Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04968

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04967 and BACOVA_04968 overlap by 20 nucleotidesBACOVA_04968 and BACOVA_04969 are separated by 102 nucleotidesBACOVA_04969 and BACOVA_04970 are separated by 130 nucleotidesBACOVA_04970 and BACOVA_04971 are separated by 84 nucleotidesBACOVA_04971 and BACOVA_04972 are separated by 72 nucleotides BACOVA_04967: BACOVA_04967 - hypothetical protein, at 411,059 to 414,457 _04967 BACOVA_04968: BACOVA_04968 - hypothetical protein, at 414,438 to 416,198 _04968 BACOVA_04969: BACOVA_04969 - hypothetical protein, at 416,301 to 416,405 _04969 BACOVA_04970: BACOVA_04970 - hypothetical protein, at 416,536 to 416,640 _04970 BACOVA_04971: BACOVA_04971 - hypothetical protein, at 416,725 to 416,838 _04971 BACOVA_04972: BACOVA_04972 - GDSL-like protein, at 416,911 to 418,545 _04972 Position (kb) 414 415 416 417Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 413.501 kb on - strand, within BACOVA_04967at 413.515 kb on + strand, within BACOVA_04967at 413.516 kb on - strand, within BACOVA_04967at 413.516 kb on - strand, within BACOVA_04967at 413.516 kb on - strand, within BACOVA_04967at 413.516 kb on - strand, within BACOVA_04967at 413.519 kb on - strand, within BACOVA_04967at 413.532 kb on - strand, within BACOVA_04967at 413.561 kb on - strand, within BACOVA_04967at 413.581 kb on + strand, within BACOVA_04967at 413.581 kb on + strand, within BACOVA_04967at 413.581 kb on + strand, within BACOVA_04967at 413.581 kb on + strand, within BACOVA_04967at 413.582 kb on - strand, within BACOVA_04967at 413.594 kb on - strand, within BACOVA_04967at 413.612 kb on + strand, within BACOVA_04967at 413.617 kb on + strand, within BACOVA_04967at 413.617 kb on + strand, within BACOVA_04967at 413.650 kb on + strand, within BACOVA_04967at 413.655 kb on + strand, within BACOVA_04967at 413.656 kb on - strand, within BACOVA_04967at 413.656 kb on - strand, within BACOVA_04967at 413.678 kb on - strand, within BACOVA_04967at 413.721 kb on - strand, within BACOVA_04967at 413.721 kb on - strand, within BACOVA_04967at 413.723 kb on + strand, within BACOVA_04967at 413.724 kb on - strand, within BACOVA_04967at 413.728 kb on + strand, within BACOVA_04967at 413.728 kb on + strand, within BACOVA_04967at 413.732 kb on - strand, within BACOVA_04967at 413.754 kb on + strand, within BACOVA_04967at 413.789 kb on + strand, within BACOVA_04967at 413.790 kb on - strand, within BACOVA_04967at 413.882 kb on + strand, within BACOVA_04967at 413.882 kb on + strand, within BACOVA_04967at 413.920 kb on + strand, within BACOVA_04967at 413.921 kb on - strand, within BACOVA_04967at 413.947 kb on - strand, within BACOVA_04967at 414.006 kb on + strand, within BACOVA_04967at 414.075 kb on + strand, within BACOVA_04967at 414.076 kb on - strand, within BACOVA_04967at 414.121 kb on + strandat 414.122 kb on - strandat 414.130 kb on + strandat 414.130 kb on + strandat 414.131 kb on - strandat 414.133 kb on - strandat 414.197 kb on - strandat 414.243 kb on - strandat 414.243 kb on - strandat 414.307 kb on + strandat 414.308 kb on - strandat 414.334 kb on + strandat 414.335 kb on - strandat 414.339 kb on + strandat 414.354 kb on + strandat 414.366 kb on + strandat 414.376 kb on + strandat 414.377 kb on - strandat 414.386 kb on - strandat 414.422 kb on - strandat 414.422 kb on - strandat 414.425 kb on + strandat 414.516 kb on + strandat 414.516 kb on + strandat 414.517 kb on - strandat 414.517 kb on - strandat 414.635 kb on + strand, within BACOVA_04968at 414.658 kb on + strand, within BACOVA_04968at 414.659 kb on - strand, within BACOVA_04968at 414.659 kb on - strand, within BACOVA_04968at 414.721 kb on + strand, within BACOVA_04968at 414.721 kb on + strand, within BACOVA_04968at 414.810 kb on + strand, within BACOVA_04968at 414.950 kb on - strand, within BACOVA_04968at 414.970 kb on + strand, within BACOVA_04968at 414.971 kb on - strand, within BACOVA_04968at 414.993 kb on - strand, within BACOVA_04968at 414.997 kb on - strand, within BACOVA_04968at 414.997 kb on - strand, within BACOVA_04968at 415.052 kb on - strand, within BACOVA_04968at 415.052 kb on - strand, within BACOVA_04968at 415.055 kb on - strand, within BACOVA_04968at 415.080 kb on - strand, within BACOVA_04968at 415.109 kb on + strand, within BACOVA_04968at 415.113 kb on + strand, within BACOVA_04968at 415.113 kb on + strand, within BACOVA_04968at 415.113 kb on + strand, within BACOVA_04968at 415.114 kb on - strand, within BACOVA_04968at 415.114 kb on - strand, within BACOVA_04968at 415.120 kb on - strand, within BACOVA_04968at 415.250 kb on + strand, within BACOVA_04968at 415.287 kb on + strand, within BACOVA_04968at 415.287 kb on + strand, within BACOVA_04968at 415.288 kb on - strand, within BACOVA_04968at 415.291 kb on + strand, within BACOVA_04968at 415.294 kb on + strand, within BACOVA_04968at 415.297 kb on - strand, within BACOVA_04968at 415.297 kb on - strand, within BACOVA_04968at 415.313 kb on + strand, within BACOVA_04968at 415.364 kb on - strand, within BACOVA_04968at 415.383 kb on - strand, within BACOVA_04968at 415.478 kb on + strand, within BACOVA_04968at 415.479 kb on - strand, within BACOVA_04968at 415.500 kb on - strand, within BACOVA_04968at 415.512 kb on - strand, within BACOVA_04968at 415.514 kb on + strand, within BACOVA_04968at 415.545 kb on - strand, within BACOVA_04968at 415.601 kb on - strand, within BACOVA_04968at 415.609 kb on + strand, within BACOVA_04968at 415.610 kb on - strand, within BACOVA_04968at 415.610 kb on - strand, within BACOVA_04968at 415.665 kb on + strand, within BACOVA_04968at 415.676 kb on + strand, within BACOVA_04968at 415.677 kb on - strand, within BACOVA_04968at 415.687 kb on + strand, within BACOVA_04968at 415.734 kb on + strand, within BACOVA_04968at 415.740 kb on + strand, within BACOVA_04968at 415.742 kb on + strand, within BACOVA_04968at 415.745 kb on - strand, within BACOVA_04968at 415.779 kb on + strand, within BACOVA_04968at 415.780 kb on - strand, within BACOVA_04968at 415.805 kb on - strand, within BACOVA_04968at 415.816 kb on + strand, within BACOVA_04968at 415.817 kb on - strand, within BACOVA_04968at 415.817 kb on - strand, within BACOVA_04968at 415.817 kb on - strand, within BACOVA_04968at 415.853 kb on - strand, within BACOVA_04968at 415.866 kb on - strand, within BACOVA_04968at 415.866 kb on - strand, within BACOVA_04968at 415.937 kb on + strand, within BACOVA_04968at 415.962 kb on + strand, within BACOVA_04968at 415.962 kb on + strand, within BACOVA_04968at 415.981 kb on + strand, within BACOVA_04968at 416.004 kb on + strand, within BACOVA_04968at 416.007 kb on + strand, within BACOVA_04968at 416.008 kb on - strand, within BACOVA_04968at 416.018 kb on - strand, within BACOVA_04968at 416.041 kb on - strandat 416.080 kb on + strandat 416.080 kb on + strandat 416.110 kb on + strandat 416.110 kb on + strandat 416.111 kb on - strandat 416.220 kb on - strandat 416.269 kb on + strandat 416.270 kb on - strandat 416.273 kb on - strandat 416.318 kb on + strand, within BACOVA_04969at 416.349 kb on - strand, within BACOVA_04969at 416.351 kb on - strand, within BACOVA_04969at 416.360 kb on + strand, within BACOVA_04969at 416.404 kb on - strandat 416.404 kb on - strandat 416.457 kb on + strandat 416.489 kb on + strandat 416.490 kb on - strandat 416.528 kb on + strandat 416.529 kb on - strandat 416.573 kb on + strand, within BACOVA_04970at 416.633 kb on - strandat 416.816 kb on + strand, within BACOVA_04971at 416.866 kb on - strandat 416.866 kb on - strandat 416.921 kb on + strandat 416.922 kb on - strandat 416.958 kb on + strandat 416.958 kb on + strandat 417.007 kb on - strandat 417.019 kb on - strandat 417.186 kb on + strand, within BACOVA_04972at 417.193 kb on + strand, within BACOVA_04972at 417.193 kb on + strand, within BACOVA_04972

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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413,501 - BACOVA_04967 0.72 +0.5
413,515 + BACOVA_04967 0.72 -0.4
413,516 - BACOVA_04967 0.72 +0.3
413,516 - BACOVA_04967 0.72 +2.3
413,516 - BACOVA_04967 0.72 -1.9
413,516 - BACOVA_04967 0.72 -0.9
413,519 - BACOVA_04967 0.72 -1.0
413,532 - BACOVA_04967 0.73 +0.9
413,561 - BACOVA_04967 0.74 -1.1
413,581 + BACOVA_04967 0.74 -0.2
413,581 + BACOVA_04967 0.74 -1.1
413,581 + BACOVA_04967 0.74 -0.7
413,581 + BACOVA_04967 0.74 -0.1
413,582 - BACOVA_04967 0.74 -0.9
413,594 - BACOVA_04967 0.75 +1.9
413,612 + BACOVA_04967 0.75 -0.9
413,617 + BACOVA_04967 0.75 +0.5
413,617 + BACOVA_04967 0.75 -1.3
413,650 + BACOVA_04967 0.76 +0.1
413,655 + BACOVA_04967 0.76 -0.1
413,656 - BACOVA_04967 0.76 +0.9
413,656 - BACOVA_04967 0.76 -0.2
413,678 - BACOVA_04967 0.77 -0.7
413,721 - BACOVA_04967 0.78 -0.5
413,721 - BACOVA_04967 0.78 -0.1
413,723 + BACOVA_04967 0.78 +1.7
413,724 - BACOVA_04967 0.78 -1.1
413,728 + BACOVA_04967 0.79 +1.4
413,728 + BACOVA_04967 0.79 +0.9
413,732 - BACOVA_04967 0.79 +0.2
413,754 + BACOVA_04967 0.79 -1.9
413,789 + BACOVA_04967 0.80 +0.1
413,790 - BACOVA_04967 0.80 -0.8
413,882 + BACOVA_04967 0.83 -0.8
413,882 + BACOVA_04967 0.83 -1.6
413,920 + BACOVA_04967 0.84 +0.3
413,921 - BACOVA_04967 0.84 -0.5
413,947 - BACOVA_04967 0.85 -0.7
414,006 + BACOVA_04967 0.87 -0.9
414,075 + BACOVA_04967 0.89 -0.3
414,076 - BACOVA_04967 0.89 -1.3
414,121 + -1.3
414,122 - +0.5
414,130 + +0.9
414,130 + +0.3
414,131 - +1.1
414,133 - +1.7
414,197 - -0.2
414,243 - -1.0
414,243 - -1.3
414,307 + +0.0
414,308 - -2.6
414,334 + +0.6
414,335 - -0.1
414,339 + +0.7
414,354 + -0.4
414,366 + +0.1
414,376 + -1.6
414,377 - +1.5
414,386 - +1.2
414,422 - -0.3
414,422 - +0.6
414,425 + +0.3
414,516 + +0.9
414,516 + +0.5
414,517 - +1.0
414,517 - -1.5
414,635 + BACOVA_04968 0.11 +0.4
414,658 + BACOVA_04968 0.12 +4.7
414,659 - BACOVA_04968 0.13 -1.3
414,659 - BACOVA_04968 0.13 -0.8
414,721 + BACOVA_04968 0.16 +0.0
414,721 + BACOVA_04968 0.16 +0.0
414,810 + BACOVA_04968 0.21 -2.1
414,950 - BACOVA_04968 0.29 -1.7
414,970 + BACOVA_04968 0.30 +0.6
414,971 - BACOVA_04968 0.30 -1.4
414,993 - BACOVA_04968 0.32 -0.1
414,997 - BACOVA_04968 0.32 -1.1
414,997 - BACOVA_04968 0.32 +1.6
415,052 - BACOVA_04968 0.35 -1.6
415,052 - BACOVA_04968 0.35 -0.6
415,055 - BACOVA_04968 0.35 -0.7
415,080 - BACOVA_04968 0.36 +0.4
415,109 + BACOVA_04968 0.38 +0.3
415,113 + BACOVA_04968 0.38 +0.8
415,113 + BACOVA_04968 0.38 +1.1
415,113 + BACOVA_04968 0.38 +1.4
415,114 - BACOVA_04968 0.38 +0.7
415,114 - BACOVA_04968 0.38 +0.9
415,120 - BACOVA_04968 0.39 +1.0
415,250 + BACOVA_04968 0.46 +0.1
415,287 + BACOVA_04968 0.48 +0.0
415,287 + BACOVA_04968 0.48 +0.5
415,288 - BACOVA_04968 0.48 +0.7
415,291 + BACOVA_04968 0.48 -0.7
415,294 + BACOVA_04968 0.49 +1.1
415,297 - BACOVA_04968 0.49 +1.5
415,297 - BACOVA_04968 0.49 +2.7
415,313 + BACOVA_04968 0.50 -0.4
415,364 - BACOVA_04968 0.53 +0.8
415,383 - BACOVA_04968 0.54 +0.7
415,478 + BACOVA_04968 0.59 -0.1
415,479 - BACOVA_04968 0.59 -1.9
415,500 - BACOVA_04968 0.60 +0.1
415,512 - BACOVA_04968 0.61 -0.8
415,514 + BACOVA_04968 0.61 -0.4
415,545 - BACOVA_04968 0.63 -0.6
415,601 - BACOVA_04968 0.66 +0.2
415,609 + BACOVA_04968 0.66 -0.4
415,610 - BACOVA_04968 0.67 -1.3
415,610 - BACOVA_04968 0.67 -0.4
415,665 + BACOVA_04968 0.70 -1.1
415,676 + BACOVA_04968 0.70 -0.9
415,677 - BACOVA_04968 0.70 +1.5
415,687 + BACOVA_04968 0.71 -2.4
415,734 + BACOVA_04968 0.74 +0.1
415,740 + BACOVA_04968 0.74 +0.7
415,742 + BACOVA_04968 0.74 -0.2
415,745 - BACOVA_04968 0.74 -0.1
415,779 + BACOVA_04968 0.76 +0.5
415,780 - BACOVA_04968 0.76 -0.5
415,805 - BACOVA_04968 0.78 +0.5
415,816 + BACOVA_04968 0.78 +0.5
415,817 - BACOVA_04968 0.78 +1.7
415,817 - BACOVA_04968 0.78 -2.0
415,817 - BACOVA_04968 0.78 -0.7
415,853 - BACOVA_04968 0.80 +0.1
415,866 - BACOVA_04968 0.81 -0.2
415,866 - BACOVA_04968 0.81 +0.6
415,937 + BACOVA_04968 0.85 -0.3
415,962 + BACOVA_04968 0.87 +0.7
415,962 + BACOVA_04968 0.87 -0.1
415,981 + BACOVA_04968 0.88 -0.5
416,004 + BACOVA_04968 0.89 +0.2
416,007 + BACOVA_04968 0.89 -0.1
416,008 - BACOVA_04968 0.89 +1.6
416,018 - BACOVA_04968 0.90 -0.8
416,041 - -2.0
416,080 + -0.5
416,080 + +0.7
416,110 + -0.1
416,110 + +0.9
416,111 - -0.6
416,220 - -0.9
416,269 + -0.4
416,270 - +1.4
416,273 - +0.5
416,318 + BACOVA_04969 0.16 -0.8
416,349 - BACOVA_04969 0.46 -0.6
416,351 - BACOVA_04969 0.48 +0.3
416,360 + BACOVA_04969 0.56 +0.4
416,404 - +1.0
416,404 - +0.7
416,457 + -0.9
416,489 + -0.1
416,490 - +1.2
416,528 + -0.5
416,529 - -0.3
416,573 + BACOVA_04970 0.35 -0.5
416,633 - -0.8
416,816 + BACOVA_04971 0.80 -2.9
416,866 - +1.1
416,866 - +0.9
416,921 + -0.4
416,922 - -0.1
416,958 + +0.5
416,958 + +0.2
417,007 - -1.8
417,019 - -0.3
417,186 + BACOVA_04972 0.17 +0.1
417,193 + BACOVA_04972 0.17 -0.5
417,193 + BACOVA_04972 0.17 +0.5

Or see this region's nucleotide sequence