Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04631

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04629 and BACOVA_04630 are separated by 26 nucleotidesBACOVA_04630 and BACOVA_04631 are separated by 83 nucleotidesBACOVA_04631 and BACOVA_04632 are separated by 82 nucleotidesBACOVA_04632 and BACOVA_04633 are separated by 85 nucleotidesBACOVA_04633 and BACOVA_04634 are separated by 26 nucleotides BACOVA_04629: BACOVA_04629 - 3-dehydroquinate synthase, at 26,320 to 27,381 _04629 BACOVA_04630: BACOVA_04630 - hypothetical protein, at 27,408 to 27,866 _04630 BACOVA_04631: BACOVA_04631 - hypothetical protein, at 27,950 to 29,929 _04631 BACOVA_04632: BACOVA_04632 - hypothetical protein, at 30,012 to 30,284 _04632 BACOVA_04633: BACOVA_04633 - hypothetical protein, at 30,370 to 30,621 _04633 BACOVA_04634: BACOVA_04634 - IS66 family element, transposase, at 30,648 to 32,156 _04634 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 27.152 kb on - strand, within BACOVA_04629at 27.416 kb on - strandat 27.416 kb on - strandat 27.434 kb on + strandat 27.435 kb on - strandat 27.449 kb on - strandat 27.449 kb on - strandat 27.475 kb on + strand, within BACOVA_04630at 27.476 kb on - strand, within BACOVA_04630at 27.483 kb on + strand, within BACOVA_04630at 27.483 kb on + strand, within BACOVA_04630at 27.483 kb on + strand, within BACOVA_04630at 27.483 kb on + strand, within BACOVA_04630at 27.501 kb on + strand, within BACOVA_04630at 27.518 kb on - strand, within BACOVA_04630at 27.557 kb on - strand, within BACOVA_04630at 27.569 kb on + strand, within BACOVA_04630at 27.570 kb on - strand, within BACOVA_04630at 27.583 kb on - strand, within BACOVA_04630at 27.584 kb on + strand, within BACOVA_04630at 27.644 kb on + strand, within BACOVA_04630at 27.731 kb on + strand, within BACOVA_04630at 27.731 kb on - strand, within BACOVA_04630at 27.732 kb on - strand, within BACOVA_04630at 27.732 kb on - strand, within BACOVA_04630at 27.746 kb on + strand, within BACOVA_04630at 27.746 kb on + strand, within BACOVA_04630at 27.747 kb on - strand, within BACOVA_04630at 27.763 kb on + strand, within BACOVA_04630at 27.764 kb on - strand, within BACOVA_04630at 27.773 kb on + strand, within BACOVA_04630at 27.773 kb on + strand, within BACOVA_04630at 27.919 kb on - strandat 27.927 kb on + strandat 27.927 kb on + strandat 27.930 kb on + strandat 27.930 kb on + strandat 27.930 kb on + strandat 27.931 kb on - strandat 27.987 kb on + strandat 28.016 kb on - strandat 28.022 kb on - strandat 28.057 kb on + strandat 28.058 kb on - strandat 28.079 kb on - strandat 28.093 kb on - strandat 28.099 kb on - strandat 28.105 kb on + strandat 28.112 kb on + strandat 28.125 kb on + strandat 28.165 kb on - strand, within BACOVA_04631at 28.165 kb on - strand, within BACOVA_04631at 28.165 kb on - strand, within BACOVA_04631at 28.196 kb on + strand, within BACOVA_04631at 28.233 kb on + strand, within BACOVA_04631at 28.233 kb on + strand, within BACOVA_04631at 28.234 kb on - strand, within BACOVA_04631at 28.234 kb on - strand, within BACOVA_04631at 28.234 kb on - strand, within BACOVA_04631at 28.270 kb on + strand, within BACOVA_04631at 28.348 kb on + strand, within BACOVA_04631at 28.360 kb on + strand, within BACOVA_04631at 28.378 kb on + strand, within BACOVA_04631at 28.434 kb on + strand, within BACOVA_04631at 28.465 kb on + strand, within BACOVA_04631at 28.473 kb on + strand, within BACOVA_04631at 28.474 kb on - strand, within BACOVA_04631at 28.484 kb on - strand, within BACOVA_04631at 28.495 kb on + strand, within BACOVA_04631at 28.576 kb on + strand, within BACOVA_04631at 28.576 kb on + strand, within BACOVA_04631at 28.609 kb on - strand, within BACOVA_04631at 28.658 kb on - strand, within BACOVA_04631at 28.658 kb on - strand, within BACOVA_04631at 28.679 kb on - strand, within BACOVA_04631at 28.750 kb on + strand, within BACOVA_04631at 28.780 kb on + strand, within BACOVA_04631at 28.780 kb on + strand, within BACOVA_04631at 28.780 kb on + strand, within BACOVA_04631at 28.781 kb on - strand, within BACOVA_04631at 28.781 kb on - strand, within BACOVA_04631at 28.871 kb on - strand, within BACOVA_04631at 28.922 kb on - strand, within BACOVA_04631at 28.948 kb on + strand, within BACOVA_04631at 28.949 kb on - strand, within BACOVA_04631at 29.005 kb on + strand, within BACOVA_04631at 29.005 kb on + strand, within BACOVA_04631at 29.005 kb on + strand, within BACOVA_04631at 29.006 kb on - strand, within BACOVA_04631at 29.017 kb on + strand, within BACOVA_04631at 29.077 kb on + strand, within BACOVA_04631at 29.077 kb on + strand, within BACOVA_04631at 29.116 kb on + strand, within BACOVA_04631at 29.116 kb on + strand, within BACOVA_04631at 29.116 kb on + strand, within BACOVA_04631at 29.116 kb on + strand, within BACOVA_04631at 29.117 kb on - strand, within BACOVA_04631at 29.120 kb on + strand, within BACOVA_04631at 29.120 kb on + strand, within BACOVA_04631at 29.120 kb on + strand, within BACOVA_04631at 29.121 kb on - strand, within BACOVA_04631at 29.121 kb on - strand, within BACOVA_04631at 29.121 kb on - strand, within BACOVA_04631at 29.234 kb on - strand, within BACOVA_04631at 29.254 kb on + strand, within BACOVA_04631at 29.254 kb on + strand, within BACOVA_04631at 29.255 kb on - strand, within BACOVA_04631at 29.255 kb on - strand, within BACOVA_04631at 29.354 kb on - strand, within BACOVA_04631at 29.354 kb on - strand, within BACOVA_04631at 29.359 kb on + strand, within BACOVA_04631at 29.359 kb on + strand, within BACOVA_04631at 29.359 kb on + strand, within BACOVA_04631at 29.360 kb on - strand, within BACOVA_04631at 29.364 kb on - strand, within BACOVA_04631at 29.364 kb on - strand, within BACOVA_04631at 29.408 kb on + strand, within BACOVA_04631at 29.419 kb on + strand, within BACOVA_04631at 29.420 kb on - strand, within BACOVA_04631at 29.453 kb on + strand, within BACOVA_04631at 29.456 kb on - strand, within BACOVA_04631at 29.458 kb on + strand, within BACOVA_04631at 29.483 kb on + strand, within BACOVA_04631at 29.484 kb on - strand, within BACOVA_04631at 29.485 kb on + strand, within BACOVA_04631at 29.501 kb on + strand, within BACOVA_04631at 29.524 kb on + strand, within BACOVA_04631at 29.524 kb on + strand, within BACOVA_04631at 29.532 kb on + strand, within BACOVA_04631at 29.558 kb on - strand, within BACOVA_04631at 29.561 kb on + strand, within BACOVA_04631at 29.561 kb on + strand, within BACOVA_04631at 29.581 kb on + strand, within BACOVA_04631at 29.581 kb on + strand, within BACOVA_04631at 29.582 kb on - strand, within BACOVA_04631at 29.582 kb on - strand, within BACOVA_04631at 29.586 kb on - strand, within BACOVA_04631at 29.586 kb on - strand, within BACOVA_04631at 29.586 kb on - strand, within BACOVA_04631at 29.586 kb on - strand, within BACOVA_04631at 29.652 kb on + strand, within BACOVA_04631at 29.652 kb on + strand, within BACOVA_04631at 29.657 kb on + strand, within BACOVA_04631at 29.657 kb on + strand, within BACOVA_04631at 29.668 kb on + strand, within BACOVA_04631at 29.674 kb on + strand, within BACOVA_04631at 29.690 kb on + strand, within BACOVA_04631at 29.702 kb on - strand, within BACOVA_04631at 29.711 kb on - strand, within BACOVA_04631at 29.720 kb on - strand, within BACOVA_04631at 29.722 kb on + strand, within BACOVA_04631at 29.755 kb on + strandat 29.755 kb on + strandat 29.756 kb on - strandat 29.756 kb on - strandat 29.806 kb on - strandat 29.806 kb on - strandat 29.806 kb on - strandat 29.806 kb on - strandat 29.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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27,152 - BACOVA_04629 0.78 +1.8
27,416 - -1.9
27,416 - -1.8
27,434 + +1.8
27,435 - -1.1
27,449 - -0.5
27,449 - -1.1
27,475 + BACOVA_04630 0.15 -0.7
27,476 - BACOVA_04630 0.15 -1.6
27,483 + BACOVA_04630 0.16 -2.3
27,483 + BACOVA_04630 0.16 -1.9
27,483 + BACOVA_04630 0.16 -0.9
27,483 + BACOVA_04630 0.16 +1.0
27,501 + BACOVA_04630 0.20 -0.7
27,518 - BACOVA_04630 0.24 -0.6
27,557 - BACOVA_04630 0.32 +0.0
27,569 + BACOVA_04630 0.35 +0.2
27,570 - BACOVA_04630 0.35 -1.2
27,583 - BACOVA_04630 0.38 -1.0
27,584 + BACOVA_04630 0.38 +0.3
27,644 + BACOVA_04630 0.51 -0.3
27,731 + BACOVA_04630 0.70 -1.8
27,731 - BACOVA_04630 0.70 +0.5
27,732 - BACOVA_04630 0.71 +0.3
27,732 - BACOVA_04630 0.71 +1.2
27,746 + BACOVA_04630 0.74 -0.4
27,746 + BACOVA_04630 0.74 +1.1
27,747 - BACOVA_04630 0.74 -1.2
27,763 + BACOVA_04630 0.77 +2.8
27,764 - BACOVA_04630 0.78 +0.1
27,773 + BACOVA_04630 0.80 -0.4
27,773 + BACOVA_04630 0.80 -1.8
27,919 - -0.7
27,927 + +1.8
27,927 + +0.9
27,930 + +2.2
27,930 + -0.7
27,930 + +3.1
27,931 - +0.3
27,987 + -1.1
28,016 - -0.2
28,022 - +0.5
28,057 + -1.2
28,058 - -0.5
28,079 - +0.6
28,093 - +0.5
28,099 - -1.8
28,105 + -0.1
28,112 + -1.4
28,125 + +0.6
28,165 - BACOVA_04631 0.11 +0.1
28,165 - BACOVA_04631 0.11 +0.5
28,165 - BACOVA_04631 0.11 +0.9
28,196 + BACOVA_04631 0.12 +0.3
28,233 + BACOVA_04631 0.14 +1.5
28,233 + BACOVA_04631 0.14 +0.5
28,234 - BACOVA_04631 0.14 -0.7
28,234 - BACOVA_04631 0.14 -0.1
28,234 - BACOVA_04631 0.14 -0.3
28,270 + BACOVA_04631 0.16 -1.3
28,348 + BACOVA_04631 0.20 -0.7
28,360 + BACOVA_04631 0.21 -1.8
28,378 + BACOVA_04631 0.22 +0.3
28,434 + BACOVA_04631 0.24 -0.7
28,465 + BACOVA_04631 0.26 +0.4
28,473 + BACOVA_04631 0.26 -0.1
28,474 - BACOVA_04631 0.26 +1.8
28,484 - BACOVA_04631 0.27 -2.1
28,495 + BACOVA_04631 0.28 -1.7
28,576 + BACOVA_04631 0.32 -2.8
28,576 + BACOVA_04631 0.32 -0.2
28,609 - BACOVA_04631 0.33 -1.5
28,658 - BACOVA_04631 0.36 -0.2
28,658 - BACOVA_04631 0.36 -0.5
28,679 - BACOVA_04631 0.37 -0.7
28,750 + BACOVA_04631 0.40 +0.0
28,780 + BACOVA_04631 0.42 -0.1
28,780 + BACOVA_04631 0.42 +0.3
28,780 + BACOVA_04631 0.42 +1.7
28,781 - BACOVA_04631 0.42 -1.9
28,781 - BACOVA_04631 0.42 -0.2
28,871 - BACOVA_04631 0.47 -1.8
28,922 - BACOVA_04631 0.49 +1.5
28,948 + BACOVA_04631 0.50 +0.2
28,949 - BACOVA_04631 0.50 -1.3
29,005 + BACOVA_04631 0.53 +0.1
29,005 + BACOVA_04631 0.53 +2.8
29,005 + BACOVA_04631 0.53 +0.3
29,006 - BACOVA_04631 0.53 -1.0
29,017 + BACOVA_04631 0.54 +7.1
29,077 + BACOVA_04631 0.57 +0.6
29,077 + BACOVA_04631 0.57 +1.7
29,116 + BACOVA_04631 0.59 +0.2
29,116 + BACOVA_04631 0.59 -0.3
29,116 + BACOVA_04631 0.59 +0.5
29,116 + BACOVA_04631 0.59 -1.2
29,117 - BACOVA_04631 0.59 -0.7
29,120 + BACOVA_04631 0.59 -0.9
29,120 + BACOVA_04631 0.59 +0.2
29,120 + BACOVA_04631 0.59 -0.7
29,121 - BACOVA_04631 0.59 +0.3
29,121 - BACOVA_04631 0.59 -0.6
29,121 - BACOVA_04631 0.59 +0.9
29,234 - BACOVA_04631 0.65 +1.6
29,254 + BACOVA_04631 0.66 +0.1
29,254 + BACOVA_04631 0.66 -0.7
29,255 - BACOVA_04631 0.66 -0.2
29,255 - BACOVA_04631 0.66 -0.6
29,354 - BACOVA_04631 0.71 -0.4
29,354 - BACOVA_04631 0.71 +0.2
29,359 + BACOVA_04631 0.71 +1.6
29,359 + BACOVA_04631 0.71 +0.2
29,359 + BACOVA_04631 0.71 -1.4
29,360 - BACOVA_04631 0.71 -0.6
29,364 - BACOVA_04631 0.71 +0.3
29,364 - BACOVA_04631 0.71 -0.4
29,408 + BACOVA_04631 0.74 -0.7
29,419 + BACOVA_04631 0.74 -0.2
29,420 - BACOVA_04631 0.74 -0.2
29,453 + BACOVA_04631 0.76 -0.2
29,456 - BACOVA_04631 0.76 +1.9
29,458 + BACOVA_04631 0.76 -0.2
29,483 + BACOVA_04631 0.77 -0.4
29,484 - BACOVA_04631 0.77 +0.8
29,485 + BACOVA_04631 0.78 +0.8
29,501 + BACOVA_04631 0.78 +1.7
29,524 + BACOVA_04631 0.79 +2.2
29,524 + BACOVA_04631 0.79 +0.5
29,532 + BACOVA_04631 0.80 +2.8
29,558 - BACOVA_04631 0.81 +1.2
29,561 + BACOVA_04631 0.81 +0.3
29,561 + BACOVA_04631 0.81 -0.0
29,581 + BACOVA_04631 0.82 -0.3
29,581 + BACOVA_04631 0.82 -0.4
29,582 - BACOVA_04631 0.82 +3.9
29,582 - BACOVA_04631 0.82 -0.5
29,586 - BACOVA_04631 0.83 -0.4
29,586 - BACOVA_04631 0.83 +0.3
29,586 - BACOVA_04631 0.83 +0.5
29,586 - BACOVA_04631 0.83 +0.5
29,652 + BACOVA_04631 0.86 -1.0
29,652 + BACOVA_04631 0.86 -1.0
29,657 + BACOVA_04631 0.86 -1.2
29,657 + BACOVA_04631 0.86 -0.5
29,668 + BACOVA_04631 0.87 +1.0
29,674 + BACOVA_04631 0.87 +0.1
29,690 + BACOVA_04631 0.88 -0.0
29,702 - BACOVA_04631 0.88 -0.6
29,711 - BACOVA_04631 0.89 -0.1
29,720 - BACOVA_04631 0.89 +1.1
29,722 + BACOVA_04631 0.89 +0.3
29,755 + -0.1
29,755 + +0.9
29,756 - -0.3
29,756 - -0.2
29,806 - +1.0
29,806 - -0.9
29,806 - -0.7
29,806 - +0.6
29,824 - -0.5

Or see this region's nucleotide sequence