Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04281

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04280 and BACOVA_04281 are separated by 376 nucleotidesBACOVA_04281 and BACOVA_04282 are separated by 4 nucleotidesBACOVA_04282 and BACOVA_04283 are separated by 8 nucleotidesBACOVA_04283 and BACOVA_04284 are separated by 450 nucleotides BACOVA_04280: BACOVA_04280 - pyridine nucleotide-disulfide oxidoreductase, at 167,130 to 168,503 _04280 BACOVA_04281: BACOVA_04281 - ABC transporter, ATP-binding protein, at 168,880 to 170,514 _04281 BACOVA_04282: BACOVA_04282 - hypothetical protein, at 170,519 to 170,665 _04282 BACOVA_04283: BACOVA_04283 - hypothetical protein, at 170,674 to 170,796 _04283 BACOVA_04284: BACOVA_04284 - hydrolase, NUDIX family, at 171,247 to 172,035 _04284 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 167.898 kb on + strand, within BACOVA_04280at 167.898 kb on + strand, within BACOVA_04280at 167.899 kb on - strand, within BACOVA_04280at 167.901 kb on + strand, within BACOVA_04280at 167.901 kb on + strand, within BACOVA_04280at 167.905 kb on + strand, within BACOVA_04280at 167.905 kb on + strand, within BACOVA_04280at 167.905 kb on + strand, within BACOVA_04280at 168.030 kb on - strand, within BACOVA_04280at 168.042 kb on - strand, within BACOVA_04280at 168.044 kb on - strand, within BACOVA_04280at 168.080 kb on + strand, within BACOVA_04280at 168.172 kb on - strand, within BACOVA_04280at 168.182 kb on + strand, within BACOVA_04280at 168.182 kb on + strand, within BACOVA_04280at 168.182 kb on + strand, within BACOVA_04280at 168.240 kb on + strand, within BACOVA_04280at 168.291 kb on - strand, within BACOVA_04280at 168.312 kb on - strand, within BACOVA_04280at 168.312 kb on - strand, within BACOVA_04280at 168.312 kb on - strand, within BACOVA_04280at 168.317 kb on - strand, within BACOVA_04280at 168.317 kb on - strand, within BACOVA_04280at 168.317 kb on - strand, within BACOVA_04280at 168.332 kb on + strand, within BACOVA_04280at 168.396 kb on - strandat 168.400 kb on + strandat 168.404 kb on + strandat 168.405 kb on - strandat 168.500 kb on - strandat 168.501 kb on + strandat 168.518 kb on - strandat 168.641 kb on + strandat 168.656 kb on + strandat 168.686 kb on + strandat 168.692 kb on - strandat 168.695 kb on + strandat 168.696 kb on - strandat 168.696 kb on - strandat 168.696 kb on - strandat 168.699 kb on + strandat 168.714 kb on + strandat 168.715 kb on - strandat 168.722 kb on - strandat 168.722 kb on - strandat 168.740 kb on - strandat 168.755 kb on + strandat 168.776 kb on + strandat 168.808 kb on + strandat 168.872 kb on - strandat 168.885 kb on + strandat 168.907 kb on + strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.909 kb on + strandat 168.929 kb on + strandat 168.960 kb on + strandat 168.961 kb on - strandat 168.974 kb on + strandat 168.980 kb on + strandat 169.009 kb on - strandat 169.038 kb on - strandat 169.078 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.084 kb on - strand, within BACOVA_04281at 169.140 kb on - strand, within BACOVA_04281at 169.265 kb on + strand, within BACOVA_04281at 169.275 kb on + strand, within BACOVA_04281at 169.338 kb on + strand, within BACOVA_04281at 169.338 kb on + strand, within BACOVA_04281at 169.364 kb on + strand, within BACOVA_04281at 169.364 kb on + strand, within BACOVA_04281at 169.365 kb on + strand, within BACOVA_04281at 169.415 kb on + strand, within BACOVA_04281at 169.418 kb on - strand, within BACOVA_04281at 169.418 kb on - strand, within BACOVA_04281at 169.526 kb on - strand, within BACOVA_04281at 169.550 kb on - strand, within BACOVA_04281at 169.593 kb on + strand, within BACOVA_04281at 169.616 kb on + strand, within BACOVA_04281at 169.617 kb on - strand, within BACOVA_04281at 169.620 kb on + strand, within BACOVA_04281at 169.673 kb on + strand, within BACOVA_04281at 169.690 kb on - strand, within BACOVA_04281at 169.693 kb on - strand, within BACOVA_04281at 169.694 kb on + strand, within BACOVA_04281at 169.756 kb on - strand, within BACOVA_04281at 169.756 kb on - strand, within BACOVA_04281at 169.847 kb on + strand, within BACOVA_04281at 169.893 kb on - strand, within BACOVA_04281at 169.912 kb on - strand, within BACOVA_04281at 169.922 kb on - strand, within BACOVA_04281at 169.959 kb on + strand, within BACOVA_04281at 170.030 kb on + strand, within BACOVA_04281at 170.063 kb on + strand, within BACOVA_04281at 170.124 kb on + strand, within BACOVA_04281at 170.124 kb on + strand, within BACOVA_04281at 170.125 kb on - strand, within BACOVA_04281at 170.129 kb on - strand, within BACOVA_04281at 170.129 kb on - strand, within BACOVA_04281at 170.134 kb on + strand, within BACOVA_04281at 170.176 kb on - strand, within BACOVA_04281at 170.191 kb on + strand, within BACOVA_04281at 170.191 kb on + strand, within BACOVA_04281at 170.228 kb on + strand, within BACOVA_04281at 170.229 kb on - strand, within BACOVA_04281at 170.236 kb on - strand, within BACOVA_04281at 170.248 kb on + strand, within BACOVA_04281at 170.340 kb on + strand, within BACOVA_04281at 170.347 kb on - strand, within BACOVA_04281at 170.356 kb on - strandat 170.376 kb on + strandat 170.377 kb on - strandat 170.377 kb on - strandat 170.377 kb on - strandat 170.393 kb on + strandat 170.419 kb on - strandat 170.447 kb on + strandat 170.504 kb on + strandat 170.504 kb on + strandat 170.512 kb on + strandat 170.513 kb on - strandat 170.513 kb on - strandat 170.517 kb on + strandat 170.517 kb on + strandat 170.518 kb on - strandat 170.553 kb on + strand, within BACOVA_04282at 170.554 kb on - strand, within BACOVA_04282at 170.583 kb on + strand, within BACOVA_04282at 170.584 kb on - strand, within BACOVA_04282at 170.658 kb on + strandat 170.658 kb on + strandat 170.698 kb on - strand, within BACOVA_04283at 170.714 kb on - strand, within BACOVA_04283at 170.778 kb on + strand, within BACOVA_04283at 170.779 kb on - strand, within BACOVA_04283at 170.813 kb on - strandat 170.838 kb on - strandat 171.169 kb on + strandat 171.182 kb on - strandat 171.238 kb on - strandat 171.276 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.323 kb on + strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.324 kb on - strandat 171.354 kb on + strand, within BACOVA_04284at 171.355 kb on - strand, within BACOVA_04284at 171.361 kb on - strand, within BACOVA_04284at 171.388 kb on - strand, within BACOVA_04284at 171.394 kb on - strand, within BACOVA_04284at 171.398 kb on + strand, within BACOVA_04284at 171.484 kb on + strand, within BACOVA_04284at 171.490 kb on + strand, within BACOVA_04284at 171.490 kb on + strand, within BACOVA_04284at 171.491 kb on - strand, within BACOVA_04284at 171.491 kb on - strand, within BACOVA_04284

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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167,898 + BACOVA_04280 0.56 -0.4
167,898 + BACOVA_04280 0.56 -0.9
167,899 - BACOVA_04280 0.56 -1.1
167,901 + BACOVA_04280 0.56 +0.3
167,901 + BACOVA_04280 0.56 +0.6
167,905 + BACOVA_04280 0.56 -0.0
167,905 + BACOVA_04280 0.56 +0.1
167,905 + BACOVA_04280 0.56 -0.0
168,030 - BACOVA_04280 0.66 -0.7
168,042 - BACOVA_04280 0.66 +0.2
168,044 - BACOVA_04280 0.67 -0.0
168,080 + BACOVA_04280 0.69 -0.4
168,172 - BACOVA_04280 0.76 +0.4
168,182 + BACOVA_04280 0.77 -0.2
168,182 + BACOVA_04280 0.77 -0.2
168,182 + BACOVA_04280 0.77 -1.6
168,240 + BACOVA_04280 0.81 -0.4
168,291 - BACOVA_04280 0.84 -0.8
168,312 - BACOVA_04280 0.86 -0.5
168,312 - BACOVA_04280 0.86 +1.1
168,312 - BACOVA_04280 0.86 +0.2
168,317 - BACOVA_04280 0.86 +0.3
168,317 - BACOVA_04280 0.86 +0.0
168,317 - BACOVA_04280 0.86 +0.2
168,332 + BACOVA_04280 0.87 -1.4
168,396 - +0.3
168,400 + +0.2
168,404 + -1.7
168,405 - -1.4
168,500 - +3.8
168,501 + +0.1
168,518 - -0.2
168,641 + +0.5
168,656 + -0.6
168,686 + +2.7
168,692 - +1.3
168,695 + -1.9
168,696 - +0.3
168,696 - -0.5
168,696 - +1.5
168,699 + +9.3
168,714 + +0.9
168,715 - -0.1
168,722 - -0.9
168,722 - +0.2
168,740 - +0.1
168,755 + -1.6
168,776 + -0.4
168,808 + -2.2
168,872 - +1.0
168,885 + +2.3
168,907 + -0.9
168,908 - -1.6
168,908 - -1.2
168,908 - +1.3
168,908 - -0.6
168,909 + -1.3
168,929 + +0.7
168,960 + -0.1
168,961 - -0.6
168,974 + -1.3
168,980 + +1.1
169,009 - -0.5
169,038 - -1.4
169,078 + BACOVA_04281 0.12 -0.5
169,081 + BACOVA_04281 0.12 -0.5
169,081 + BACOVA_04281 0.12 +0.7
169,081 + BACOVA_04281 0.12 -1.3
169,081 + BACOVA_04281 0.12 -1.2
169,081 + BACOVA_04281 0.12 -0.8
169,082 - BACOVA_04281 0.12 -0.3
169,082 - BACOVA_04281 0.12 -0.6
169,082 - BACOVA_04281 0.12 +0.2
169,082 - BACOVA_04281 0.12 -0.8
169,084 - BACOVA_04281 0.12 -1.1
169,140 - BACOVA_04281 0.16 +0.7
169,265 + BACOVA_04281 0.24 -0.1
169,275 + BACOVA_04281 0.24 -1.3
169,338 + BACOVA_04281 0.28 +1.3
169,338 + BACOVA_04281 0.28 +1.7
169,364 + BACOVA_04281 0.30 -1.5
169,364 + BACOVA_04281 0.30 +1.1
169,365 + BACOVA_04281 0.30 +1.7
169,415 + BACOVA_04281 0.33 +0.8
169,418 - BACOVA_04281 0.33 -0.8
169,418 - BACOVA_04281 0.33 -0.0
169,526 - BACOVA_04281 0.40 -0.2
169,550 - BACOVA_04281 0.41 -1.8
169,593 + BACOVA_04281 0.44 -0.6
169,616 + BACOVA_04281 0.45 -0.8
169,617 - BACOVA_04281 0.45 -0.9
169,620 + BACOVA_04281 0.45 -1.0
169,673 + BACOVA_04281 0.49 -0.8
169,690 - BACOVA_04281 0.50 +0.1
169,693 - BACOVA_04281 0.50 -0.6
169,694 + BACOVA_04281 0.50 +0.2
169,756 - BACOVA_04281 0.54 -0.0
169,756 - BACOVA_04281 0.54 +0.7
169,847 + BACOVA_04281 0.59 -0.5
169,893 - BACOVA_04281 0.62 +0.1
169,912 - BACOVA_04281 0.63 +0.1
169,922 - BACOVA_04281 0.64 -0.6
169,959 + BACOVA_04281 0.66 -0.5
170,030 + BACOVA_04281 0.70 -0.1
170,063 + BACOVA_04281 0.72 +1.9
170,124 + BACOVA_04281 0.76 -0.5
170,124 + BACOVA_04281 0.76 -0.7
170,125 - BACOVA_04281 0.76 +0.6
170,129 - BACOVA_04281 0.76 -1.0
170,129 - BACOVA_04281 0.76 -0.4
170,134 + BACOVA_04281 0.77 +0.5
170,176 - BACOVA_04281 0.79 -0.9
170,191 + BACOVA_04281 0.80 -1.2
170,191 + BACOVA_04281 0.80 +1.7
170,228 + BACOVA_04281 0.82 -1.4
170,229 - BACOVA_04281 0.83 +1.1
170,236 - BACOVA_04281 0.83 +0.2
170,248 + BACOVA_04281 0.84 +1.3
170,340 + BACOVA_04281 0.89 -0.9
170,347 - BACOVA_04281 0.90 -1.6
170,356 - +0.1
170,376 + +0.2
170,377 - -0.8
170,377 - -0.2
170,377 - +1.1
170,393 + -0.7
170,419 - -0.0
170,447 + +0.3
170,504 + -0.2
170,504 + -0.4
170,512 + -0.1
170,513 - +0.3
170,513 - +0.2
170,517 + -1.2
170,517 + -0.5
170,518 - -1.7
170,553 + BACOVA_04282 0.23 +0.1
170,554 - BACOVA_04282 0.24 -0.3
170,583 + BACOVA_04282 0.44 +0.7
170,584 - BACOVA_04282 0.44 -1.5
170,658 + -0.9
170,658 + -1.3
170,698 - BACOVA_04283 0.20 -0.5
170,714 - BACOVA_04283 0.33 -0.2
170,778 + BACOVA_04283 0.85 -1.2
170,779 - BACOVA_04283 0.85 -0.1
170,813 - -2.7
170,838 - -0.6
171,169 + -0.0
171,182 - -2.3
171,238 - +2.1
171,276 + -1.2
171,323 + -0.8
171,323 + -0.6
171,323 + -0.9
171,323 + +0.9
171,324 - -0.6
171,324 - +1.9
171,324 - -2.4
171,324 - +0.9
171,354 + BACOVA_04284 0.14 +0.5
171,355 - BACOVA_04284 0.14 +2.7
171,361 - BACOVA_04284 0.14 -0.2
171,388 - BACOVA_04284 0.18 -0.0
171,394 - BACOVA_04284 0.19 -1.3
171,398 + BACOVA_04284 0.19 -0.8
171,484 + BACOVA_04284 0.30 -0.5
171,490 + BACOVA_04284 0.31 -1.3
171,490 + BACOVA_04284 0.31 +1.1
171,491 - BACOVA_04284 0.31 -0.3
171,491 - BACOVA_04284 0.31 -0.4

Or see this region's nucleotide sequence