand, within BACOVA_05132at 608.086 kb on + strand, within BACOVA_05132at 608.101 kb on - strand, within BACOVA_05132at 608.116 kb on + strand, within BACOVA_05132at 608.116 kb on + strand, within BACOVA_05132at 608.117 kb on - strand, within BACOVA_05132at 608.126 kb on - strand, within BACOVA_05132at 608.134 kb on + strand, within BACOVA_05132at 608.135 kb on - strand, within BACOVA_05132at 608.156 kb on + strand, within BACOVA_05132at 608.231 kb on - strandat 608.231 kb on - strandat 608.232 kb on + strandat 608.233 kb on - strandat 608.240 kb on + strandat 608.240 kb on + strandat 608.241 kb on - strandat 608.241 kb on - strandat 608.246 kb on + strandat 608.247 kb on - strandat 608.249 kb on + strandat 608.264 kb on + strandat 608.288 kb on - strandat 608.290 kb on + strandat 608.306 kb on + strandat 608.323 kb on + strandat 608.324 kb on - strandat 608.366 kb on + strandat 608.379 kb on + strandat 608.380 kb on - strandat 608.391 kb on + strandat 608.391 kb on + strandat 608.421 kb on + strandat 608.490 kb on - strandat 608.494 kb on - strandat 608.528 kb on + strandat 608.565 kb on + strandat 608.572 kb on + strand, within BACOVA_05133at 608.645 kb on - strand, within BACOVA_05133at 608.656 kb on + strand, within BACOVA_05133at 608.667 kb on - strand, within BACOVA_05133at 608.733 kb on + strandat 608.733 kb on + strandat 608.733 kb on + strandat 608.734 kb on - strandat 608.754 kb on + strandat 608.772 kb on + strandat 608.773 kb on - strandat 608.813 kb on + strandat 608.814 kb on - strandat 608.822 kb on + strandat 608.992 kb on + strand, within BACOVA_05134at 608.992 kb on + strand, within BACOVA_05134at 608.993 kb on - strand, within BACOVA_05134at 609.026 kb on + strand, within BACOVA_05134at 609.034 kb on - strand, within BACOVA_05134at 609.058 kb on - strand, within BACOVA_05134at 609.058 kb on - strand, within BACOVA_05134at 609.111 kb on - strand, within BACOVA_05134at 609.196 kb on - strand, within BACOVA_05134at 609.227 kb on - strand, within BACOVA_05134at 609.227 kb on - strand, within BACOVA_05134

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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606,109 + BACOVA_05130 0.51 -0.7
606,315 + BACOVA_05130 0.81 -0.9
606,338 - BACOVA_05130 0.84 +0.0
606,358 + BACOVA_05130 0.87 -0.5
606,359 - BACOVA_05130 0.87 -1.9
606,363 - BACOVA_05130 0.88 +1.2
606,422 + +1.4
606,425 - +0.3
606,436 - +0.3
606,436 - -1.9
606,440 + -0.5
606,449 - -0.4
606,459 - +1.4
606,469 - +0.2
606,525 + BACOVA_05131 0.11 -0.4
606,526 - BACOVA_05131 0.12 -1.1
606,529 - BACOVA_05131 0.12 +1.4
606,681 + BACOVA_05131 0.38 -0.7
606,681 + BACOVA_05131 0.38 -0.4
606,748 - BACOVA_05131 0.49 -1.4
606,771 - BACOVA_05131 0.53 -0.0
606,776 + BACOVA_05131 0.54 +0.6
606,820 + BACOVA_05131 0.61 -0.4
606,841 - BACOVA_05131 0.65 +0.7
606,853 + BACOVA_05131 0.67 +1.3
606,902 + BACOVA_05131 0.75 -0.7
606,943 - BACOVA_05131 0.82 +0.7
606,977 - BACOVA_05131 0.88 +1.0
606,981 + BACOVA_05131 0.88 +0.6
607,021 + -1.1
607,031 - +0.5
607,031 - -1.3
607,095 + -1.6
607,104 - -0.8
607,137 + -2.0
607,138 - -3.6
607,200 - BACOVA_05132 0.11 -1.1
607,200 - BACOVA_05132 0.11 +0.2
607,233 + BACOVA_05132 0.14 -2.3
607,234 - BACOVA_05132 0.14 -2.8
607,261 + BACOVA_05132 0.16 -2.3
607,270 + BACOVA_05132 0.16 -2.7
607,271 - BACOVA_05132 0.17 -3.2
607,271 - BACOVA_05132 0.17 -1.2
607,334 - BACOVA_05132 0.22 -2.5
607,397 + BACOVA_05132 0.27 -2.9
607,398 - BACOVA_05132 0.27 -4.4
607,456 + BACOVA_05132 0.31 -4.6
607,456 + BACOVA_05132 0.31 -3.2
607,463 + BACOVA_05132 0.32 -5.3
607,464 - BACOVA_05132 0.32 -2.3
607,464 - BACOVA_05132 0.32 -2.6
607,464 - BACOVA_05132 0.32 -3.4
607,506 - BACOVA_05132 0.35 -2.5
607,506 - BACOVA_05132 0.35 -2.3
607,516 + BACOVA_05132 0.36 -4.5
607,517 - BACOVA_05132 0.36 -2.7
607,548 - BACOVA_05132 0.39 -3.3
607,587 + BACOVA_05132 0.42 -4.8
607,629 + BACOVA_05132 0.45 -3.5
607,633 + BACOVA_05132 0.45 -2.7
607,659 - BACOVA_05132 0.48 -4.4
607,759 + BACOVA_05132 0.56 -3.2
607,784 - BACOVA_05132 0.58 -2.8
607,784 - BACOVA_05132 0.58 -0.9
607,802 + BACOVA_05132 0.59 -3.5
607,823 + BACOVA_05132 0.61 -2.6
607,827 + BACOVA_05132 0.61 -2.4
607,827 + BACOVA_05132 0.61 -3.1
607,828 - BACOVA_05132 0.61 -2.3
607,885 + BACOVA_05132 0.66 -2.5
607,945 - BACOVA_05132 0.70 -2.7
607,945 - BACOVA_05132 0.70 -3.1
607,962 + BACOVA_05132 0.72 +0.4
607,963 - BACOVA_05132 0.72 -3.4
607,963 - BACOVA_05132 0.72 -3.5
607,986 - BACOVA_05132 0.74 -3.1
607,996 + BACOVA_05132 0.75 -1.0
607,996 + BACOVA_05132 0.75 -0.8
607,996 + BACOVA_05132 0.75 -4.7
607,997 - BACOVA_05132 0.75 -2.5
607,997 - BACOVA_05132 0.75 -2.5
607,997 - BACOVA_05132 0.75 -1.9
607,997 - BACOVA_05132 0.75 -0.7
607,997 - BACOVA_05132 0.75 -2.6
607,997 - BACOVA_05132 0.75 -4.1
607,997 - BACOVA_05132 0.75 -3.0
607,998 + BACOVA_05132 0.75 -5.5
607,998 + BACOVA_05132 0.75 -2.8
607,998 + BACOVA_05132 0.75 -2.2
607,999 - BACOVA_05132 0.75 -1.7
607,999 - BACOVA_05132 0.75 -4.5
607,999 - BACOVA_05132 0.75 -2.7
608,015 + BACOVA_05132 0.76 -3.6
608,015 + BACOVA_05132 0.76 -4.3
608,028 + BACOVA_05132 0.77 -5.9
608,029 - BACOVA_05132 0.77 -3.1
608,062 - BACOVA_05132 0.80 -4.2
608,086 + BACOVA_05132 0.82 -4.5
608,101 - BACOVA_05132 0.83 -2.3
608,116 + BACOVA_05132 0.84 -4.0
608,116 + BACOVA_05132 0.84 -3.5
608,117 - BACOVA_05132 0.84 -2.7
608,126 - BACOVA_05132 0.85 -2.9
608,134 + BACOVA_05132 0.86 -2.7
608,135 - BACOVA_05132 0.86 -1.6
608,156 + BACOVA_05132 0.87 -2.2
608,231 - -1.5
608,231 - -1.8
608,232 + -5.3
608,233 - -3.5
608,240 + +0.6
608,240 + -4.5
608,241 - -3.8
608,241 - -0.7
608,246 + -2.1
608,247 - -3.2
608,249 + -5.0
608,264 + -3.0
608,288 - -2.7
608,290 + -1.3
608,306 + -2.8
608,323 + -0.2
608,324 - +0.5
608,366 + -2.0
608,379 + -1.4
608,380 - +0.9
608,391 + -1.1
608,391 + -2.3
608,421 + -0.4
608,490 - -0.9
608,494 - -2.0
608,528 + +3.0
608,565 + -0.4
608,572 + BACOVA_05133 0.13 +0.1
608,645 - BACOVA_05133 0.52 +0.4
608,656 + BACOVA_05133 0.58 -1.3
608,667 - BACOVA_05133 0.63 +1.7
608,733 + -0.5
608,733 + -1.1
608,733 + -2.0
608,734 - -1.6
608,754 + -3.3
608,772 + -1.0
608,773 - -0.4
608,813 + -1.4
608,814 - +0.3
608,822 + -1.4
608,992 + BACOVA_05134 0.23 -1.4
608,992 + BACOVA_05134 0.23 -1.3
608,993 - BACOVA_05134 0.23 +0.9
609,026 + BACOVA_05134 0.26 -1.6
609,034 - BACOVA_05134 0.26 -1.5
609,058 - BACOVA_05134 0.28 -1.3
609,058 - BACOVA_05134 0.28 -0.5
609,111 - BACOVA_05134 0.33 +0.3
609,196 - BACOVA_05134 0.40 -0.8
609,227 - BACOVA_05134 0.43 -1.3
609,227 - BACOVA_05134 0.43 -2.5

Or see this region's nucleotide sequence