Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05126 and BACOVA_05127 are separated by 23 nucleotides BACOVA_05127 and BACOVA_05128 are separated by 28 nucleotides BACOVA_05128 and BACOVA_05129 are separated by 20 nucleotides
BACOVA_05126: BACOVA_05126 - TonB-dependent receptor plug domain protein, at 599,517 to 602,168
_05126
BACOVA_05127: BACOVA_05127 - hypothetical protein, at 602,192 to 603,457
_05127
BACOVA_05128: BACOVA_05128 - ABC transporter, ATP-binding protein, at 603,486 to 604,130
_05128
BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728
_05129
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 601.201 kb on + strand, within BACOVA_05126 at 601.201 kb on + strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.352 kb on + strand, within BACOVA_05126 at 601.401 kb on - strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.447 kb on + strand, within BACOVA_05126 at 601.452 kb on - strand, within BACOVA_05126 at 601.474 kb on - strand, within BACOVA_05126 at 601.496 kb on + strand, within BACOVA_05126 at 601.652 kb on + strand, within BACOVA_05126 at 601.653 kb on - strand, within BACOVA_05126 at 601.654 kb on + strand, within BACOVA_05126 at 601.655 kb on - strand, within BACOVA_05126 at 601.686 kb on - strand, within BACOVA_05126 at 601.700 kb on + strand, within BACOVA_05126 at 601.701 kb on - strand, within BACOVA_05126 at 601.704 kb on - strand, within BACOVA_05126 at 601.739 kb on - strand, within BACOVA_05126 at 601.760 kb on + strand, within BACOVA_05126 at 601.776 kb on - strand, within BACOVA_05126 at 601.790 kb on - strand, within BACOVA_05126 at 601.832 kb on + strand, within BACOVA_05126 at 601.872 kb on + strand, within BACOVA_05126 at 601.877 kb on + strand, within BACOVA_05126 at 601.904 kb on + strand at 601.925 kb on + strand at 601.928 kb on + strand at 602.010 kb on + strand at 602.015 kb on - strand at 602.044 kb on - strand at 602.060 kb on + strand at 602.060 kb on + strand at 602.066 kb on + strand at 602.067 kb on - strand at 602.067 kb on - strand at 602.074 kb on - strand at 602.109 kb on + strand at 602.110 kb on - strand at 602.130 kb on + strand at 602.131 kb on - strand at 602.131 kb on - strand at 602.139 kb on - strand at 602.153 kb on + strand at 602.169 kb on - strand at 602.173 kb on + strand at 602.173 kb on + strand at 602.187 kb on + strand at 602.187 kb on + strand at 602.194 kb on - strand at 602.240 kb on + strand at 602.245 kb on + strand at 602.275 kb on + strand at 602.275 kb on + strand at 602.276 kb on - strand at 602.282 kb on - strand at 602.325 kb on - strand, within BACOVA_05127 at 602.343 kb on - strand, within BACOVA_05127 at 602.370 kb on - strand, within BACOVA_05127 at 602.384 kb on + strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.435 kb on + strand, within BACOVA_05127 at 602.436 kb on - strand, within BACOVA_05127 at 602.465 kb on + strand, within BACOVA_05127 at 602.466 kb on - strand, within BACOVA_05127 at 602.485 kb on + strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.526 kb on + strand, within BACOVA_05127 at 602.527 kb on - strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.549 kb on + strand, within BACOVA_05127 at 602.564 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.570 kb on - strand, within BACOVA_05127 at 602.593 kb on - strand, within BACOVA_05127 at 602.618 kb on - strand, within BACOVA_05127 at 602.814 kb on + strand, within BACOVA_05127 at 602.845 kb on + strand, within BACOVA_05127 at 602.846 kb on - strand, within BACOVA_05127 at 602.848 kb on + strand, within BACOVA_05127 at 602.934 kb on + strand, within BACOVA_05127 at 602.957 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 603.037 kb on + strand, within BACOVA_05127 at 603.116 kb on + strand, within BACOVA_05127 at 603.172 kb on + strand, within BACOVA_05127 at 603.172 kb on + strand, within BACOVA_05127 at 603.173 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.218 kb on - strand, within BACOVA_05127 at 603.221 kb on + strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.291 kb on - strand, within BACOVA_05127 at 603.295 kb on + strand, within BACOVA_05127 at 603.296 kb on - strand, within BACOVA_05127 at 603.303 kb on - strand, within BACOVA_05127 at 603.320 kb on + strand, within BACOVA_05127 at 603.361 kb on + strand at 603.362 kb on - strand at 603.458 kb on + strand at 603.458 kb on + strand at 603.459 kb on - strand at 603.459 kb on - strand at 603.473 kb on - strand at 603.484 kb on + strand at 603.484 kb on + strand at 603.485 kb on - strand at 603.485 kb on - strand at 603.501 kb on - strand at 603.501 kb on - strand at 603.509 kb on - strand at 603.605 kb on + strand, within BACOVA_05128 at 603.763 kb on - strand, within BACOVA_05128 at 603.797 kb on + strand, within BACOVA_05128 at 603.827 kb on + strand, within BACOVA_05128 at 603.847 kb on - strand, within BACOVA_05128 at 603.868 kb on - strand, within BACOVA_05128 at 603.907 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.968 kb on - strand, within BACOVA_05128 at 603.971 kb on + strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.973 kb on + strand, within BACOVA_05128 at 603.974 kb on - strand, within BACOVA_05128 at 604.013 kb on - strand, within BACOVA_05128 at 604.021 kb on + strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.122 kb on - strand at 604.122 kb on - strand at 604.124 kb on + strand at 604.124 kb on + strand at 604.125 kb on - strand at 604.141 kb on + strand at 604.143 kb on + strand at 604.149 kb on + strand at 604.152 kb on + strand at 604.152 kb on + strand at 604.153 kb on - strand at 604.203 kb on - strand at 604.203 kb on - strand at 604.291 kb on + strand at 604.292 kb on - strand at 604.293 kb on + strand at 604.293 kb on + strand at 604.300 kb on + strand at 604.300 kb on + strand at 604.375 kb on + strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.380 kb on - strand, within BACOVA_05129 at 604.408 kb on - strand, within BACOVA_05129
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 601,201 + BACOVA_05126 0.63 -1.9 601,201 + BACOVA_05126 0.63 +0.4 601,202 - BACOVA_05126 0.64 +1.2 601,202 - BACOVA_05126 0.64 +0.2 601,202 - BACOVA_05126 0.64 -1.0 601,308 + BACOVA_05126 0.68 +0.4 601,308 + BACOVA_05126 0.68 -0.4 601,309 - BACOVA_05126 0.68 -0.8 601,309 - BACOVA_05126 0.68 +0.6 601,352 + BACOVA_05126 0.69 +0.2 601,401 - BACOVA_05126 0.71 -0.2 601,432 + BACOVA_05126 0.72 +0.7 601,432 + BACOVA_05126 0.72 +0.0 601,447 + BACOVA_05126 0.73 -1.0 601,452 - BACOVA_05126 0.73 +0.2 601,474 - BACOVA_05126 0.74 +2.0 601,496 + BACOVA_05126 0.75 -0.4 601,652 + BACOVA_05126 0.81 +1.7 601,653 - BACOVA_05126 0.81 -0.9 601,654 + BACOVA_05126 0.81 +0.5 601,655 - BACOVA_05126 0.81 +0.5 601,686 - BACOVA_05126 0.82 +0.6 601,700 + BACOVA_05126 0.82 +0.7 601,701 - BACOVA_05126 0.82 -0.5 601,704 - BACOVA_05126 0.82 +0.2 601,739 - BACOVA_05126 0.84 +1.7 601,760 + BACOVA_05126 0.85 -0.3 601,776 - BACOVA_05126 0.85 -0.7 601,790 - BACOVA_05126 0.86 -1.4 601,832 + BACOVA_05126 0.87 -2.0 601,872 + BACOVA_05126 0.89 -0.5 601,877 + BACOVA_05126 0.89 +0.3 601,904 + -0.8 601,925 + -0.1 601,928 + +1.4 602,010 + +0.7 602,015 - -0.4 602,044 - -2.3 602,060 + +1.2 602,060 + -1.8 602,066 + -0.5 602,067 - -1.4 602,067 - -0.4 602,074 - -1.4 602,109 + -0.2 602,110 - -0.5 602,130 + -1.9 602,131 - -0.2 602,131 - +0.8 602,139 - +0.7 602,153 + +0.3 602,169 - +0.3 602,173 + -2.3 602,173 + +0.2 602,187 + +1.2 602,187 + +0.7 602,194 - -1.1 602,240 + +2.4 602,245 + +0.9 602,275 + -0.8 602,275 + +1.4 602,276 - -0.4 602,282 - +0.6 602,325 - BACOVA_05127 0.11 +0.4 602,343 - BACOVA_05127 0.12 -1.9 602,370 - BACOVA_05127 0.14 +0.8 602,384 + BACOVA_05127 0.15 +0.0 602,385 - BACOVA_05127 0.15 +2.4 602,385 - BACOVA_05127 0.15 -0.3 602,435 + BACOVA_05127 0.19 -1.7 602,436 - BACOVA_05127 0.19 +1.9 602,465 + BACOVA_05127 0.22 -0.1 602,466 - BACOVA_05127 0.22 +0.6 602,485 + BACOVA_05127 0.23 +0.9 602,523 - BACOVA_05127 0.26 +0.0 602,523 - BACOVA_05127 0.26 -1.0 602,526 + BACOVA_05127 0.26 -0.1 602,527 - BACOVA_05127 0.26 -0.3 602,545 + BACOVA_05127 0.28 -0.8 602,545 + BACOVA_05127 0.28 -0.3 602,545 + BACOVA_05127 0.28 +0.7 602,549 + BACOVA_05127 0.28 -1.2 602,564 + BACOVA_05127 0.29 +0.7 602,569 + BACOVA_05127 0.30 +0.9 602,569 + BACOVA_05127 0.30 -0.4 602,570 - BACOVA_05127 0.30 +0.7 602,593 - BACOVA_05127 0.32 +0.3 602,618 - BACOVA_05127 0.34 -0.7 602,814 + BACOVA_05127 0.49 +0.4 602,845 + BACOVA_05127 0.52 -1.3 602,846 - BACOVA_05127 0.52 +1.3 602,848 + BACOVA_05127 0.52 -1.6 602,934 + BACOVA_05127 0.59 -1.1 602,957 + BACOVA_05127 0.60 +1.2 602,962 + BACOVA_05127 0.61 -0.8 602,962 + BACOVA_05127 0.61 -1.1 602,962 + BACOVA_05127 0.61 +0.4 602,962 + BACOVA_05127 0.61 -1.4 602,962 + BACOVA_05127 0.61 -0.1 602,962 + BACOVA_05127 0.61 +0.3 602,962 + BACOVA_05127 0.61 -0.3 602,963 - BACOVA_05127 0.61 +0.7 602,963 - BACOVA_05127 0.61 -2.1 603,037 + BACOVA_05127 0.67 +0.6 603,116 + BACOVA_05127 0.73 +1.2 603,172 + BACOVA_05127 0.77 -1.5 603,172 + BACOVA_05127 0.77 -0.3 603,173 - BACOVA_05127 0.77 -0.2 603,176 - BACOVA_05127 0.78 -0.4 603,176 - BACOVA_05127 0.78 +0.3 603,218 - BACOVA_05127 0.81 -1.2 603,221 + BACOVA_05127 0.81 -1.8 603,222 - BACOVA_05127 0.81 +1.7 603,222 - BACOVA_05127 0.81 +0.0 603,291 - BACOVA_05127 0.87 +0.9 603,295 + BACOVA_05127 0.87 +0.7 603,296 - BACOVA_05127 0.87 +1.5 603,303 - BACOVA_05127 0.88 -0.5 603,320 + BACOVA_05127 0.89 +0.3 603,361 + -0.5 603,362 - +0.3 603,458 + -0.3 603,458 + -0.6 603,459 - -0.1 603,459 - +1.4 603,473 - -0.6 603,484 + -0.0 603,484 + -0.8 603,485 - -1.5 603,485 - +0.5 603,501 - +0.7 603,501 - -1.9 603,509 - -0.6 603,605 + BACOVA_05128 0.18 +0.3 603,763 - BACOVA_05128 0.43 -0.6 603,797 + BACOVA_05128 0.48 -1.2 603,827 + BACOVA_05128 0.53 -0.9 603,847 - BACOVA_05128 0.56 +1.6 603,868 - BACOVA_05128 0.59 -0.2 603,907 + BACOVA_05128 0.65 +0.7 603,967 + BACOVA_05128 0.75 -0.7 603,967 + BACOVA_05128 0.75 -2.1 603,968 - BACOVA_05128 0.75 -0.7 603,971 + BACOVA_05128 0.75 -0.5 603,972 - BACOVA_05128 0.75 +1.2 603,972 - BACOVA_05128 0.75 +1.2 603,973 + BACOVA_05128 0.76 +0.8 603,974 - BACOVA_05128 0.76 -1.0 604,013 - BACOVA_05128 0.82 +0.2 604,021 + BACOVA_05128 0.83 -1.1 604,022 - BACOVA_05128 0.83 +0.1 604,022 - BACOVA_05128 0.83 -1.0 604,022 - BACOVA_05128 0.83 -1.3 604,122 - +0.6 604,122 - -0.2 604,124 + -0.7 604,124 + -1.3 604,125 - +0.6 604,141 + -1.0 604,143 + -0.1 604,149 + -2.3 604,152 + +0.8 604,152 + +0.6 604,153 - -1.1 604,203 - -0.9 604,203 - +2.2 604,291 + -0.7 604,292 - -1.1 604,293 + +0.2 604,293 + +1.7 604,300 + -0.5 604,300 + +0.6 604,375 + BACOVA_05129 0.14 -2.2 604,376 - BACOVA_05129 0.14 -1.2 604,376 - BACOVA_05129 0.14 -1.0 604,380 - BACOVA_05129 0.15 -0.0 604,408 - BACOVA_05129 0.16 -0.7
Or see this region's nucleotide sequence