Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03898

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03895 and BACOVA_03896 overlap by 4 nucleotidesBACOVA_03896 and BACOVA_03897 are separated by 151 nucleotidesBACOVA_03897 and BACOVA_03898 are separated by 60 nucleotidesBACOVA_03898 and BACOVA_03899 overlap by 32 nucleotidesBACOVA_03899 and BACOVA_03900 are separated by 111 nucleotides BACOVA_03895: BACOVA_03895 - hypothetical protein, at 236,648 to 237,412 _03895 BACOVA_03896: BACOVA_03896 - hypothetical protein, at 237,409 to 237,846 _03896 BACOVA_03897: BACOVA_03897 - hypothetical protein, at 237,998 to 238,249 _03897 BACOVA_03898: BACOVA_03898 - hypothetical protein, at 238,310 to 238,966 _03898 BACOVA_03899: BACOVA_03899 - hypothetical protein, at 238,935 to 239,687 _03899 BACOVA_03900: BACOVA_03900 - hypothetical protein, at 239,799 to 240,374 _03900 Position (kb) 238 239Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 237.318 kb on - strand, within BACOVA_03895at 237.430 kb on - strandat 237.483 kb on - strand, within BACOVA_03896at 237.536 kb on - strand, within BACOVA_03896at 237.544 kb on - strand, within BACOVA_03896at 237.649 kb on - strand, within BACOVA_03896at 237.733 kb on - strand, within BACOVA_03896at 237.818 kb on - strandat 237.849 kb on - strandat 237.852 kb on - strandat 237.852 kb on - strandat 237.855 kb on - strandat 237.867 kb on - strandat 237.874 kb on - strandat 237.906 kb on - strandat 237.909 kb on - strandat 237.931 kb on - strandat 237.931 kb on - strandat 237.961 kb on - strandat 237.970 kb on + strandat 237.970 kb on + strandat 237.995 kb on - strandat 238.027 kb on + strand, within BACOVA_03897at 238.095 kb on - strand, within BACOVA_03897at 238.114 kb on + strand, within BACOVA_03897at 238.152 kb on + strand, within BACOVA_03897at 238.158 kb on - strand, within BACOVA_03897at 238.158 kb on - strand, within BACOVA_03897at 238.170 kb on - strand, within BACOVA_03897at 238.216 kb on + strand, within BACOVA_03897at 238.216 kb on + strand, within BACOVA_03897at 238.217 kb on - strand, within BACOVA_03897at 238.234 kb on + strandat 238.235 kb on - strandat 238.247 kb on + strandat 238.248 kb on - strandat 238.297 kb on - strandat 238.302 kb on - strandat 238.306 kb on - strandat 238.345 kb on + strandat 238.346 kb on - strandat 238.465 kb on - strand, within BACOVA_03898at 238.490 kb on + strand, within BACOVA_03898at 238.491 kb on - strand, within BACOVA_03898at 238.491 kb on - strand, within BACOVA_03898at 238.493 kb on - strand, within BACOVA_03898at 238.536 kb on + strand, within BACOVA_03898at 238.541 kb on + strand, within BACOVA_03898at 238.544 kb on - strand, within BACOVA_03898at 238.615 kb on + strand, within BACOVA_03898at 238.666 kb on + strand, within BACOVA_03898at 238.757 kb on - strand, within BACOVA_03898at 238.822 kb on + strand, within BACOVA_03898at 238.830 kb on + strand, within BACOVA_03898at 238.831 kb on - strand, within BACOVA_03898at 238.835 kb on - strand, within BACOVA_03898at 238.911 kb on + strandat 238.920 kb on + strandat 238.921 kb on - strandat 238.948 kb on + strandat 238.949 kb on - strandat 238.952 kb on - strandat 238.954 kb on + strandat 238.954 kb on + strandat 239.009 kb on + strandat 239.041 kb on + strand, within BACOVA_03899at 239.041 kb on + strand, within BACOVA_03899at 239.185 kb on - strand, within BACOVA_03899at 239.226 kb on + strand, within BACOVA_03899at 239.231 kb on - strand, within BACOVA_03899at 239.231 kb on - strand, within BACOVA_03899at 239.234 kb on + strand, within BACOVA_03899at 239.234 kb on + strand, within BACOVA_03899at 239.235 kb on - strand, within BACOVA_03899at 239.237 kb on + strand, within BACOVA_03899at 239.237 kb on + strand, within BACOVA_03899at 239.251 kb on + strand, within BACOVA_03899at 239.267 kb on + strand, within BACOVA_03899at 239.268 kb on - strand, within BACOVA_03899at 239.268 kb on - strand, within BACOVA_03899at 239.279 kb on - strand, within BACOVA_03899at 239.314 kb on + strand, within BACOVA_03899at 239.319 kb on + strand, within BACOVA_03899at 239.370 kb on + strand, within BACOVA_03899at 239.371 kb on - strand, within BACOVA_03899at 239.383 kb on - strand, within BACOVA_03899at 239.413 kb on + strand, within BACOVA_03899at 239.445 kb on + strand, within BACOVA_03899at 239.455 kb on - strand, within BACOVA_03899at 239.537 kb on + strand, within BACOVA_03899at 239.562 kb on - strand, within BACOVA_03899at 239.598 kb on - strand, within BACOVA_03899at 239.658 kb on + strandat 239.660 kb on + strandat 239.663 kb on + strandat 239.663 kb on + strandat 239.665 kb on + strandat 239.666 kb on - strandat 239.666 kb on - strandat 239.666 kb on - strandat 239.708 kb on + strandat 239.733 kb on + strandat 239.773 kb on - strandat 239.804 kb on + strandat 239.806 kb on + strandat 239.957 kb on + strand, within BACOVA_03900

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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237,318 - BACOVA_03895 0.88 -2.0
237,430 - -0.3
237,483 - BACOVA_03896 0.17 +0.6
237,536 - BACOVA_03896 0.29 -0.8
237,544 - BACOVA_03896 0.31 +1.1
237,649 - BACOVA_03896 0.55 +0.5
237,733 - BACOVA_03896 0.74 -0.5
237,818 - +0.3
237,849 - -0.3
237,852 - +0.3
237,852 - -0.8
237,855 - +0.7
237,867 - +2.0
237,874 - +1.2
237,906 - -0.8
237,909 - +0.5
237,931 - -0.5
237,931 - +1.3
237,961 - +1.7
237,970 + -1.6
237,970 + +1.3
237,995 - -1.4
238,027 + BACOVA_03897 0.12 +0.0
238,095 - BACOVA_03897 0.38 +0.5
238,114 + BACOVA_03897 0.46 +0.3
238,152 + BACOVA_03897 0.61 +0.4
238,158 - BACOVA_03897 0.63 -1.7
238,158 - BACOVA_03897 0.63 -0.6
238,170 - BACOVA_03897 0.68 -0.1
238,216 + BACOVA_03897 0.87 +0.3
238,216 + BACOVA_03897 0.87 +0.1
238,217 - BACOVA_03897 0.87 +0.7
238,234 + -1.2
238,235 - -0.8
238,247 + +0.2
238,248 - +0.7
238,297 - +0.3
238,302 - -0.0
238,306 - -0.3
238,345 + +0.1
238,346 - +0.2
238,465 - BACOVA_03898 0.24 -0.6
238,490 + BACOVA_03898 0.27 -0.4
238,491 - BACOVA_03898 0.28 +0.0
238,491 - BACOVA_03898 0.28 -1.1
238,493 - BACOVA_03898 0.28 +0.1
238,536 + BACOVA_03898 0.34 +0.0
238,541 + BACOVA_03898 0.35 +1.1
238,544 - BACOVA_03898 0.36 +1.1
238,615 + BACOVA_03898 0.46 -1.6
238,666 + BACOVA_03898 0.54 +1.3
238,757 - BACOVA_03898 0.68 +0.1
238,822 + BACOVA_03898 0.78 +0.3
238,830 + BACOVA_03898 0.79 -1.7
238,831 - BACOVA_03898 0.79 -0.2
238,835 - BACOVA_03898 0.80 -0.7
238,911 + +0.9
238,920 + +0.9
238,921 - -0.3
238,948 + +0.1
238,949 - +0.5
238,952 - -1.3
238,954 + -0.5
238,954 + +0.5
239,009 + +0.1
239,041 + BACOVA_03899 0.14 -0.5
239,041 + BACOVA_03899 0.14 -0.5
239,185 - BACOVA_03899 0.33 -1.1
239,226 + BACOVA_03899 0.39 +3.6
239,231 - BACOVA_03899 0.39 -1.1
239,231 - BACOVA_03899 0.39 +0.6
239,234 + BACOVA_03899 0.40 -0.3
239,234 + BACOVA_03899 0.40 +1.5
239,235 - BACOVA_03899 0.40 -1.2
239,237 + BACOVA_03899 0.40 -1.6
239,237 + BACOVA_03899 0.40 +4.4
239,251 + BACOVA_03899 0.42 -0.5
239,267 + BACOVA_03899 0.44 -1.1
239,268 - BACOVA_03899 0.44 -0.5
239,268 - BACOVA_03899 0.44 -0.8
239,279 - BACOVA_03899 0.46 -0.1
239,314 + BACOVA_03899 0.50 -1.0
239,319 + BACOVA_03899 0.51 +0.3
239,370 + BACOVA_03899 0.58 +0.1
239,371 - BACOVA_03899 0.58 +0.5
239,383 - BACOVA_03899 0.59 -1.2
239,413 + BACOVA_03899 0.63 +0.3
239,445 + BACOVA_03899 0.68 -0.9
239,455 - BACOVA_03899 0.69 -0.2
239,537 + BACOVA_03899 0.80 -0.1
239,562 - BACOVA_03899 0.83 -0.2
239,598 - BACOVA_03899 0.88 -0.3
239,658 + -0.5
239,660 + -0.7
239,663 + -0.6
239,663 + -0.4
239,665 + -0.7
239,666 - +1.4
239,666 - +0.1
239,666 - +1.5
239,708 + -0.2
239,733 + +1.5
239,773 - +0.7
239,804 + +0.1
239,806 + -0.4
239,957 + BACOVA_03900 0.27 -0.3

Or see this region's nucleotide sequence