Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04057 and BACOVA_04059 are separated by 26 nucleotides BACOVA_04059 and BACOVA_04060 overlap by 4 nucleotides BACOVA_04060 and BACOVA_04061 are separated by 4 nucleotides BACOVA_04061 and BACOVA_04062 are separated by 94 nucleotides
BACOVA_04057: BACOVA_04057 - recombination protein RecR, at 391,349 to 392,074
_04057
BACOVA_04059: BACOVA_04059 - hypothetical protein, at 392,101 to 392,559
_04059
BACOVA_04060: BACOVA_04060 - acetyltransferase, GNAT family, at 392,556 to 393,092
_04060
BACOVA_04061: BACOVA_04061 - putative ACR, COG1678, at 393,097 to 393,687
_04061
BACOVA_04062: BACOVA_04062 - aminotransferase, class I/II, at 393,782 to 395,098
_04062
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 391.603 kb on + strand, within BACOVA_04057 at 391.609 kb on - strand, within BACOVA_04057 at 391.651 kb on + strand, within BACOVA_04057 at 391.775 kb on + strand, within BACOVA_04057 at 391.919 kb on - strand, within BACOVA_04057 at 391.928 kb on + strand, within BACOVA_04057 at 391.931 kb on - strand, within BACOVA_04057 at 391.949 kb on - strand, within BACOVA_04057 at 391.975 kb on - strand, within BACOVA_04057 at 392.008 kb on - strand at 392.009 kb on + strand at 392.080 kb on - strand at 392.226 kb on + strand, within BACOVA_04059 at 392.242 kb on + strand, within BACOVA_04059 at 392.344 kb on - strand, within BACOVA_04059 at 392.402 kb on - strand, within BACOVA_04059 at 392.406 kb on - strand, within BACOVA_04059 at 392.409 kb on + strand, within BACOVA_04059 at 392.410 kb on - strand, within BACOVA_04059 at 392.434 kb on + strand, within BACOVA_04059 at 392.434 kb on + strand, within BACOVA_04059 at 392.622 kb on - strand, within BACOVA_04060 at 392.624 kb on - strand, within BACOVA_04060 at 392.691 kb on + strand, within BACOVA_04060 at 392.708 kb on + strand, within BACOVA_04060 at 392.708 kb on + strand, within BACOVA_04060 at 392.708 kb on + strand, within BACOVA_04060 at 392.709 kb on - strand, within BACOVA_04060 at 392.749 kb on + strand, within BACOVA_04060 at 392.750 kb on - strand, within BACOVA_04060 at 392.784 kb on - strand, within BACOVA_04060 at 392.792 kb on + strand, within BACOVA_04060 at 392.792 kb on + strand, within BACOVA_04060 at 392.801 kb on + strand, within BACOVA_04060 at 392.804 kb on + strand, within BACOVA_04060 at 392.805 kb on - strand, within BACOVA_04060 at 392.944 kb on - strand, within BACOVA_04060 at 392.944 kb on - strand, within BACOVA_04060 at 392.963 kb on + strand, within BACOVA_04060 at 393.084 kb on - strand at 393.108 kb on + strand at 393.151 kb on + strand at 393.151 kb on + strand at 393.152 kb on + strand at 393.178 kb on - strand, within BACOVA_04061 at 393.203 kb on + strand, within BACOVA_04061 at 393.204 kb on - strand, within BACOVA_04061 at 393.253 kb on - strand, within BACOVA_04061 at 393.256 kb on + strand, within BACOVA_04061 at 393.326 kb on - strand, within BACOVA_04061 at 393.326 kb on - strand, within BACOVA_04061 at 393.330 kb on + strand, within BACOVA_04061 at 393.333 kb on - strand, within BACOVA_04061 at 393.366 kb on - strand, within BACOVA_04061 at 393.399 kb on + strand, within BACOVA_04061 at 393.400 kb on - strand, within BACOVA_04061 at 393.406 kb on + strand, within BACOVA_04061 at 393.407 kb on - strand, within BACOVA_04061 at 393.425 kb on - strand, within BACOVA_04061 at 393.442 kb on - strand, within BACOVA_04061 at 393.476 kb on + strand, within BACOVA_04061 at 393.502 kb on - strand, within BACOVA_04061 at 393.601 kb on + strand, within BACOVA_04061 at 393.602 kb on - strand, within BACOVA_04061 at 393.663 kb on + strand at 393.663 kb on + strand at 393.681 kb on + strand at 393.694 kb on - strand at 393.694 kb on - strand at 393.694 kb on - strand at 393.716 kb on - strand at 393.716 kb on - strand at 393.747 kb on - strand at 393.759 kb on + strand at 393.759 kb on + strand at 393.760 kb on - strand at 393.770 kb on + strand at 393.771 kb on - strand at 393.771 kb on - strand at 393.771 kb on - strand at 393.810 kb on - strand at 393.838 kb on - strand at 393.863 kb on - strand at 393.895 kb on + strand at 393.903 kb on - strand at 393.903 kb on - strand at 393.927 kb on + strand, within BACOVA_04062 at 394.023 kb on + strand, within BACOVA_04062 at 394.023 kb on + strand, within BACOVA_04062 at 394.024 kb on - strand, within BACOVA_04062 at 394.083 kb on + strand, within BACOVA_04062 at 394.083 kb on + strand, within BACOVA_04062 at 394.086 kb on - strand, within BACOVA_04062
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 391,603 + BACOVA_04057 0.35 +1.9 391,609 - BACOVA_04057 0.36 -0.2 391,651 + BACOVA_04057 0.42 +1.3 391,775 + BACOVA_04057 0.59 -0.4 391,919 - BACOVA_04057 0.79 +7.6 391,928 + BACOVA_04057 0.80 +0.9 391,931 - BACOVA_04057 0.80 +4.8 391,949 - BACOVA_04057 0.83 +12.0 391,975 - BACOVA_04057 0.86 +6.9 392,008 - +6.5 392,009 + +0.3 392,080 - +5.1 392,226 + BACOVA_04059 0.27 -0.7 392,242 + BACOVA_04059 0.31 +0.1 392,344 - BACOVA_04059 0.53 +0.5 392,402 - BACOVA_04059 0.66 +3.1 392,406 - BACOVA_04059 0.66 +0.9 392,409 + BACOVA_04059 0.67 -2.1 392,410 - BACOVA_04059 0.67 +4.6 392,434 + BACOVA_04059 0.73 -0.7 392,434 + BACOVA_04059 0.73 +0.3 392,622 - BACOVA_04060 0.12 +5.3 392,624 - BACOVA_04060 0.13 +4.7 392,691 + BACOVA_04060 0.25 -0.8 392,708 + BACOVA_04060 0.28 +0.1 392,708 + BACOVA_04060 0.28 +1.1 392,708 + BACOVA_04060 0.28 +5.7 392,709 - BACOVA_04060 0.28 +0.9 392,749 + BACOVA_04060 0.36 +6.0 392,750 - BACOVA_04060 0.36 +6.9 392,784 - BACOVA_04060 0.42 +1.1 392,792 + BACOVA_04060 0.44 +5.8 392,792 + BACOVA_04060 0.44 +1.1 392,801 + BACOVA_04060 0.46 +0.9 392,804 + BACOVA_04060 0.46 +4.3 392,805 - BACOVA_04060 0.46 +0.7 392,944 - BACOVA_04060 0.72 +0.1 392,944 - BACOVA_04060 0.72 +0.7 392,963 + BACOVA_04060 0.76 +5.5 393,084 - +0.6 393,108 + -0.4 393,151 + -0.0 393,151 + -0.2 393,152 + -0.4 393,178 - BACOVA_04061 0.14 -2.1 393,203 + BACOVA_04061 0.18 -1.7 393,204 - BACOVA_04061 0.18 +0.6 393,253 - BACOVA_04061 0.26 -0.6 393,256 + BACOVA_04061 0.27 +0.2 393,326 - BACOVA_04061 0.39 -2.4 393,326 - BACOVA_04061 0.39 -0.5 393,330 + BACOVA_04061 0.39 -0.9 393,333 - BACOVA_04061 0.40 +3.1 393,366 - BACOVA_04061 0.46 +0.7 393,399 + BACOVA_04061 0.51 -1.1 393,400 - BACOVA_04061 0.51 -0.2 393,406 + BACOVA_04061 0.52 -0.5 393,407 - BACOVA_04061 0.52 +2.7 393,425 - BACOVA_04061 0.55 +1.5 393,442 - BACOVA_04061 0.58 +0.9 393,476 + BACOVA_04061 0.64 +0.1 393,502 - BACOVA_04061 0.69 +2.0 393,601 + BACOVA_04061 0.85 -1.3 393,602 - BACOVA_04061 0.85 +0.3 393,663 + -0.3 393,663 + +0.2 393,681 + +0.1 393,694 - +2.1 393,694 - -0.6 393,694 - -0.1 393,716 - -0.2 393,716 - +0.5 393,747 - +0.6 393,759 + -1.0 393,759 + +0.4 393,760 - -1.1 393,770 + -1.5 393,771 - -2.7 393,771 - +0.1 393,771 - +0.1 393,810 - -1.0 393,838 - +0.2 393,863 - +1.0 393,895 + -1.4 393,903 - +1.2 393,903 - -1.1 393,927 + BACOVA_04062 0.11 +0.4 394,023 + BACOVA_04062 0.18 -0.2 394,023 + BACOVA_04062 0.18 -0.3 394,024 - BACOVA_04062 0.18 +1.1 394,083 + BACOVA_04062 0.23 -0.3 394,083 + BACOVA_04062 0.23 -0.5 394,086 - BACOVA_04062 0.23 -0.5
Or see this region's nucleotide sequence