Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05130

Experiment: D-Arabinose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05129 and BACOVA_05130 are separated by 21 nucleotidesBACOVA_05130 and BACOVA_05131 are separated by 8 nucleotidesBACOVA_05131 and BACOVA_05132 are separated by 13 nucleotides BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728 _05129 BACOVA_05130: BACOVA_05130 - RNA methyltransferase, RsmE family, at 605,750 to 606,448 _05130 BACOVA_05131: BACOVA_05131 - hypothetical protein, at 606,457 to 607,050 _05131 BACOVA_05132: BACOVA_05132 - nucleoside transporter, at 607,064 to 608,314 _05132 Position (kb) 605 606 607Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 604.751 kb on + strand, within BACOVA_05129at 604.792 kb on - strand, within BACOVA_05129at 604.848 kb on + strand, within BACOVA_05129at 604.852 kb on + strand, within BACOVA_05129at 604.861 kb on + strand, within BACOVA_05129at 604.962 kb on - strand, within BACOVA_05129at 604.979 kb on + strand, within BACOVA_05129at 604.980 kb on - strand, within BACOVA_05129at 605.040 kb on + strand, within BACOVA_05129at 605.077 kb on + strand, within BACOVA_05129at 605.077 kb on + strand, within BACOVA_05129at 605.078 kb on - strand, within BACOVA_05129at 605.129 kb on - strand, within BACOVA_05129at 605.132 kb on - strand, within BACOVA_05129at 605.132 kb on - strand, within BACOVA_05129at 605.179 kb on + strand, within BACOVA_05129at 605.180 kb on - strand, within BACOVA_05129at 605.210 kb on + strand, within BACOVA_05129at 605.211 kb on - strand, within BACOVA_05129at 605.219 kb on - strand, within BACOVA_05129at 605.221 kb on + strand, within BACOVA_05129at 605.339 kb on - strand, within BACOVA_05129at 605.368 kb on + strand, within BACOVA_05129at 605.400 kb on + strand, within BACOVA_05129at 605.504 kb on + strand, within BACOVA_05129at 605.567 kb on - strand, within BACOVA_05129at 605.567 kb on - strand, within BACOVA_05129at 605.586 kb on - strandat 605.698 kb on + strandat 605.698 kb on + strandat 605.698 kb on + strandat 605.699 kb on - strandat 605.702 kb on + strandat 605.702 kb on + strandat 605.702 kb on + strandat 605.703 kb on - strandat 605.703 kb on - strandat 605.703 kb on - strandat 605.708 kb on - strandat 605.722 kb on + strandat 605.723 kb on - strandat 605.742 kb on + strandat 605.742 kb on + strandat 605.742 kb on + strandat 605.743 kb on - strandat 605.743 kb on - strandat 605.894 kb on + strand, within BACOVA_05130at 605.894 kb on + strand, within BACOVA_05130at 605.939 kb on + strand, within BACOVA_05130at 605.940 kb on - strand, within BACOVA_05130at 605.958 kb on + strand, within BACOVA_05130at 605.971 kb on + strand, within BACOVA_05130at 605.986 kb on + strand, within BACOVA_05130at 606.109 kb on + strand, within BACOVA_05130at 606.315 kb on + strand, within BACOVA_05130at 606.338 kb on - strand, within BACOVA_05130at 606.358 kb on + strand, within BACOVA_05130at 606.359 kb on - strand, within BACOVA_05130at 606.363 kb on - strand, within BACOVA_05130at 606.422 kb on + strandat 606.425 kb on - strandat 606.436 kb on - strandat 606.436 kb on - strandat 606.440 kb on + strandat 606.449 kb on - strandat 606.459 kb on - strandat 606.469 kb on - strandat 606.525 kb on + strand, within BACOVA_05131at 606.526 kb on - strand, within BACOVA_05131at 606.529 kb on - strand, within BACOVA_05131at 606.681 kb on + strand, within BACOVA_05131at 606.681 kb on + strand, within BACOVA_05131at 606.748 kb on - strand, within BACOVA_05131at 606.771 kb on - strand, within BACOVA_05131at 606.776 kb on + strand, within BACOVA_05131at 606.820 kb on + strand, within BACOVA_05131at 606.841 kb on - strand, within BACOVA_05131at 606.853 kb on + strand, within BACOVA_05131at 606.902 kb on + strand, within BACOVA_05131at 606.943 kb on - strand, within BACOVA_05131at 606.977 kb on - strand, within BACOVA_05131at 606.981 kb on + strand, within BACOVA_05131at 607.021 kb on + strandat 607.031 kb on - strandat 607.031 kb on - strandat 607.095 kb on + strandat 607.104 kb on - strandat 607.137 kb on + strandat 607.138 kb on - strandat 607.200 kb on - strand, within BACOVA_05132at 607.200 kb on - strand, within BACOVA_05132at 607.233 kb on + strand, within BACOVA_05132at 607.234 kb on - strand, within BACOVA_05132at 607.261 kb on + strand, within BACOVA_05132at 607.270 kb on + strand, within BACOVA_05132at 607.271 kb on - strand, within BACOVA_05132at 607.271 kb on - strand, within BACOVA_05132at 607.334 kb on - strand, within BACOVA_05132at 607.397 kb on + strand, within BACOVA_05132at 607.398 kb on - strand, within BACOVA_05132

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
remove
604,751 + BACOVA_05129 0.38 +0.3
604,792 - BACOVA_05129 0.41 +0.4
604,848 + BACOVA_05129 0.44 -2.0
604,852 + BACOVA_05129 0.44 +1.2
604,861 + BACOVA_05129 0.45 -0.9
604,962 - BACOVA_05129 0.51 +0.4
604,979 + BACOVA_05129 0.52 -1.0
604,980 - BACOVA_05129 0.53 +0.6
605,040 + BACOVA_05129 0.56 +0.9
605,077 + BACOVA_05129 0.59 +0.2
605,077 + BACOVA_05129 0.59 +0.0
605,078 - BACOVA_05129 0.59 +0.9
605,129 - BACOVA_05129 0.62 -0.1
605,132 - BACOVA_05129 0.62 -0.4
605,132 - BACOVA_05129 0.62 -0.6
605,179 + BACOVA_05129 0.65 +0.6
605,180 - BACOVA_05129 0.65 +0.6
605,210 + BACOVA_05129 0.67 -0.1
605,211 - BACOVA_05129 0.67 -0.7
605,219 - BACOVA_05129 0.68 +0.5
605,221 + BACOVA_05129 0.68 -1.9
605,339 - BACOVA_05129 0.75 +0.6
605,368 + BACOVA_05129 0.77 +2.1
605,400 + BACOVA_05129 0.79 -0.6
605,504 + BACOVA_05129 0.86 +1.1
605,567 - BACOVA_05129 0.90 +0.7
605,567 - BACOVA_05129 0.90 +0.2
605,586 - -2.2
605,698 + -0.6
605,698 + -0.7
605,698 + +0.6
605,699 - -0.2
605,702 + +1.2
605,702 + -2.5
605,702 + +0.4
605,703 - -1.8
605,703 - +0.2
605,703 - +0.2
605,708 - +1.7
605,722 + -0.6
605,723 - -0.4
605,742 + +0.5
605,742 + -0.7
605,742 + +0.9
605,743 - -0.1
605,743 - +0.2
605,894 + BACOVA_05130 0.21 +0.9
605,894 + BACOVA_05130 0.21 -0.7
605,939 + BACOVA_05130 0.27 -0.2
605,940 - BACOVA_05130 0.27 +0.5
605,958 + BACOVA_05130 0.30 +0.9
605,971 + BACOVA_05130 0.32 -0.1
605,986 + BACOVA_05130 0.34 -1.5
606,109 + BACOVA_05130 0.51 -0.7
606,315 + BACOVA_05130 0.81 -0.9
606,338 - BACOVA_05130 0.84 +0.0
606,358 + BACOVA_05130 0.87 -0.5
606,359 - BACOVA_05130 0.87 -1.9
606,363 - BACOVA_05130 0.88 +1.2
606,422 + +1.4
606,425 - +0.3
606,436 - +0.3
606,436 - -1.9
606,440 + -0.5
606,449 - -0.4
606,459 - +1.4
606,469 - +0.2
606,525 + BACOVA_05131 0.11 -0.4
606,526 - BACOVA_05131 0.12 -1.1
606,529 - BACOVA_05131 0.12 +1.4
606,681 + BACOVA_05131 0.38 -0.7
606,681 + BACOVA_05131 0.38 -0.4
606,748 - BACOVA_05131 0.49 -1.4
606,771 - BACOVA_05131 0.53 -0.0
606,776 + BACOVA_05131 0.54 +0.6
606,820 + BACOVA_05131 0.61 -0.4
606,841 - BACOVA_05131 0.65 +0.7
606,853 + BACOVA_05131 0.67 +1.3
606,902 + BACOVA_05131 0.75 -0.7
606,943 - BACOVA_05131 0.82 +0.7
606,977 - BACOVA_05131 0.88 +1.0
606,981 + BACOVA_05131 0.88 +0.6
607,021 + -1.1
607,031 - +0.5
607,031 - -1.3
607,095 + -1.6
607,104 - -0.8
607,137 + -2.0
607,138 - -3.6
607,200 - BACOVA_05132 0.11 -1.1
607,200 - BACOVA_05132 0.11 +0.2
607,233 + BACOVA_05132 0.14 -2.3
607,234 - BACOVA_05132 0.14 -2.8
607,261 + BACOVA_05132 0.16 -2.3
607,270 + BACOVA_05132 0.16 -2.7
607,271 - BACOVA_05132 0.17 -3.2
607,271 - BACOVA_05132 0.17 -1.2
607,334 - BACOVA_05132 0.22 -2.5
607,397 + BACOVA_05132 0.27 -2.9
607,398 - BACOVA_05132 0.27 -4.4

Or see this region's nucleotide sequence