Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03341 and BACOVA_03342 are separated by 73 nucleotides BACOVA_03342 and BACOVA_03343 overlap by 8 nucleotides
BACOVA_03341: BACOVA_03341 - glycosyl hydrolase family 76, at 34,424 to 35,746
_03341
BACOVA_03342: BACOVA_03342 - hypothetical protein, at 35,820 to 36,914
_03342
BACOVA_03343: BACOVA_03343 - hypothetical protein, at 36,907 to 38,403
_03343
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 34.828 kb on + strand, within BACOVA_03341 at 34.832 kb on - strand, within BACOVA_03341 at 34.852 kb on + strand, within BACOVA_03341 at 34.857 kb on - strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.923 kb on - strand, within BACOVA_03341 at 34.956 kb on + strand, within BACOVA_03341 at 34.962 kb on - strand, within BACOVA_03341 at 34.995 kb on - strand, within BACOVA_03341 at 35.026 kb on + strand, within BACOVA_03341 at 35.027 kb on - strand, within BACOVA_03341 at 35.048 kb on - strand, within BACOVA_03341 at 35.083 kb on + strand, within BACOVA_03341 at 35.084 kb on - strand, within BACOVA_03341 at 35.133 kb on - strand, within BACOVA_03341 at 35.146 kb on + strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.192 kb on + strand, within BACOVA_03341 at 35.234 kb on + strand, within BACOVA_03341 at 35.353 kb on - strand, within BACOVA_03341 at 35.385 kb on + strand, within BACOVA_03341 at 35.393 kb on + strand, within BACOVA_03341 at 35.395 kb on + strand, within BACOVA_03341 at 35.474 kb on + strand, within BACOVA_03341 at 35.513 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.580 kb on + strand, within BACOVA_03341 at 35.597 kb on - strand, within BACOVA_03341 at 35.603 kb on - strand, within BACOVA_03341 at 35.617 kb on + strand at 35.635 kb on + strand at 35.654 kb on + strand at 35.660 kb on - strand at 35.670 kb on + strand at 35.671 kb on - strand at 35.680 kb on + strand at 35.680 kb on + strand at 35.681 kb on - strand at 35.681 kb on - strand at 35.693 kb on + strand at 35.693 kb on + strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.741 kb on - strand at 35.770 kb on + strand at 35.777 kb on + strand at 35.785 kb on - strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.815 kb on + strand at 35.871 kb on + strand at 35.874 kb on - strand at 35.897 kb on + strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.901 kb on + strand at 35.902 kb on - strand at 35.902 kb on - strand at 35.969 kb on + strand, within BACOVA_03342 at 35.969 kb on + strand, within BACOVA_03342 at 35.971 kb on - strand, within BACOVA_03342 at 36.019 kb on + strand, within BACOVA_03342 at 36.041 kb on - strand, within BACOVA_03342 at 36.055 kb on - strand, within BACOVA_03342 at 36.117 kb on - strand, within BACOVA_03342 at 36.208 kb on - strand, within BACOVA_03342 at 36.224 kb on + strand, within BACOVA_03342 at 36.225 kb on - strand, within BACOVA_03342 at 36.235 kb on - strand, within BACOVA_03342 at 36.319 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.359 kb on + strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.402 kb on + strand, within BACOVA_03342 at 36.495 kb on + strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.594 kb on + strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.597 kb on - strand, within BACOVA_03342 at 36.618 kb on + strand, within BACOVA_03342 at 36.620 kb on + strand, within BACOVA_03342 at 36.649 kb on - strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.651 kb on - strand, within BACOVA_03342 at 36.665 kb on + strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.739 kb on - strand, within BACOVA_03342 at 36.756 kb on - strand, within BACOVA_03342 at 36.844 kb on + strand at 36.845 kb on - strand at 36.847 kb on + strand at 36.847 kb on + strand at 36.888 kb on + strand at 36.889 kb on - strand at 36.902 kb on + strand at 36.913 kb on - strand at 36.920 kb on + strand at 36.952 kb on - strand at 36.952 kb on - strand at 36.954 kb on + strand at 36.954 kb on + strand at 37.000 kb on - strand at 37.013 kb on + strand at 37.014 kb on - strand at 37.045 kb on + strand at 37.056 kb on + strand at 37.064 kb on + strand, within BACOVA_03343 at 37.064 kb on + strand, within BACOVA_03343 at 37.065 kb on - strand, within BACOVA_03343 at 37.065 kb on - strand, within BACOVA_03343 at 37.100 kb on - strand, within BACOVA_03343 at 37.142 kb on - strand, within BACOVA_03343 at 37.161 kb on + strand, within BACOVA_03343 at 37.162 kb on - strand, within BACOVA_03343 at 37.162 kb on - strand, within BACOVA_03343 at 37.164 kb on - strand, within BACOVA_03343 at 37.167 kb on - strand, within BACOVA_03343 at 37.176 kb on + strand, within BACOVA_03343 at 37.177 kb on - strand, within BACOVA_03343 at 37.177 kb on - strand, within BACOVA_03343 at 37.179 kb on + strand, within BACOVA_03343 at 37.198 kb on - strand, within BACOVA_03343 at 37.263 kb on - strand, within BACOVA_03343 at 37.327 kb on + strand, within BACOVA_03343 at 37.329 kb on + strand, within BACOVA_03343 at 37.330 kb on - strand, within BACOVA_03343 at 37.330 kb on - strand, within BACOVA_03343 at 37.449 kb on + strand, within BACOVA_03343 at 37.501 kb on - strand, within BACOVA_03343 at 37.501 kb on - strand, within BACOVA_03343 at 37.516 kb on + strand, within BACOVA_03343 at 37.586 kb on + strand, within BACOVA_03343 at 37.635 kb on - strand, within BACOVA_03343 at 37.647 kb on + strand, within BACOVA_03343 at 37.783 kb on + strand, within BACOVA_03343 at 37.783 kb on + strand, within BACOVA_03343 at 37.813 kb on - strand, within BACOVA_03343 at 37.813 kb on - strand, within BACOVA_03343 at 37.857 kb on + strand, within BACOVA_03343
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 34,828 + BACOVA_03341 0.31 -0.5 34,832 - BACOVA_03341 0.31 -0.5 34,852 + BACOVA_03341 0.32 -1.9 34,857 - BACOVA_03341 0.33 -0.7 34,866 + BACOVA_03341 0.33 -0.3 34,866 + BACOVA_03341 0.33 -0.9 34,867 - BACOVA_03341 0.33 +2.5 34,867 - BACOVA_03341 0.33 -1.5 34,923 - BACOVA_03341 0.38 +0.3 34,956 + BACOVA_03341 0.40 -1.3 34,962 - BACOVA_03341 0.41 -0.3 34,995 - BACOVA_03341 0.43 -2.1 35,026 + BACOVA_03341 0.46 -1.5 35,027 - BACOVA_03341 0.46 -0.8 35,048 - BACOVA_03341 0.47 -1.3 35,083 + BACOVA_03341 0.50 +0.2 35,084 - BACOVA_03341 0.50 -2.3 35,133 - BACOVA_03341 0.54 -1.4 35,146 + BACOVA_03341 0.55 -0.9 35,186 - BACOVA_03341 0.58 +0.2 35,186 - BACOVA_03341 0.58 -1.6 35,188 + BACOVA_03341 0.58 -0.8 35,188 + BACOVA_03341 0.58 -1.7 35,192 + BACOVA_03341 0.58 -0.8 35,234 + BACOVA_03341 0.61 -1.1 35,353 - BACOVA_03341 0.70 -1.0 35,385 + BACOVA_03341 0.73 -1.1 35,393 + BACOVA_03341 0.73 +2.7 35,395 + BACOVA_03341 0.73 -0.7 35,474 + BACOVA_03341 0.79 -1.7 35,513 - BACOVA_03341 0.82 +0.4 35,538 - BACOVA_03341 0.84 +1.4 35,538 - BACOVA_03341 0.84 -0.1 35,538 - BACOVA_03341 0.84 +0.6 35,580 + BACOVA_03341 0.87 +2.2 35,597 - BACOVA_03341 0.89 -0.1 35,603 - BACOVA_03341 0.89 -0.8 35,617 + -0.8 35,635 + -0.2 35,654 + +0.4 35,660 - +0.5 35,670 + -1.5 35,671 - +1.2 35,680 + -1.7 35,680 + -0.3 35,681 - -1.3 35,681 - -1.1 35,693 + -0.2 35,693 + -1.4 35,694 - -1.0 35,694 - +0.3 35,694 - +2.2 35,694 - -0.2 35,741 - +0.3 35,770 + +1.2 35,777 + -1.8 35,785 - +2.2 35,808 + -1.3 35,808 + -0.1 35,808 + +0.5 35,815 + +0.1 35,871 + -0.6 35,874 - -0.5 35,897 + -3.3 35,898 - -0.3 35,898 - -0.6 35,898 - -1.2 35,901 + +0.5 35,902 - +1.6 35,902 - +0.7 35,969 + BACOVA_03342 0.14 -1.3 35,969 + BACOVA_03342 0.14 +0.0 35,971 - BACOVA_03342 0.14 +0.3 36,019 + BACOVA_03342 0.18 -1.9 36,041 - BACOVA_03342 0.20 -0.2 36,055 - BACOVA_03342 0.21 +0.0 36,117 - BACOVA_03342 0.27 -0.6 36,208 - BACOVA_03342 0.35 -0.9 36,224 + BACOVA_03342 0.37 +0.9 36,225 - BACOVA_03342 0.37 +1.9 36,235 - BACOVA_03342 0.38 -0.4 36,319 - BACOVA_03342 0.46 +1.6 36,337 - BACOVA_03342 0.47 +0.2 36,337 - BACOVA_03342 0.47 -0.8 36,359 + BACOVA_03342 0.49 -0.9 36,376 - BACOVA_03342 0.51 +1.4 36,376 - BACOVA_03342 0.51 -0.4 36,383 + BACOVA_03342 0.51 +0.9 36,383 + BACOVA_03342 0.51 +0.1 36,402 + BACOVA_03342 0.53 -1.3 36,495 + BACOVA_03342 0.62 -2.9 36,496 - BACOVA_03342 0.62 +0.2 36,496 - BACOVA_03342 0.62 -1.7 36,594 + BACOVA_03342 0.71 +0.2 36,595 - BACOVA_03342 0.71 +0.8 36,595 - BACOVA_03342 0.71 +0.2 36,597 - BACOVA_03342 0.71 -0.6 36,618 + BACOVA_03342 0.73 -1.1 36,620 + BACOVA_03342 0.73 +0.0 36,649 - BACOVA_03342 0.76 -0.2 36,650 + BACOVA_03342 0.76 -0.4 36,650 + BACOVA_03342 0.76 -0.4 36,651 - BACOVA_03342 0.76 -0.6 36,665 + BACOVA_03342 0.77 -0.1 36,666 - BACOVA_03342 0.77 -0.6 36,666 - BACOVA_03342 0.77 +3.0 36,666 - BACOVA_03342 0.77 -0.6 36,739 - BACOVA_03342 0.84 -0.6 36,756 - BACOVA_03342 0.85 -0.1 36,844 + -0.7 36,845 - +0.2 36,847 + -0.8 36,847 + -0.7 36,888 + -2.3 36,889 - +0.9 36,902 + -1.1 36,913 - -1.0 36,920 + -1.6 36,952 - -0.1 36,952 - -0.1 36,954 + +0.4 36,954 + -1.3 37,000 - -1.0 37,013 + -1.3 37,014 - -0.5 37,045 + -0.1 37,056 + -0.8 37,064 + BACOVA_03343 0.10 +0.2 37,064 + BACOVA_03343 0.10 -1.2 37,065 - BACOVA_03343 0.11 -0.2 37,065 - BACOVA_03343 0.11 +0.6 37,100 - BACOVA_03343 0.13 +2.7 37,142 - BACOVA_03343 0.16 -0.7 37,161 + BACOVA_03343 0.17 +0.2 37,162 - BACOVA_03343 0.17 -0.2 37,162 - BACOVA_03343 0.17 -0.8 37,164 - BACOVA_03343 0.17 -0.8 37,167 - BACOVA_03343 0.17 -0.1 37,176 + BACOVA_03343 0.18 -0.3 37,177 - BACOVA_03343 0.18 -1.5 37,177 - BACOVA_03343 0.18 -1.0 37,179 + BACOVA_03343 0.18 +0.2 37,198 - BACOVA_03343 0.19 -2.2 37,263 - BACOVA_03343 0.24 -0.4 37,327 + BACOVA_03343 0.28 -1.5 37,329 + BACOVA_03343 0.28 -1.3 37,330 - BACOVA_03343 0.28 -2.0 37,330 - BACOVA_03343 0.28 -2.2 37,449 + BACOVA_03343 0.36 -0.3 37,501 - BACOVA_03343 0.40 -0.2 37,501 - BACOVA_03343 0.40 +0.8 37,516 + BACOVA_03343 0.41 +0.6 37,586 + BACOVA_03343 0.45 -1.1 37,635 - BACOVA_03343 0.49 -0.7 37,647 + BACOVA_03343 0.49 +0.2 37,783 + BACOVA_03343 0.59 +0.2 37,783 + BACOVA_03343 0.59 -2.5 37,813 - BACOVA_03343 0.61 -0.1 37,813 - BACOVA_03343 0.61 +1.2 37,857 + BACOVA_03343 0.63 -0.6
Or see this region's nucleotide sequence