Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04767

Experiment: D-Arabinose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04765 and BACOVA_04766 are separated by 1 nucleotidesBACOVA_04766 and BACOVA_04767 are separated by 26 nucleotidesBACOVA_04767 and BACOVA_04768 overlap by 4 nucleotidesBACOVA_04768 and BACOVA_04769 are separated by 20 nucleotides BACOVA_04765: BACOVA_04765 - hypothetical protein, at 120,119 to 120,865 _04765 BACOVA_04766: BACOVA_04766 - hypothetical protein, at 120,867 to 121,523 _04766 BACOVA_04767: BACOVA_04767 - hypothetical protein, at 121,550 to 122,074 _04767 BACOVA_04768: BACOVA_04768 - conjugative transposon TraN protein, at 122,071 to 122,922 _04768 BACOVA_04769: BACOVA_04769 - DNA (cytosine-5-)-methyltransferase, at 122,943 to 123,746 _04769 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 120.576 kb on + strand, within BACOVA_04765at 120.680 kb on - strand, within BACOVA_04765at 120.793 kb on - strandat 120.798 kb on - strandat 120.824 kb on + strandat 120.829 kb on + strandat 120.841 kb on + strandat 120.841 kb on + strandat 120.842 kb on - strandat 120.846 kb on - strandat 120.846 kb on - strandat 120.885 kb on + strandat 120.886 kb on - strandat 120.914 kb on - strandat 121.012 kb on + strand, within BACOVA_04766at 121.012 kb on + strand, within BACOVA_04766at 121.013 kb on - strand, within BACOVA_04766at 121.013 kb on - strand, within BACOVA_04766at 121.081 kb on + strand, within BACOVA_04766at 121.081 kb on + strand, within BACOVA_04766at 121.112 kb on + strand, within BACOVA_04766at 121.114 kb on + strand, within BACOVA_04766at 121.114 kb on + strand, within BACOVA_04766at 121.186 kb on + strand, within BACOVA_04766at 121.378 kb on + strand, within BACOVA_04766at 121.378 kb on + strand, within BACOVA_04766at 121.388 kb on - strand, within BACOVA_04766at 121.418 kb on + strand, within BACOVA_04766at 121.418 kb on + strand, within BACOVA_04766at 121.419 kb on - strand, within BACOVA_04766at 121.419 kb on - strand, within BACOVA_04766at 121.446 kb on + strand, within BACOVA_04766at 121.518 kb on + strandat 121.518 kb on + strandat 121.519 kb on - strandat 121.610 kb on + strand, within BACOVA_04767at 121.610 kb on + strand, within BACOVA_04767at 121.782 kb on + strand, within BACOVA_04767at 121.837 kb on + strand, within BACOVA_04767at 121.905 kb on + strand, within BACOVA_04767at 121.923 kb on + strand, within BACOVA_04767at 122.304 kb on + strand, within BACOVA_04768at 122.420 kb on + strand, within BACOVA_04768at 122.424 kb on + strand, within BACOVA_04768at 122.425 kb on - strand, within BACOVA_04768at 122.552 kb on + strand, within BACOVA_04768at 122.616 kb on - strand, within BACOVA_04768at 122.616 kb on - strand, within BACOVA_04768at 122.627 kb on + strand, within BACOVA_04768at 122.627 kb on + strand, within BACOVA_04768at 122.628 kb on - strand, within BACOVA_04768at 122.760 kb on + strand, within BACOVA_04768at 122.840 kb on + strandat 122.840 kb on + strandat 122.840 kb on + strandat 122.841 kb on - strandat 122.841 kb on - strandat 122.841 kb on - strandat 122.841 kb on - strandat 122.904 kb on + strandat 122.905 kb on - strandat 122.905 kb on - strandat 122.909 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
remove
120,576 + BACOVA_04765 0.61 -1.1
120,680 - BACOVA_04765 0.75 +0.4
120,793 - +1.2
120,798 - +1.5
120,824 + -0.8
120,829 + -0.6
120,841 + -0.7
120,841 + -1.0
120,842 - +2.4
120,846 - +4.2
120,846 - -0.2
120,885 + -1.1
120,886 - +0.6
120,914 - +1.2
121,012 + BACOVA_04766 0.22 -0.1
121,012 + BACOVA_04766 0.22 +1.5
121,013 - BACOVA_04766 0.22 +1.2
121,013 - BACOVA_04766 0.22 +1.8
121,081 + BACOVA_04766 0.33 +1.4
121,081 + BACOVA_04766 0.33 -2.6
121,112 + BACOVA_04766 0.37 -0.7
121,114 + BACOVA_04766 0.38 +0.0
121,114 + BACOVA_04766 0.38 -0.7
121,186 + BACOVA_04766 0.49 -0.8
121,378 + BACOVA_04766 0.78 -1.4
121,378 + BACOVA_04766 0.78 -1.3
121,388 - BACOVA_04766 0.79 -0.3
121,418 + BACOVA_04766 0.84 -0.0
121,418 + BACOVA_04766 0.84 -0.2
121,419 - BACOVA_04766 0.84 +0.8
121,419 - BACOVA_04766 0.84 +1.0
121,446 + BACOVA_04766 0.88 -0.5
121,518 + +1.2
121,518 + -2.1
121,519 - -0.5
121,610 + BACOVA_04767 0.11 +0.4
121,610 + BACOVA_04767 0.11 +1.8
121,782 + BACOVA_04767 0.44 -0.3
121,837 + BACOVA_04767 0.55 +1.0
121,905 + BACOVA_04767 0.68 -1.1
121,923 + BACOVA_04767 0.71 -1.4
122,304 + BACOVA_04768 0.27 +2.5
122,420 + BACOVA_04768 0.41 +1.2
122,424 + BACOVA_04768 0.41 +0.9
122,425 - BACOVA_04768 0.42 +0.8
122,552 + BACOVA_04768 0.56 -0.6
122,616 - BACOVA_04768 0.64 +2.6
122,616 - BACOVA_04768 0.64 +0.2
122,627 + BACOVA_04768 0.65 +0.6
122,627 + BACOVA_04768 0.65 +1.7
122,628 - BACOVA_04768 0.65 +1.5
122,760 + BACOVA_04768 0.81 -0.4
122,840 + -0.0
122,840 + +0.3
122,840 + -2.3
122,841 - +0.6
122,841 - +1.6
122,841 - +1.0
122,841 - -0.5
122,904 + -0.5
122,905 - -0.8
122,905 - +0.5
122,909 - +0.6

Or see this region's nucleotide sequence