Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04512

Experiment: D-Arabinose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04510 and BACOVA_04511 are separated by 184 nucleotidesBACOVA_04511 and BACOVA_04512 are separated by 105 nucleotidesBACOVA_04512 and BACOVA_04513 overlap by 20 nucleotides BACOVA_04510: BACOVA_04510 - transporter, CPA2 family, at 448,742 to 450,964 _04510 BACOVA_04511: BACOVA_04511 - hypothetical protein, at 451,149 to 451,676 _04511 BACOVA_04512: BACOVA_04512 - hypothetical protein, at 451,782 to 452,111 _04512 BACOVA_04513: BACOVA_04513 - kelch repeat protein, at 452,092 to 453,150 _04513 Position (kb) 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 450.797 kb on + strandat 450.799 kb on + strandat 450.799 kb on + strandat 450.815 kb on - strandat 450.833 kb on + strandat 450.834 kb on - strandat 450.852 kb on - strandat 450.887 kb on - strandat 450.894 kb on + strandat 450.917 kb on + strandat 450.918 kb on - strandat 450.926 kb on + strandat 450.927 kb on - strandat 450.939 kb on + strandat 450.972 kb on - strandat 450.994 kb on + strandat 451.082 kb on - strandat 451.098 kb on - strandat 451.156 kb on + strandat 451.156 kb on + strandat 451.296 kb on - strand, within BACOVA_04511at 451.314 kb on - strand, within BACOVA_04511at 451.319 kb on + strand, within BACOVA_04511at 451.319 kb on + strand, within BACOVA_04511at 451.320 kb on - strand, within BACOVA_04511at 451.348 kb on - strand, within BACOVA_04511at 451.353 kb on + strand, within BACOVA_04511at 451.353 kb on + strand, within BACOVA_04511at 451.358 kb on + strand, within BACOVA_04511at 451.360 kb on + strand, within BACOVA_04511at 451.361 kb on - strand, within BACOVA_04511at 451.381 kb on + strand, within BACOVA_04511at 451.381 kb on + strand, within BACOVA_04511at 451.381 kb on + strand, within BACOVA_04511at 451.382 kb on - strand, within BACOVA_04511at 451.394 kb on + strand, within BACOVA_04511at 451.395 kb on - strand, within BACOVA_04511at 451.432 kb on + strand, within BACOVA_04511at 451.432 kb on + strand, within BACOVA_04511at 451.433 kb on - strand, within BACOVA_04511at 451.433 kb on - strand, within BACOVA_04511at 451.439 kb on + strand, within BACOVA_04511at 451.439 kb on + strand, within BACOVA_04511at 451.439 kb on + strand, within BACOVA_04511at 451.440 kb on - strand, within BACOVA_04511at 451.440 kb on - strand, within BACOVA_04511at 451.442 kb on + strand, within BACOVA_04511at 451.443 kb on - strand, within BACOVA_04511at 451.522 kb on - strand, within BACOVA_04511at 451.617 kb on + strand, within BACOVA_04511at 451.642 kb on - strandat 451.642 kb on - strandat 451.645 kb on + strandat 451.685 kb on + strandat 451.685 kb on + strandat 451.693 kb on + strandat 451.709 kb on - strandat 451.751 kb on - strandat 451.772 kb on + strandat 451.772 kb on + strandat 451.773 kb on - strandat 451.787 kb on - strandat 451.821 kb on + strand, within BACOVA_04512at 451.860 kb on + strand, within BACOVA_04512at 451.926 kb on - strand, within BACOVA_04512at 451.942 kb on - strand, within BACOVA_04512at 451.942 kb on - strand, within BACOVA_04512at 452.032 kb on + strand, within BACOVA_04512at 452.033 kb on - strand, within BACOVA_04512at 452.038 kb on + strand, within BACOVA_04512at 452.038 kb on + strand, within BACOVA_04512at 452.039 kb on - strand, within BACOVA_04512at 452.039 kb on - strand, within BACOVA_04512at 452.039 kb on - strand, within BACOVA_04512at 452.076 kb on - strand, within BACOVA_04512at 452.078 kb on + strand, within BACOVA_04512at 452.079 kb on - strandat 452.079 kb on - strandat 452.105 kb on + strandat 452.106 kb on - strandat 452.130 kb on + strandat 452.130 kb on + strandat 452.145 kb on - strandat 452.145 kb on - strandat 452.164 kb on - strandat 452.167 kb on + strandat 452.169 kb on + strandat 452.215 kb on - strand, within BACOVA_04513at 452.270 kb on + strand, within BACOVA_04513at 452.280 kb on - strand, within BACOVA_04513at 452.292 kb on - strand, within BACOVA_04513at 452.292 kb on - strand, within BACOVA_04513at 452.296 kb on - strand, within BACOVA_04513at 452.296 kb on - strand, within BACOVA_04513at 452.358 kb on - strand, within BACOVA_04513at 452.370 kb on + strand, within BACOVA_04513at 452.391 kb on - strand, within BACOVA_04513at 452.406 kb on + strand, within BACOVA_04513at 452.504 kb on + strand, within BACOVA_04513at 452.505 kb on - strand, within BACOVA_04513at 452.505 kb on - strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.586 kb on + strand, within BACOVA_04513at 452.586 kb on + strand, within BACOVA_04513at 452.628 kb on - strand, within BACOVA_04513at 452.640 kb on - strand, within BACOVA_04513at 452.640 kb on - strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.688 kb on - strand, within BACOVA_04513at 452.688 kb on - strand, within BACOVA_04513at 452.688 kb on - strand, within BACOVA_04513at 452.703 kb on - strand, within BACOVA_04513at 452.703 kb on - strand, within BACOVA_04513at 452.703 kb on - strand, within BACOVA_04513at 452.706 kb on + strand, within BACOVA_04513at 452.706 kb on + strand, within BACOVA_04513at 452.706 kb on + strand, within BACOVA_04513at 452.771 kb on + strand, within BACOVA_04513at 452.826 kb on + strand, within BACOVA_04513at 452.827 kb on - strand, within BACOVA_04513at 452.827 kb on - strand, within BACOVA_04513at 452.828 kb on + strand, within BACOVA_04513at 452.843 kb on - strand, within BACOVA_04513at 452.843 kb on - strand, within BACOVA_04513at 452.843 kb on - strand, within BACOVA_04513at 452.856 kb on + strand, within BACOVA_04513at 452.895 kb on + strand, within BACOVA_04513at 452.896 kb on - strand, within BACOVA_04513at 452.896 kb on - strand, within BACOVA_04513at 452.984 kb on + strand, within BACOVA_04513at 452.985 kb on - strand, within BACOVA_04513at 452.989 kb on + strand, within BACOVA_04513at 452.990 kb on - strand, within BACOVA_04513at 453.069 kb on + strandat 453.072 kb on - strandat 453.075 kb on - strandat 453.087 kb on + strandat 453.087 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
remove
450,797 + +0.1
450,799 + -1.1
450,799 + -0.5
450,815 - -1.1
450,833 + -1.9
450,834 - +0.0
450,852 - -0.9
450,887 - -0.3
450,894 + +1.4
450,917 + -1.3
450,918 - -2.3
450,926 + +1.0
450,927 - -0.1
450,939 + -2.5
450,972 - -0.3
450,994 + -1.9
451,082 - +0.9
451,098 - -0.5
451,156 + +0.1
451,156 + -1.1
451,296 - BACOVA_04511 0.28 -0.9
451,314 - BACOVA_04511 0.31 +0.0
451,319 + BACOVA_04511 0.32 -0.3
451,319 + BACOVA_04511 0.32 +1.9
451,320 - BACOVA_04511 0.32 -0.9
451,348 - BACOVA_04511 0.38 -0.6
451,353 + BACOVA_04511 0.39 +0.1
451,353 + BACOVA_04511 0.39 +0.2
451,358 + BACOVA_04511 0.40 +0.0
451,360 + BACOVA_04511 0.40 -1.5
451,361 - BACOVA_04511 0.40 -1.3
451,381 + BACOVA_04511 0.44 -1.3
451,381 + BACOVA_04511 0.44 +0.1
451,381 + BACOVA_04511 0.44 -1.3
451,382 - BACOVA_04511 0.44 -0.8
451,394 + BACOVA_04511 0.46 -1.1
451,395 - BACOVA_04511 0.47 -0.6
451,432 + BACOVA_04511 0.54 +0.9
451,432 + BACOVA_04511 0.54 +1.2
451,433 - BACOVA_04511 0.54 -0.7
451,433 - BACOVA_04511 0.54 -1.1
451,439 + BACOVA_04511 0.55 -0.6
451,439 + BACOVA_04511 0.55 +1.0
451,439 + BACOVA_04511 0.55 -1.3
451,440 - BACOVA_04511 0.55 -1.2
451,440 - BACOVA_04511 0.55 +0.4
451,442 + BACOVA_04511 0.55 +0.1
451,443 - BACOVA_04511 0.56 +0.4
451,522 - BACOVA_04511 0.71 -0.1
451,617 + BACOVA_04511 0.89 +0.5
451,642 - +2.4
451,642 - -0.2
451,645 + -0.6
451,685 + -0.2
451,685 + -0.4
451,693 + -0.1
451,709 - +0.1
451,751 - +0.3
451,772 + -0.3
451,772 + +0.9
451,773 - -0.4
451,787 - -0.2
451,821 + BACOVA_04512 0.12 -0.1
451,860 + BACOVA_04512 0.24 +1.8
451,926 - BACOVA_04512 0.44 -0.4
451,942 - BACOVA_04512 0.48 +0.5
451,942 - BACOVA_04512 0.48 -0.9
452,032 + BACOVA_04512 0.76 -0.9
452,033 - BACOVA_04512 0.76 -0.0
452,038 + BACOVA_04512 0.78 +1.2
452,038 + BACOVA_04512 0.78 -1.2
452,039 - BACOVA_04512 0.78 +0.9
452,039 - BACOVA_04512 0.78 +1.4
452,039 - BACOVA_04512 0.78 -1.7
452,076 - BACOVA_04512 0.89 -0.5
452,078 + BACOVA_04512 0.90 +0.7
452,079 - -0.1
452,079 - -1.4
452,105 + +0.1
452,106 - +0.5
452,130 + -1.7
452,130 + -1.4
452,145 - -0.1
452,145 - -0.1
452,164 - +0.8
452,167 + -1.6
452,169 + -0.7
452,215 - BACOVA_04513 0.12 -0.3
452,270 + BACOVA_04513 0.17 +0.8
452,280 - BACOVA_04513 0.18 -1.6
452,292 - BACOVA_04513 0.19 -2.9
452,292 - BACOVA_04513 0.19 -0.2
452,296 - BACOVA_04513 0.19 -0.1
452,296 - BACOVA_04513 0.19 +0.4
452,358 - BACOVA_04513 0.25 -1.5
452,370 + BACOVA_04513 0.26 -2.3
452,391 - BACOVA_04513 0.28 +0.4
452,406 + BACOVA_04513 0.30 -1.8
452,504 + BACOVA_04513 0.39 +0.1
452,505 - BACOVA_04513 0.39 -0.2
452,505 - BACOVA_04513 0.39 +0.4
452,509 + BACOVA_04513 0.39 -1.2
452,509 + BACOVA_04513 0.39 -0.6
452,509 + BACOVA_04513 0.39 +1.7
452,509 + BACOVA_04513 0.39 -0.7
452,586 + BACOVA_04513 0.47 +2.1
452,586 + BACOVA_04513 0.47 -1.0
452,628 - BACOVA_04513 0.51 -1.3
452,640 - BACOVA_04513 0.52 -0.8
452,640 - BACOVA_04513 0.52 +1.1
452,687 + BACOVA_04513 0.56 +0.6
452,687 + BACOVA_04513 0.56 +1.1
452,687 + BACOVA_04513 0.56 +0.9
452,687 + BACOVA_04513 0.56 +2.7
452,688 - BACOVA_04513 0.56 +0.2
452,688 - BACOVA_04513 0.56 -0.6
452,688 - BACOVA_04513 0.56 -0.0
452,703 - BACOVA_04513 0.58 -0.6
452,703 - BACOVA_04513 0.58 -0.2
452,703 - BACOVA_04513 0.58 -0.2
452,706 + BACOVA_04513 0.58 +0.4
452,706 + BACOVA_04513 0.58 -1.0
452,706 + BACOVA_04513 0.58 -0.6
452,771 + BACOVA_04513 0.64 -0.8
452,826 + BACOVA_04513 0.69 +0.9
452,827 - BACOVA_04513 0.69 +0.3
452,827 - BACOVA_04513 0.69 -0.5
452,828 + BACOVA_04513 0.69 -1.3
452,843 - BACOVA_04513 0.71 +0.8
452,843 - BACOVA_04513 0.71 -1.1
452,843 - BACOVA_04513 0.71 -1.2
452,856 + BACOVA_04513 0.72 -0.4
452,895 + BACOVA_04513 0.76 -1.2
452,896 - BACOVA_04513 0.76 -0.6
452,896 - BACOVA_04513 0.76 -1.4
452,984 + BACOVA_04513 0.84 -1.8
452,985 - BACOVA_04513 0.84 -0.9
452,989 + BACOVA_04513 0.85 -0.2
452,990 - BACOVA_04513 0.85 -0.1
453,069 + +0.3
453,072 - +0.9
453,075 - +1.7
453,087 + +0.4
453,087 + +0.6

Or see this region's nucleotide sequence