Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03999 and BACOVA_04001 are separated by 74 nucleotides BACOVA_04001 and BACOVA_04000 overlap by 249 nucleotides BACOVA_04000 and BACOVA_04002 are separated by 253 nucleotides BACOVA_04002 and BACOVA_04003 overlap by 13 nucleotides BACOVA_04003 and BACOVA_04004 overlap by 29 nucleotides
BACOVA_03999: BACOVA_03999 - hypothetical protein, at 333,918 to 335,030
_03999
BACOVA_04001: BACOVA_04001 - hypothetical protein, at 335,105 to 335,443
_04001
BACOVA_04000: BACOVA_04000 - hypothetical protein, at 335,195 to 335,332
_04000
BACOVA_04002: BACOVA_04002 - hypothetical protein, at 335,586 to 336,563
_04002
BACOVA_04003: BACOVA_04003 - hypothetical protein, at 336,551 to 336,706
_04003
BACOVA_04004: BACOVA_04004 - hypothetical protein, at 336,678 to 338,516
_04004
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 334.592 kb on + strand, within BACOVA_03999 at 334.688 kb on - strand, within BACOVA_03999 at 334.803 kb on - strand, within BACOVA_03999 at 334.855 kb on - strand, within BACOVA_03999 at 334.859 kb on + strand, within BACOVA_03999 at 334.864 kb on + strand, within BACOVA_03999 at 334.929 kb on - strand at 334.944 kb on - strand at 334.953 kb on + strand at 335.053 kb on - strand at 335.078 kb on + strand at 335.151 kb on - strand, within BACOVA_04001 at 335.183 kb on - strand, within BACOVA_04001 at 335.184 kb on + strand, within BACOVA_04001 at 335.184 kb on + strand, within BACOVA_04001 at 335.185 kb on - strand, within BACOVA_04001 at 335.185 kb on - strand, within BACOVA_04001 at 335.185 kb on - strand, within BACOVA_04001 at 335.209 kb on - strand at 335.209 kb on - strand at 335.235 kb on - strand at 335.257 kb on - strand at 335.275 kb on - strand at 335.283 kb on + strand at 335.303 kb on + strand at 335.324 kb on + strand at 335.324 kb on + strand at 335.398 kb on + strand at 335.409 kb on - strand at 335.460 kb on - strand at 335.465 kb on + strand at 335.576 kb on + strand at 335.583 kb on + strand at 335.646 kb on - strand at 335.646 kb on - strand at 335.734 kb on - strand, within BACOVA_04002 at 335.984 kb on + strand, within BACOVA_04002 at 336.047 kb on + strand, within BACOVA_04002 at 336.075 kb on - strand, within BACOVA_04002 at 336.077 kb on + strand, within BACOVA_04002 at 336.077 kb on + strand, within BACOVA_04002 at 336.083 kb on + strand, within BACOVA_04002 at 336.086 kb on + strand, within BACOVA_04002 at 336.088 kb on + strand, within BACOVA_04002 at 336.088 kb on + strand, within BACOVA_04002 at 336.201 kb on + strand, within BACOVA_04002 at 336.202 kb on - strand, within BACOVA_04002 at 336.203 kb on + strand, within BACOVA_04002 at 336.203 kb on + strand, within BACOVA_04002 at 336.488 kb on + strand at 336.489 kb on - strand at 336.561 kb on + strand at 336.562 kb on - strand at 336.617 kb on - strand, within BACOVA_04003 at 336.741 kb on + strand at 336.741 kb on + strand at 336.742 kb on - strand at 336.742 kb on - strand at 336.818 kb on + strand at 336.835 kb on + strand at 336.892 kb on - strand, within BACOVA_04004 at 337.069 kb on + strand, within BACOVA_04004 at 337.070 kb on - strand, within BACOVA_04004 at 337.070 kb on - strand, within BACOVA_04004 at 337.147 kb on - strand, within BACOVA_04004 at 337.147 kb on - strand, within BACOVA_04004 at 337.234 kb on - strand, within BACOVA_04004 at 337.234 kb on - strand, within BACOVA_04004 at 337.503 kb on + strand, within BACOVA_04004 at 337.503 kb on + strand, within BACOVA_04004 at 337.518 kb on - strand, within BACOVA_04004
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 334,592 + BACOVA_03999 0.61 -1.1 334,688 - BACOVA_03999 0.69 -1.1 334,803 - BACOVA_03999 0.80 -0.8 334,855 - BACOVA_03999 0.84 -2.3 334,859 + BACOVA_03999 0.85 -0.2 334,864 + BACOVA_03999 0.85 -1.8 334,929 - +0.9 334,944 - -0.3 334,953 + -1.1 335,053 - -0.9 335,078 + +1.1 335,151 - BACOVA_04001 0.14 -1.3 335,183 - BACOVA_04001 0.23 +1.9 335,184 + BACOVA_04001 0.23 +0.3 335,184 + BACOVA_04001 0.23 -0.9 335,185 - BACOVA_04001 0.24 +0.5 335,185 - BACOVA_04001 0.24 +2.9 335,185 - BACOVA_04001 0.24 +1.0 335,209 - +0.9 335,209 - +0.7 335,235 - +0.0 335,257 - +1.3 335,275 - +0.0 335,283 + +0.9 335,303 + -1.4 335,324 + -0.8 335,324 + +0.0 335,398 + +2.3 335,409 - +0.9 335,460 - -0.4 335,465 + -0.6 335,576 + +1.3 335,583 + +0.1 335,646 - +1.1 335,646 - +0.7 335,734 - BACOVA_04002 0.15 +1.1 335,984 + BACOVA_04002 0.41 -0.6 336,047 + BACOVA_04002 0.47 +0.1 336,075 - BACOVA_04002 0.50 +0.9 336,077 + BACOVA_04002 0.50 +1.5 336,077 + BACOVA_04002 0.50 -0.1 336,083 + BACOVA_04002 0.51 +0.6 336,086 + BACOVA_04002 0.51 +0.5 336,088 + BACOVA_04002 0.51 -0.9 336,088 + BACOVA_04002 0.51 +0.9 336,201 + BACOVA_04002 0.63 -1.0 336,202 - BACOVA_04002 0.63 -0.9 336,203 + BACOVA_04002 0.63 -0.3 336,203 + BACOVA_04002 0.63 +0.7 336,488 + -1.2 336,489 - +0.0 336,561 + -0.2 336,562 - -0.4 336,617 - BACOVA_04003 0.42 -2.9 336,741 + +1.5 336,741 + +0.1 336,742 - -0.6 336,742 - -0.1 336,818 + +0.6 336,835 + +0.5 336,892 - BACOVA_04004 0.12 +2.5 337,069 + BACOVA_04004 0.21 +0.6 337,070 - BACOVA_04004 0.21 +0.7 337,070 - BACOVA_04004 0.21 -1.6 337,147 - BACOVA_04004 0.26 -0.6 337,147 - BACOVA_04004 0.26 -0.4 337,234 - BACOVA_04004 0.30 -0.1 337,234 - BACOVA_04004 0.30 +1.9 337,503 + BACOVA_04004 0.45 +0.8 337,503 + BACOVA_04004 0.45 +0.0 337,518 - BACOVA_04004 0.46 -0.3
Or see this region's nucleotide sequence