Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05123 and BACOVA_05124 are separated by 120 nucleotides BACOVA_05124 and BACOVA_05125 overlap by 1 nucleotides BACOVA_05125 and BACOVA_05126 are separated by 389 nucleotides BACOVA_05126 and BACOVA_05127 are separated by 23 nucleotides
BACOVA_05123: BACOVA_05123 - tRNA dimethylallyltransferase, at 597,875 to 598,795
_05123
BACOVA_05124: BACOVA_05124 - hypothetical protein, at 598,916 to 599,020
_05124
BACOVA_05125: BACOVA_05125 - hypothetical protein, at 599,020 to 599,127
_05125
BACOVA_05126: BACOVA_05126 - TonB-dependent receptor plug domain protein, at 599,517 to 602,168
_05126
BACOVA_05127: BACOVA_05127 - hypothetical protein, at 602,192 to 603,457
_05127
Position (kb) 599
600
601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 598.569 kb on + strand, within BACOVA_05123 at 598.615 kb on + strand, within BACOVA_05123 at 598.616 kb on - strand, within BACOVA_05123 at 598.630 kb on + strand, within BACOVA_05123 at 598.632 kb on + strand, within BACOVA_05123 at 598.633 kb on - strand, within BACOVA_05123 at 598.672 kb on + strand, within BACOVA_05123 at 598.675 kb on - strand, within BACOVA_05123 at 598.676 kb on + strand, within BACOVA_05123 at 598.676 kb on + strand, within BACOVA_05123 at 598.676 kb on + strand, within BACOVA_05123 at 598.759 kb on + strand at 598.770 kb on - strand at 598.785 kb on + strand at 598.795 kb on + strand at 598.796 kb on - strand at 598.848 kb on + strand at 598.873 kb on + strand at 598.874 kb on - strand at 598.874 kb on - strand at 598.894 kb on + strand at 598.907 kb on - strand at 598.913 kb on + strand at 598.935 kb on + strand, within BACOVA_05124 at 598.972 kb on + strand, within BACOVA_05124 at 598.972 kb on + strand, within BACOVA_05124 at 598.973 kb on - strand, within BACOVA_05124 at 598.976 kb on + strand, within BACOVA_05124 at 598.981 kb on + strand, within BACOVA_05124 at 598.984 kb on + strand, within BACOVA_05124 at 598.985 kb on - strand, within BACOVA_05124 at 599.085 kb on - strand, within BACOVA_05125 at 599.125 kb on + strand at 599.134 kb on + strand at 599.191 kb on + strand at 599.200 kb on + strand at 599.202 kb on + strand at 599.221 kb on + strand at 599.224 kb on - strand at 599.266 kb on + strand at 599.278 kb on - strand at 599.283 kb on - strand at 599.305 kb on - strand at 599.309 kb on + strand at 599.343 kb on + strand at 599.355 kb on - strand at 599.360 kb on - strand at 599.400 kb on + strand at 599.408 kb on - strand at 599.413 kb on - strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.421 kb on + strand at 599.422 kb on - strand at 599.422 kb on - strand at 599.424 kb on - strand at 599.424 kb on - strand at 599.424 kb on - strand at 599.435 kb on - strand at 599.460 kb on - strand at 599.471 kb on + strand at 599.471 kb on + strand at 599.479 kb on + strand at 599.480 kb on - strand at 599.518 kb on + strand at 599.518 kb on + strand at 599.539 kb on - strand at 599.541 kb on + strand at 599.550 kb on + strand at 599.565 kb on - strand at 599.578 kb on - strand at 599.583 kb on + strand at 599.583 kb on + strand at 599.584 kb on - strand at 599.584 kb on - strand at 599.584 kb on - strand at 599.722 kb on + strand at 599.722 kb on + strand at 599.726 kb on + strand at 599.768 kb on + strand at 599.769 kb on - strand at 599.769 kb on - strand at 599.826 kb on - strand, within BACOVA_05126 at 599.828 kb on + strand, within BACOVA_05126 at 599.859 kb on + strand, within BACOVA_05126 at 599.860 kb on - strand, within BACOVA_05126 at 599.903 kb on + strand, within BACOVA_05126 at 599.947 kb on + strand, within BACOVA_05126 at 599.947 kb on + strand, within BACOVA_05126 at 599.948 kb on - strand, within BACOVA_05126 at 599.997 kb on - strand, within BACOVA_05126 at 600.000 kb on + strand, within BACOVA_05126 at 600.000 kb on + strand, within BACOVA_05126 at 600.000 kb on + strand, within BACOVA_05126 at 600.001 kb on - strand, within BACOVA_05126 at 600.023 kb on + strand, within BACOVA_05126 at 600.100 kb on + strand, within BACOVA_05126 at 600.100 kb on + strand, within BACOVA_05126 at 600.100 kb on + strand, within BACOVA_05126 at 600.111 kb on - strand, within BACOVA_05126 at 600.181 kb on + strand, within BACOVA_05126 at 600.205 kb on + strand, within BACOVA_05126 at 600.205 kb on + strand, within BACOVA_05126 at 600.206 kb on - strand, within BACOVA_05126 at 600.233 kb on - strand, within BACOVA_05126 at 600.341 kb on + strand, within BACOVA_05126 at 600.369 kb on - strand, within BACOVA_05126 at 600.369 kb on - strand, within BACOVA_05126 at 600.459 kb on - strand, within BACOVA_05126 at 600.477 kb on - strand, within BACOVA_05126 at 600.477 kb on - strand, within BACOVA_05126 at 600.497 kb on + strand, within BACOVA_05126 at 600.497 kb on + strand, within BACOVA_05126 at 600.498 kb on - strand, within BACOVA_05126 at 600.530 kb on - strand, within BACOVA_05126 at 600.530 kb on - strand, within BACOVA_05126 at 600.530 kb on - strand, within BACOVA_05126 at 600.561 kb on + strand, within BACOVA_05126 at 600.562 kb on - strand, within BACOVA_05126 at 600.562 kb on - strand, within BACOVA_05126 at 600.666 kb on + strand, within BACOVA_05126 at 600.666 kb on + strand, within BACOVA_05126 at 600.666 kb on + strand, within BACOVA_05126 at 600.670 kb on + strand, within BACOVA_05126 at 600.693 kb on + strand, within BACOVA_05126 at 600.694 kb on - strand, within BACOVA_05126 at 600.710 kb on + strand, within BACOVA_05126 at 600.710 kb on + strand, within BACOVA_05126 at 600.820 kb on - strand, within BACOVA_05126 at 600.848 kb on + strand, within BACOVA_05126 at 600.964 kb on + strand, within BACOVA_05126 at 601.109 kb on + strand, within BACOVA_05126 at 601.109 kb on + strand, within BACOVA_05126 at 601.109 kb on + strand, within BACOVA_05126 at 601.111 kb on + strand, within BACOVA_05126 at 601.170 kb on - strand, within BACOVA_05126 at 601.170 kb on - strand, within BACOVA_05126 at 601.201 kb on + strand, within BACOVA_05126 at 601.201 kb on + strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.352 kb on + strand, within BACOVA_05126 at 601.401 kb on - strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.447 kb on + strand, within BACOVA_05126 at 601.452 kb on - strand, within BACOVA_05126 at 601.474 kb on - strand, within BACOVA_05126 at 601.496 kb on + strand, within BACOVA_05126 at 601.652 kb on + strand, within BACOVA_05126 at 601.653 kb on - strand, within BACOVA_05126 at 601.654 kb on + strand, within BACOVA_05126 at 601.655 kb on - strand, within BACOVA_05126 at 601.686 kb on - strand, within BACOVA_05126 at 601.700 kb on + strand, within BACOVA_05126 at 601.701 kb on - strand, within BACOVA_05126 at 601.704 kb on - strand, within BACOVA_05126 at 601.739 kb on - strand, within BACOVA_05126 at 601.760 kb on + strand, within BACOVA_05126 at 601.776 kb on - strand, within BACOVA_05126 at 601.790 kb on - strand, within BACOVA_05126 at 601.832 kb on + strand, within BACOVA_05126 at 601.872 kb on + strand, within BACOVA_05126 at 601.877 kb on + strand, within BACOVA_05126 at 601.904 kb on + strand at 601.925 kb on + strand at 601.928 kb on + strand at 602.010 kb on + strand at 602.015 kb on - strand at 602.044 kb on - strand at 602.060 kb on + strand at 602.060 kb on + strand at 602.066 kb on + strand at 602.067 kb on - strand at 602.067 kb on - strand at 602.074 kb on - strand at 602.109 kb on + strand at 602.110 kb on - strand at 602.130 kb on + strand at 602.131 kb on - strand at 602.131 kb on - strand at 602.139 kb on - strand at 602.153 kb on + strand at 602.169 kb on - strand at 602.173 kb on + strand at 602.173 kb on + strand at 602.187 kb on + strand at 602.187 kb on + strand at 602.194 kb on - strand at 602.240 kb on + strand at 602.245 kb on + strand at 602.275 kb on + strand at 602.275 kb on + strand at 602.276 kb on - strand at 602.282 kb on - strand at 602.325 kb on - strand, within BACOVA_05127 at 602.343 kb on - strand, within BACOVA_05127 at 602.370 kb on - strand, within BACOVA_05127 at 602.384 kb on + strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.435 kb on + strand, within BACOVA_05127 at 602.436 kb on - strand, within BACOVA_05127 at 602.465 kb on + strand, within BACOVA_05127 at 602.466 kb on - strand, within BACOVA_05127 at 602.485 kb on + strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.526 kb on + strand, within BACOVA_05127 at 602.527 kb on - strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.549 kb on + strand, within BACOVA_05127 at 602.564 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.570 kb on - strand, within BACOVA_05127 at 602.593 kb on - strand, within BACOVA_05127 at 602.618 kb on - strand, within BACOVA_05127 at 602.814 kb on + strand, within BACOVA_05127 at 602.845 kb on + strand, within BACOVA_05127 at 602.846 kb on - strand, within BACOVA_05127 at 602.848 kb on + strand, within BACOVA_05127 at 602.934 kb on + strand, within BACOVA_05127 at 602.957 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 603.037 kb on + strand, within BACOVA_05127 at 603.116 kb on + strand, within BACOVA_05127
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 598,569 + BACOVA_05123 0.75 +1.4 598,615 + BACOVA_05123 0.80 -2.2 598,616 - BACOVA_05123 0.80 +0.3 598,630 + BACOVA_05123 0.82 +0.1 598,632 + BACOVA_05123 0.82 +0.0 598,633 - BACOVA_05123 0.82 +0.4 598,672 + BACOVA_05123 0.87 +1.1 598,675 - BACOVA_05123 0.87 -0.3 598,676 + BACOVA_05123 0.87 -1.6 598,676 + BACOVA_05123 0.87 +0.7 598,676 + BACOVA_05123 0.87 +1.7 598,759 + +0.8 598,770 - +1.2 598,785 + +0.0 598,795 + -0.7 598,796 - -1.0 598,848 + +0.6 598,873 + -0.7 598,874 - -1.1 598,874 - -0.6 598,894 + +1.9 598,907 - +1.1 598,913 + +0.1 598,935 + BACOVA_05124 0.18 +0.3 598,972 + BACOVA_05124 0.53 +0.7 598,972 + BACOVA_05124 0.53 -2.2 598,973 - BACOVA_05124 0.54 +1.1 598,976 + BACOVA_05124 0.57 +0.1 598,981 + BACOVA_05124 0.62 -1.1 598,984 + BACOVA_05124 0.65 +0.7 598,985 - BACOVA_05124 0.66 -1.1 599,085 - BACOVA_05125 0.60 +0.0 599,125 + +0.2 599,134 + -1.3 599,191 + +7.4 599,200 + +0.0 599,202 + +0.1 599,221 + +0.7 599,224 - -0.1 599,266 + +0.3 599,278 - +0.0 599,283 - -0.9 599,305 - +0.7 599,309 + +1.7 599,343 + +2.4 599,355 - -0.7 599,360 - -0.5 599,400 + -0.7 599,408 - -0.3 599,413 - -1.2 599,421 + +0.6 599,421 + -1.0 599,421 + -1.0 599,421 + -0.7 599,421 + +0.1 599,422 - +0.6 599,422 - +0.6 599,424 - +0.5 599,424 - +0.4 599,424 - +0.3 599,435 - -0.4 599,460 - -0.4 599,471 + -1.5 599,471 + +0.7 599,479 + -0.9 599,480 - -0.8 599,518 + -1.2 599,518 + -0.2 599,539 - -0.2 599,541 + -1.4 599,550 + -1.0 599,565 - +0.2 599,578 - +1.4 599,583 + -1.0 599,583 + +0.1 599,584 - +1.6 599,584 - +0.7 599,584 - -0.9 599,722 + -0.6 599,722 + +0.1 599,726 + -0.3 599,768 + -0.4 599,769 - -1.7 599,769 - +1.1 599,826 - BACOVA_05126 0.12 -0.7 599,828 + BACOVA_05126 0.12 -0.9 599,859 + BACOVA_05126 0.13 +0.1 599,860 - BACOVA_05126 0.13 -0.2 599,903 + BACOVA_05126 0.15 -1.8 599,947 + BACOVA_05126 0.16 +0.3 599,947 + BACOVA_05126 0.16 +0.8 599,948 - BACOVA_05126 0.16 -0.7 599,997 - BACOVA_05126 0.18 +0.9 600,000 + BACOVA_05126 0.18 -2.5 600,000 + BACOVA_05126 0.18 -0.8 600,000 + BACOVA_05126 0.18 -0.2 600,001 - BACOVA_05126 0.18 +0.8 600,023 + BACOVA_05126 0.19 -1.2 600,100 + BACOVA_05126 0.22 +0.2 600,100 + BACOVA_05126 0.22 +2.2 600,100 + BACOVA_05126 0.22 -0.7 600,111 - BACOVA_05126 0.22 +0.3 600,181 + BACOVA_05126 0.25 -1.2 600,205 + BACOVA_05126 0.26 -1.4 600,205 + BACOVA_05126 0.26 -1.8 600,206 - BACOVA_05126 0.26 +0.5 600,233 - BACOVA_05126 0.27 -1.2 600,341 + BACOVA_05126 0.31 -0.1 600,369 - BACOVA_05126 0.32 -2.2 600,369 - BACOVA_05126 0.32 -0.9 600,459 - BACOVA_05126 0.36 -0.1 600,477 - BACOVA_05126 0.36 -0.1 600,477 - BACOVA_05126 0.36 -2.5 600,497 + BACOVA_05126 0.37 -0.4 600,497 + BACOVA_05126 0.37 +0.3 600,498 - BACOVA_05126 0.37 -0.4 600,530 - BACOVA_05126 0.38 +1.2 600,530 - BACOVA_05126 0.38 -0.1 600,530 - BACOVA_05126 0.38 -0.1 600,561 + BACOVA_05126 0.39 +1.9 600,562 - BACOVA_05126 0.39 -0.4 600,562 - BACOVA_05126 0.39 -0.1 600,666 + BACOVA_05126 0.43 +0.7 600,666 + BACOVA_05126 0.43 +0.5 600,666 + BACOVA_05126 0.43 +0.0 600,670 + BACOVA_05126 0.43 +0.0 600,693 + BACOVA_05126 0.44 +2.4 600,694 - BACOVA_05126 0.44 -1.0 600,710 + BACOVA_05126 0.45 +1.2 600,710 + BACOVA_05126 0.45 +0.5 600,820 - BACOVA_05126 0.49 -0.1 600,848 + BACOVA_05126 0.50 -1.0 600,964 + BACOVA_05126 0.55 +0.3 601,109 + BACOVA_05126 0.60 +0.4 601,109 + BACOVA_05126 0.60 +1.0 601,109 + BACOVA_05126 0.60 -1.4 601,111 + BACOVA_05126 0.60 -1.5 601,170 - BACOVA_05126 0.62 -1.5 601,170 - BACOVA_05126 0.62 +1.4 601,201 + BACOVA_05126 0.63 -1.9 601,201 + BACOVA_05126 0.63 +0.4 601,202 - BACOVA_05126 0.64 +1.2 601,202 - BACOVA_05126 0.64 +0.2 601,202 - BACOVA_05126 0.64 -1.0 601,308 + BACOVA_05126 0.68 +0.4 601,308 + BACOVA_05126 0.68 -0.4 601,309 - BACOVA_05126 0.68 -0.8 601,309 - BACOVA_05126 0.68 +0.6 601,352 + BACOVA_05126 0.69 +0.2 601,401 - BACOVA_05126 0.71 -0.2 601,432 + BACOVA_05126 0.72 +0.7 601,432 + BACOVA_05126 0.72 +0.0 601,447 + BACOVA_05126 0.73 -1.0 601,452 - BACOVA_05126 0.73 +0.2 601,474 - BACOVA_05126 0.74 +2.0 601,496 + BACOVA_05126 0.75 -0.4 601,652 + BACOVA_05126 0.81 +1.7 601,653 - BACOVA_05126 0.81 -0.9 601,654 + BACOVA_05126 0.81 +0.5 601,655 - BACOVA_05126 0.81 +0.5 601,686 - BACOVA_05126 0.82 +0.6 601,700 + BACOVA_05126 0.82 +0.7 601,701 - BACOVA_05126 0.82 -0.5 601,704 - BACOVA_05126 0.82 +0.2 601,739 - BACOVA_05126 0.84 +1.7 601,760 + BACOVA_05126 0.85 -0.3 601,776 - BACOVA_05126 0.85 -0.7 601,790 - BACOVA_05126 0.86 -1.4 601,832 + BACOVA_05126 0.87 -2.0 601,872 + BACOVA_05126 0.89 -0.5 601,877 + BACOVA_05126 0.89 +0.3 601,904 + -0.8 601,925 + -0.1 601,928 + +1.4 602,010 + +0.7 602,015 - -0.4 602,044 - -2.3 602,060 + +1.2 602,060 + -1.8 602,066 + -0.5 602,067 - -1.4 602,067 - -0.4 602,074 - -1.4 602,109 + -0.2 602,110 - -0.5 602,130 + -1.9 602,131 - -0.2 602,131 - +0.8 602,139 - +0.7 602,153 + +0.3 602,169 - +0.3 602,173 + -2.3 602,173 + +0.2 602,187 + +1.2 602,187 + +0.7 602,194 - -1.1 602,240 + +2.4 602,245 + +0.9 602,275 + -0.8 602,275 + +1.4 602,276 - -0.4 602,282 - +0.6 602,325 - BACOVA_05127 0.11 +0.4 602,343 - BACOVA_05127 0.12 -1.9 602,370 - BACOVA_05127 0.14 +0.8 602,384 + BACOVA_05127 0.15 +0.0 602,385 - BACOVA_05127 0.15 +2.4 602,385 - BACOVA_05127 0.15 -0.3 602,435 + BACOVA_05127 0.19 -1.7 602,436 - BACOVA_05127 0.19 +1.9 602,465 + BACOVA_05127 0.22 -0.1 602,466 - BACOVA_05127 0.22 +0.6 602,485 + BACOVA_05127 0.23 +0.9 602,523 - BACOVA_05127 0.26 +0.0 602,523 - BACOVA_05127 0.26 -1.0 602,526 + BACOVA_05127 0.26 -0.1 602,527 - BACOVA_05127 0.26 -0.3 602,545 + BACOVA_05127 0.28 -0.8 602,545 + BACOVA_05127 0.28 -0.3 602,545 + BACOVA_05127 0.28 +0.7 602,549 + BACOVA_05127 0.28 -1.2 602,564 + BACOVA_05127 0.29 +0.7 602,569 + BACOVA_05127 0.30 +0.9 602,569 + BACOVA_05127 0.30 -0.4 602,570 - BACOVA_05127 0.30 +0.7 602,593 - BACOVA_05127 0.32 +0.3 602,618 - BACOVA_05127 0.34 -0.7 602,814 + BACOVA_05127 0.49 +0.4 602,845 + BACOVA_05127 0.52 -1.3 602,846 - BACOVA_05127 0.52 +1.3 602,848 + BACOVA_05127 0.52 -1.6 602,934 + BACOVA_05127 0.59 -1.1 602,957 + BACOVA_05127 0.60 +1.2 602,962 + BACOVA_05127 0.61 -0.8 602,962 + BACOVA_05127 0.61 -1.1 602,962 + BACOVA_05127 0.61 +0.4 602,962 + BACOVA_05127 0.61 -1.4 602,962 + BACOVA_05127 0.61 -0.1 602,962 + BACOVA_05127 0.61 +0.3 602,962 + BACOVA_05127 0.61 -0.3 602,963 - BACOVA_05127 0.61 +0.7 602,963 - BACOVA_05127 0.61 -2.1 603,037 + BACOVA_05127 0.67 +0.6 603,116 + BACOVA_05127 0.73 +1.2
Or see this region's nucleotide sequence