Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04767 and BACOVA_04768 overlap by 4 nucleotides BACOVA_04768 and BACOVA_04769 are separated by 20 nucleotides BACOVA_04769 and BACOVA_04770 are separated by 11 nucleotides
BACOVA_04767: BACOVA_04767 - hypothetical protein, at 121,550 to 122,074
_04767
BACOVA_04768: BACOVA_04768 - conjugative transposon TraN protein, at 122,071 to 122,922
_04768
BACOVA_04769: BACOVA_04769 - DNA (cytosine-5-)-methyltransferase, at 122,943 to 123,746
_04769
BACOVA_04770: BACOVA_04770 - conjugative transposon TraM protein, at 123,758 to 124,933
_04770
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 122.304 kb on + strand, within BACOVA_04768 at 122.420 kb on + strand, within BACOVA_04768 at 122.424 kb on + strand, within BACOVA_04768 at 122.425 kb on - strand, within BACOVA_04768 at 122.552 kb on + strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.628 kb on - strand, within BACOVA_04768 at 122.760 kb on + strand, within BACOVA_04768 at 122.840 kb on + strand at 122.840 kb on + strand at 122.840 kb on + strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.904 kb on + strand at 122.905 kb on - strand at 122.905 kb on - strand at 122.909 kb on - strand at 123.157 kb on + strand, within BACOVA_04769 at 123.162 kb on + strand, within BACOVA_04769 at 123.193 kb on + strand, within BACOVA_04769 at 123.370 kb on + strand, within BACOVA_04769 at 123.372 kb on + strand, within BACOVA_04769 at 123.710 kb on + strand at 123.719 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.724 kb on + strand at 123.725 kb on - strand at 123.726 kb on + strand at 123.726 kb on + strand at 123.726 kb on + strand at 123.812 kb on + strand at 123.812 kb on + strand at 123.812 kb on + strand at 123.829 kb on + strand at 123.996 kb on + strand, within BACOVA_04770 at 123.996 kb on + strand, within BACOVA_04770 at 124.119 kb on + strand, within BACOVA_04770 at 124.275 kb on + strand, within BACOVA_04770 at 124.292 kb on + strand, within BACOVA_04770 at 124.436 kb on + strand, within BACOVA_04770 at 124.437 kb on - strand, within BACOVA_04770 at 124.599 kb on + strand, within BACOVA_04770 at 124.599 kb on + strand, within BACOVA_04770 at 124.600 kb on - strand, within BACOVA_04770 at 124.634 kb on + strand, within BACOVA_04770 at 124.634 kb on + strand, within BACOVA_04770 at 124.666 kb on + strand, within BACOVA_04770 at 124.720 kb on + strand, within BACOVA_04770
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 122,304 + BACOVA_04768 0.27 +2.5 122,420 + BACOVA_04768 0.41 +1.2 122,424 + BACOVA_04768 0.41 +0.9 122,425 - BACOVA_04768 0.42 +0.8 122,552 + BACOVA_04768 0.56 -0.6 122,616 - BACOVA_04768 0.64 +2.6 122,616 - BACOVA_04768 0.64 +0.2 122,627 + BACOVA_04768 0.65 +0.6 122,627 + BACOVA_04768 0.65 +1.7 122,628 - BACOVA_04768 0.65 +1.5 122,760 + BACOVA_04768 0.81 -0.4 122,840 + -0.0 122,840 + +0.3 122,840 + -2.3 122,841 - +0.6 122,841 - +1.6 122,841 - +1.0 122,841 - -0.5 122,904 + -0.5 122,905 - -0.8 122,905 - +0.5 122,909 - +0.6 123,157 + BACOVA_04769 0.27 +0.5 123,162 + BACOVA_04769 0.27 -1.4 123,193 + BACOVA_04769 0.31 -0.9 123,370 + BACOVA_04769 0.53 -0.4 123,372 + BACOVA_04769 0.53 -1.5 123,710 + +2.3 123,719 + -1.6 123,722 + -1.6 123,722 + -0.9 123,722 + +1.9 123,722 + -0.6 123,724 + +0.0 123,725 - +1.5 123,726 + -0.8 123,726 + +2.0 123,726 + -2.2 123,812 + +1.7 123,812 + +1.1 123,812 + -0.9 123,829 + +0.4 123,996 + BACOVA_04770 0.20 -1.2 123,996 + BACOVA_04770 0.20 +0.5 124,119 + BACOVA_04770 0.31 -1.2 124,275 + BACOVA_04770 0.44 -0.5 124,292 + BACOVA_04770 0.45 -0.4 124,436 + BACOVA_04770 0.58 -1.7 124,437 - BACOVA_04770 0.58 +1.2 124,599 + BACOVA_04770 0.72 -0.8 124,599 + BACOVA_04770 0.72 +1.2 124,600 - BACOVA_04770 0.72 -0.2 124,634 + BACOVA_04770 0.74 -1.4 124,634 + BACOVA_04770 0.74 -0.6 124,666 + BACOVA_04770 0.77 -0.3 124,720 + BACOVA_04770 0.82 -2.1
Or see this region's nucleotide sequence