Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03443 and BACOVA_03444 are separated by 13 nucleotides BACOVA_03444 and BACOVA_03445 overlap by 17 nucleotides
BACOVA_03443: BACOVA_03443 - TonB-linked outer membrane protein, SusC/RagA family, at 179,875 to 183,096
_03443
BACOVA_03444: BACOVA_03444 - SusD family protein, at 183,110 to 184,966
_03444
BACOVA_03445: BACOVA_03445 - IPT/TIG domain protein, at 184,950 to 186,332
_03445
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 182.112 kb on + strand, within BACOVA_03443 at 182.115 kb on - strand, within BACOVA_03443 at 182.121 kb on + strand, within BACOVA_03443 at 182.139 kb on + strand, within BACOVA_03443 at 182.148 kb on + strand, within BACOVA_03443 at 182.174 kb on + strand, within BACOVA_03443 at 182.174 kb on + strand, within BACOVA_03443 at 182.181 kb on + strand, within BACOVA_03443 at 182.188 kb on - strand, within BACOVA_03443 at 182.281 kb on + strand, within BACOVA_03443 at 182.281 kb on + strand, within BACOVA_03443 at 182.281 kb on + strand, within BACOVA_03443 at 182.282 kb on - strand, within BACOVA_03443 at 182.282 kb on - strand, within BACOVA_03443 at 182.330 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.335 kb on - strand, within BACOVA_03443 at 182.335 kb on - strand, within BACOVA_03443 at 182.368 kb on - strand, within BACOVA_03443 at 182.368 kb on - strand, within BACOVA_03443 at 182.375 kb on + strand, within BACOVA_03443 at 182.401 kb on - strand, within BACOVA_03443 at 182.428 kb on - strand, within BACOVA_03443 at 182.428 kb on - strand, within BACOVA_03443 at 182.536 kb on + strand, within BACOVA_03443 at 182.536 kb on + strand, within BACOVA_03443 at 182.537 kb on - strand, within BACOVA_03443 at 182.548 kb on - strand, within BACOVA_03443 at 182.550 kb on + strand, within BACOVA_03443 at 182.551 kb on - strand, within BACOVA_03443 at 182.556 kb on + strand, within BACOVA_03443 at 182.581 kb on - strand, within BACOVA_03443 at 182.581 kb on - strand, within BACOVA_03443 at 182.581 kb on - strand, within BACOVA_03443 at 182.582 kb on + strand, within BACOVA_03443 at 182.588 kb on + strand, within BACOVA_03443 at 182.588 kb on + strand, within BACOVA_03443 at 182.589 kb on - strand, within BACOVA_03443 at 182.590 kb on + strand, within BACOVA_03443 at 182.591 kb on - strand, within BACOVA_03443 at 182.634 kb on + strand, within BACOVA_03443 at 182.664 kb on - strand, within BACOVA_03443 at 182.722 kb on - strand, within BACOVA_03443 at 182.722 kb on - strand, within BACOVA_03443 at 182.737 kb on - strand, within BACOVA_03443 at 182.740 kb on + strand, within BACOVA_03443 at 182.741 kb on - strand, within BACOVA_03443 at 182.742 kb on + strand, within BACOVA_03443 at 182.743 kb on - strand, within BACOVA_03443 at 182.745 kb on - strand, within BACOVA_03443 at 182.782 kb on - strand at 182.846 kb on + strand at 182.868 kb on + strand at 182.868 kb on + strand at 182.869 kb on - strand at 182.904 kb on - strand at 182.920 kb on + strand at 182.931 kb on + strand at 182.943 kb on + strand at 182.956 kb on + strand at 182.957 kb on - strand at 183.019 kb on - strand at 183.028 kb on + strand at 183.028 kb on + strand at 183.029 kb on - strand at 183.064 kb on - strand at 183.068 kb on - strand at 183.070 kb on - strand at 183.079 kb on - strand at 183.094 kb on + strand at 183.099 kb on - strand at 183.121 kb on + strand at 183.125 kb on - strand at 183.126 kb on + strand at 183.129 kb on + strand at 183.130 kb on - strand at 183.193 kb on - strand at 183.193 kb on - strand at 183.229 kb on + strand at 183.232 kb on + strand at 183.236 kb on + strand at 183.237 kb on - strand at 183.264 kb on - strand at 183.269 kb on + strand at 183.269 kb on + strand at 183.270 kb on - strand at 183.270 kb on - strand at 183.272 kb on - strand at 183.337 kb on + strand, within BACOVA_03444 at 183.337 kb on + strand, within BACOVA_03444 at 183.338 kb on - strand, within BACOVA_03444 at 183.338 kb on - strand, within BACOVA_03444 at 183.341 kb on + strand, within BACOVA_03444 at 183.341 kb on + strand, within BACOVA_03444 at 183.341 kb on + strand, within BACOVA_03444 at 183.342 kb on - strand, within BACOVA_03444 at 183.342 kb on - strand, within BACOVA_03444 at 183.438 kb on - strand, within BACOVA_03444 at 183.461 kb on + strand, within BACOVA_03444 at 183.462 kb on - strand, within BACOVA_03444 at 183.561 kb on - strand, within BACOVA_03444 at 183.564 kb on - strand, within BACOVA_03444 at 183.567 kb on - strand, within BACOVA_03444 at 183.567 kb on - strand, within BACOVA_03444 at 183.578 kb on + strand, within BACOVA_03444 at 183.579 kb on - strand, within BACOVA_03444 at 183.619 kb on + strand, within BACOVA_03444 at 183.770 kb on + strand, within BACOVA_03444 at 183.808 kb on + strand, within BACOVA_03444 at 183.809 kb on - strand, within BACOVA_03444 at 183.809 kb on - strand, within BACOVA_03444 at 183.809 kb on - strand, within BACOVA_03444 at 183.821 kb on - strand, within BACOVA_03444 at 183.831 kb on - strand, within BACOVA_03444 at 183.921 kb on - strand, within BACOVA_03444 at 183.982 kb on - strand, within BACOVA_03444 at 184.030 kb on + strand, within BACOVA_03444 at 184.088 kb on + strand, within BACOVA_03444 at 184.088 kb on + strand, within BACOVA_03444 at 184.089 kb on - strand, within BACOVA_03444 at 184.091 kb on - strand, within BACOVA_03444 at 184.091 kb on - strand, within BACOVA_03444 at 184.091 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.104 kb on + strand, within BACOVA_03444 at 184.104 kb on + strand, within BACOVA_03444 at 184.105 kb on - strand, within BACOVA_03444 at 184.109 kb on + strand, within BACOVA_03444 at 184.109 kb on + strand, within BACOVA_03444 at 184.110 kb on - strand, within BACOVA_03444 at 184.110 kb on - strand, within BACOVA_03444 at 184.123 kb on + strand, within BACOVA_03444 at 184.132 kb on + strand, within BACOVA_03444 at 184.162 kb on + strand, within BACOVA_03444 at 184.188 kb on - strand, within BACOVA_03444 at 184.193 kb on + strand, within BACOVA_03444 at 184.238 kb on - strand, within BACOVA_03444 at 184.299 kb on + strand, within BACOVA_03444 at 184.324 kb on + strand, within BACOVA_03444 at 184.394 kb on + strand, within BACOVA_03444 at 184.395 kb on - strand, within BACOVA_03444 at 184.395 kb on - strand, within BACOVA_03444 at 184.395 kb on - strand, within BACOVA_03444 at 184.512 kb on - strand, within BACOVA_03444 at 184.514 kb on + strand, within BACOVA_03444 at 184.514 kb on + strand, within BACOVA_03444 at 184.563 kb on + strand, within BACOVA_03444 at 184.564 kb on - strand, within BACOVA_03444 at 184.595 kb on - strand, within BACOVA_03444 at 184.595 kb on - strand, within BACOVA_03444 at 184.642 kb on + strand, within BACOVA_03444 at 184.664 kb on - strand, within BACOVA_03444 at 184.724 kb on + strand, within BACOVA_03444 at 184.724 kb on + strand, within BACOVA_03444 at 184.724 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.738 kb on + strand, within BACOVA_03444 at 184.738 kb on + strand, within BACOVA_03444 at 184.739 kb on - strand, within BACOVA_03444 at 184.851 kb on - strand at 184.876 kb on + strand at 184.877 kb on - strand at 184.881 kb on + strand at 184.881 kb on + strand at 184.881 kb on + strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.933 kb on + strand at 184.934 kb on - strand at 184.964 kb on + strand at 184.973 kb on + strand at 184.973 kb on + strand at 184.977 kb on - strand at 184.991 kb on + strand at 184.991 kb on + strand at 184.992 kb on - strand at 184.999 kb on + strand at 185.083 kb on + strand at 185.084 kb on - strand at 185.086 kb on - strand at 185.086 kb on - strand at 185.102 kb on + strand, within BACOVA_03445 at 185.102 kb on + strand, within BACOVA_03445 at 185.103 kb on - strand, within BACOVA_03445 at 185.128 kb on + strand, within BACOVA_03445 at 185.128 kb on + strand, within BACOVA_03445 at 185.193 kb on - strand, within BACOVA_03445 at 185.197 kb on - strand, within BACOVA_03445 at 185.231 kb on + strand, within BACOVA_03445 at 185.236 kb on - strand, within BACOVA_03445 at 185.261 kb on + strand, within BACOVA_03445 at 185.266 kb on + strand, within BACOVA_03445 at 185.267 kb on - strand, within BACOVA_03445 at 185.296 kb on + strand, within BACOVA_03445 at 185.319 kb on - strand, within BACOVA_03445 at 185.353 kb on + strand, within BACOVA_03445 at 185.354 kb on - strand, within BACOVA_03445 at 185.355 kb on + strand, within BACOVA_03445 at 185.396 kb on + strand, within BACOVA_03445 at 185.410 kb on - strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.455 kb on - strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.538 kb on - strand, within BACOVA_03445 at 185.643 kb on + strand, within BACOVA_03445 at 185.658 kb on + strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.719 kb on - strand, within BACOVA_03445 at 185.763 kb on + strand, within BACOVA_03445 at 185.815 kb on - strand, within BACOVA_03445 at 185.816 kb on + strand, within BACOVA_03445 at 185.817 kb on - strand, within BACOVA_03445 at 185.826 kb on - strand, within BACOVA_03445 at 185.870 kb on + strand, within BACOVA_03445 at 185.914 kb on + strand, within BACOVA_03445
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 182,112 + BACOVA_03443 0.69 +0.4 182,115 - BACOVA_03443 0.70 +0.9 182,121 + BACOVA_03443 0.70 -1.3 182,139 + BACOVA_03443 0.70 -0.7 182,148 + BACOVA_03443 0.71 +0.6 182,174 + BACOVA_03443 0.71 -1.3 182,174 + BACOVA_03443 0.71 +0.5 182,181 + BACOVA_03443 0.72 -1.6 182,188 - BACOVA_03443 0.72 +0.0 182,281 + BACOVA_03443 0.75 -1.1 182,281 + BACOVA_03443 0.75 -0.7 182,281 + BACOVA_03443 0.75 -1.4 182,282 - BACOVA_03443 0.75 +0.5 182,282 - BACOVA_03443 0.75 -1.4 182,330 + BACOVA_03443 0.76 -1.9 182,334 + BACOVA_03443 0.76 +1.2 182,334 + BACOVA_03443 0.76 -0.7 182,334 + BACOVA_03443 0.76 +1.0 182,334 + BACOVA_03443 0.76 -0.4 182,334 + BACOVA_03443 0.76 +2.0 182,335 - BACOVA_03443 0.76 -0.8 182,335 - BACOVA_03443 0.76 +1.4 182,368 - BACOVA_03443 0.77 -0.2 182,368 - BACOVA_03443 0.77 -1.1 182,375 + BACOVA_03443 0.78 +0.2 182,401 - BACOVA_03443 0.78 +0.5 182,428 - BACOVA_03443 0.79 -0.1 182,428 - BACOVA_03443 0.79 -1.1 182,536 + BACOVA_03443 0.83 -0.1 182,536 + BACOVA_03443 0.83 -0.4 182,537 - BACOVA_03443 0.83 +1.3 182,548 - BACOVA_03443 0.83 -1.4 182,550 + BACOVA_03443 0.83 -1.8 182,551 - BACOVA_03443 0.83 +0.6 182,556 + BACOVA_03443 0.83 +1.6 182,581 - BACOVA_03443 0.84 +0.3 182,581 - BACOVA_03443 0.84 +0.7 182,581 - BACOVA_03443 0.84 -0.2 182,582 + BACOVA_03443 0.84 -0.9 182,588 + BACOVA_03443 0.84 -0.0 182,588 + BACOVA_03443 0.84 +0.6 182,589 - BACOVA_03443 0.84 +0.6 182,590 + BACOVA_03443 0.84 +3.9 182,591 - BACOVA_03443 0.84 -0.5 182,634 + BACOVA_03443 0.86 -1.3 182,664 - BACOVA_03443 0.87 +0.1 182,722 - BACOVA_03443 0.88 -1.6 182,722 - BACOVA_03443 0.88 -1.2 182,737 - BACOVA_03443 0.89 -1.8 182,740 + BACOVA_03443 0.89 -0.5 182,741 - BACOVA_03443 0.89 -0.2 182,742 + BACOVA_03443 0.89 -1.3 182,743 - BACOVA_03443 0.89 -0.5 182,745 - BACOVA_03443 0.89 +0.2 182,782 - +6.0 182,846 + +0.7 182,868 + -1.4 182,868 + +1.4 182,869 - -0.2 182,904 - +0.5 182,920 + +0.4 182,931 + -0.8 182,943 + +1.4 182,956 + +1.4 182,957 - -1.1 183,019 - +0.4 183,028 + -1.2 183,028 + +2.7 183,029 - -1.1 183,064 - -1.0 183,068 - -0.8 183,070 - -2.5 183,079 - -1.0 183,094 + -0.1 183,099 - +1.5 183,121 + -1.1 183,125 - -1.6 183,126 + -0.4 183,129 + +0.7 183,130 - -1.3 183,193 - -2.3 183,193 - +0.4 183,229 + -0.5 183,232 + -2.0 183,236 + +0.3 183,237 - +0.3 183,264 - -0.9 183,269 + -2.3 183,269 + +0.4 183,270 - -1.6 183,270 - -2.0 183,272 - -0.4 183,337 + BACOVA_03444 0.12 +1.7 183,337 + BACOVA_03444 0.12 -2.2 183,338 - BACOVA_03444 0.12 +0.2 183,338 - BACOVA_03444 0.12 -0.3 183,341 + BACOVA_03444 0.12 +0.3 183,341 + BACOVA_03444 0.12 +0.9 183,341 + BACOVA_03444 0.12 -0.9 183,342 - BACOVA_03444 0.12 +1.6 183,342 - BACOVA_03444 0.12 -3.2 183,438 - BACOVA_03444 0.18 -1.1 183,461 + BACOVA_03444 0.19 +0.6 183,462 - BACOVA_03444 0.19 -0.3 183,561 - BACOVA_03444 0.24 +0.1 183,564 - BACOVA_03444 0.24 +1.2 183,567 - BACOVA_03444 0.25 -1.7 183,567 - BACOVA_03444 0.25 -0.1 183,578 + BACOVA_03444 0.25 +0.9 183,579 - BACOVA_03444 0.25 -0.0 183,619 + BACOVA_03444 0.27 -0.5 183,770 + BACOVA_03444 0.36 -0.7 183,808 + BACOVA_03444 0.38 +0.6 183,809 - BACOVA_03444 0.38 -1.0 183,809 - BACOVA_03444 0.38 +0.9 183,809 - BACOVA_03444 0.38 +0.0 183,821 - BACOVA_03444 0.38 -0.9 183,831 - BACOVA_03444 0.39 -1.3 183,921 - BACOVA_03444 0.44 -1.0 183,982 - BACOVA_03444 0.47 -0.5 184,030 + BACOVA_03444 0.50 +0.5 184,088 + BACOVA_03444 0.53 +0.7 184,088 + BACOVA_03444 0.53 -2.7 184,089 - BACOVA_03444 0.53 -2.6 184,091 - BACOVA_03444 0.53 -0.6 184,091 - BACOVA_03444 0.53 +0.3 184,091 - BACOVA_03444 0.53 -0.8 184,101 - BACOVA_03444 0.53 -0.7 184,101 - BACOVA_03444 0.53 +0.2 184,101 - BACOVA_03444 0.53 -0.3 184,101 - BACOVA_03444 0.53 +0.3 184,104 + BACOVA_03444 0.54 -0.3 184,104 + BACOVA_03444 0.54 +0.6 184,105 - BACOVA_03444 0.54 -0.4 184,109 + BACOVA_03444 0.54 -0.2 184,109 + BACOVA_03444 0.54 +0.6 184,110 - BACOVA_03444 0.54 -0.1 184,110 - BACOVA_03444 0.54 -1.6 184,123 + BACOVA_03444 0.55 +1.3 184,132 + BACOVA_03444 0.55 -0.2 184,162 + BACOVA_03444 0.57 +0.2 184,188 - BACOVA_03444 0.58 +1.6 184,193 + BACOVA_03444 0.58 +0.4 184,238 - BACOVA_03444 0.61 -1.2 184,299 + BACOVA_03444 0.64 -1.2 184,324 + BACOVA_03444 0.65 +0.2 184,394 + BACOVA_03444 0.69 +0.7 184,395 - BACOVA_03444 0.69 +1.9 184,395 - BACOVA_03444 0.69 -0.5 184,395 - BACOVA_03444 0.69 -1.7 184,512 - BACOVA_03444 0.75 -1.8 184,514 + BACOVA_03444 0.76 +1.6 184,514 + BACOVA_03444 0.76 -1.0 184,563 + BACOVA_03444 0.78 +1.4 184,564 - BACOVA_03444 0.78 -0.5 184,595 - BACOVA_03444 0.80 -0.3 184,595 - BACOVA_03444 0.80 -1.9 184,642 + BACOVA_03444 0.82 +0.3 184,664 - BACOVA_03444 0.84 +1.5 184,724 + BACOVA_03444 0.87 +2.3 184,724 + BACOVA_03444 0.87 -0.3 184,724 + BACOVA_03444 0.87 -0.6 184,730 + BACOVA_03444 0.87 +0.2 184,730 + BACOVA_03444 0.87 -0.2 184,730 + BACOVA_03444 0.87 +0.7 184,730 + BACOVA_03444 0.87 +0.1 184,738 + BACOVA_03444 0.88 -1.3 184,738 + BACOVA_03444 0.88 +1.7 184,739 - BACOVA_03444 0.88 -0.0 184,851 - -2.1 184,876 + +1.5 184,877 - +0.3 184,881 + +1.2 184,881 + -0.1 184,881 + -1.1 184,882 - -1.0 184,882 - -1.4 184,933 + -1.1 184,934 - +0.1 184,964 + -1.0 184,973 + -0.3 184,973 + -0.7 184,977 - +0.5 184,991 + -1.8 184,991 + -0.3 184,992 - -0.3 184,999 + -0.2 185,083 + -0.1 185,084 - -0.3 185,086 - -1.1 185,086 - -0.7 185,102 + BACOVA_03445 0.11 -1.6 185,102 + BACOVA_03445 0.11 +1.7 185,103 - BACOVA_03445 0.11 -0.3 185,128 + BACOVA_03445 0.13 +1.7 185,128 + BACOVA_03445 0.13 -0.5 185,193 - BACOVA_03445 0.18 -3.0 185,197 - BACOVA_03445 0.18 -0.0 185,231 + BACOVA_03445 0.20 -2.1 185,236 - BACOVA_03445 0.21 -2.0 185,261 + BACOVA_03445 0.22 -1.1 185,266 + BACOVA_03445 0.23 -0.2 185,267 - BACOVA_03445 0.23 +0.6 185,296 + BACOVA_03445 0.25 +0.4 185,319 - BACOVA_03445 0.27 +1.7 185,353 + BACOVA_03445 0.29 -0.3 185,354 - BACOVA_03445 0.29 -0.8 185,355 + BACOVA_03445 0.29 -0.6 185,396 + BACOVA_03445 0.32 -0.5 185,410 - BACOVA_03445 0.33 +0.4 185,446 + BACOVA_03445 0.36 +1.0 185,446 + BACOVA_03445 0.36 -0.7 185,455 - BACOVA_03445 0.37 +0.5 185,517 + BACOVA_03445 0.41 +0.1 185,517 + BACOVA_03445 0.41 +0.7 185,538 - BACOVA_03445 0.43 +1.2 185,643 + BACOVA_03445 0.50 -0.2 185,658 + BACOVA_03445 0.51 -1.0 185,661 - BACOVA_03445 0.51 -0.4 185,661 - BACOVA_03445 0.51 +0.5 185,718 + BACOVA_03445 0.56 +1.4 185,718 + BACOVA_03445 0.56 +1.0 185,718 + BACOVA_03445 0.56 -1.2 185,719 - BACOVA_03445 0.56 -1.0 185,763 + BACOVA_03445 0.59 -0.6 185,815 - BACOVA_03445 0.63 -2.2 185,816 + BACOVA_03445 0.63 -0.9 185,817 - BACOVA_03445 0.63 -0.5 185,826 - BACOVA_03445 0.63 -0.9 185,870 + BACOVA_03445 0.67 -1.9 185,914 + BACOVA_03445 0.70 +2.2
Or see this region's nucleotide sequence