Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03340 and BACOVA_03341 are separated by 23 nucleotides BACOVA_03341 and BACOVA_03342 are separated by 73 nucleotides
BACOVA_03340: BACOVA_03340 - SusD family protein, at 32,481 to 34,400
_03340
BACOVA_03341: BACOVA_03341 - glycosyl hydrolase family 76, at 34,424 to 35,746
_03341
BACOVA_03342: BACOVA_03342 - hypothetical protein, at 35,820 to 36,914
_03342
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 33.443 kb on - strand, within BACOVA_03340 at 33.539 kb on + strand, within BACOVA_03340 at 33.561 kb on + strand, within BACOVA_03340 at 33.561 kb on + strand, within BACOVA_03340 at 33.561 kb on + strand, within BACOVA_03340 at 33.562 kb on - strand, within BACOVA_03340 at 33.562 kb on - strand, within BACOVA_03340 at 33.563 kb on - strand, within BACOVA_03340 at 33.564 kb on - strand, within BACOVA_03340 at 33.564 kb on - strand, within BACOVA_03340 at 33.573 kb on - strand, within BACOVA_03340 at 33.601 kb on + strand, within BACOVA_03340 at 33.602 kb on - strand, within BACOVA_03340 at 33.609 kb on + strand, within BACOVA_03340 at 33.610 kb on - strand, within BACOVA_03340 at 33.635 kb on + strand, within BACOVA_03340 at 33.647 kb on + strand, within BACOVA_03340 at 33.691 kb on - strand, within BACOVA_03340 at 33.694 kb on + strand, within BACOVA_03340 at 33.710 kb on + strand, within BACOVA_03340 at 33.711 kb on - strand, within BACOVA_03340 at 33.738 kb on - strand, within BACOVA_03340 at 33.743 kb on - strand, within BACOVA_03340 at 33.743 kb on - strand, within BACOVA_03340 at 33.744 kb on + strand, within BACOVA_03340 at 33.744 kb on + strand, within BACOVA_03340 at 33.745 kb on - strand, within BACOVA_03340 at 33.771 kb on + strand, within BACOVA_03340 at 33.771 kb on + strand, within BACOVA_03340 at 33.772 kb on - strand, within BACOVA_03340 at 33.772 kb on - strand, within BACOVA_03340 at 33.772 kb on - strand, within BACOVA_03340 at 33.800 kb on - strand, within BACOVA_03340 at 33.800 kb on - strand, within BACOVA_03340 at 33.806 kb on + strand, within BACOVA_03340 at 33.816 kb on - strand, within BACOVA_03340 at 33.849 kb on + strand, within BACOVA_03340 at 33.850 kb on - strand, within BACOVA_03340 at 33.850 kb on - strand, within BACOVA_03340 at 33.850 kb on - strand, within BACOVA_03340 at 33.851 kb on + strand, within BACOVA_03340 at 33.851 kb on + strand, within BACOVA_03340 at 33.853 kb on + strand, within BACOVA_03340 at 33.854 kb on - strand, within BACOVA_03340 at 33.857 kb on - strand, within BACOVA_03340 at 33.867 kb on + strand, within BACOVA_03340 at 33.896 kb on + strand, within BACOVA_03340 at 33.908 kb on + strand, within BACOVA_03340 at 33.909 kb on - strand, within BACOVA_03340 at 33.909 kb on - strand, within BACOVA_03340 at 33.915 kb on - strand, within BACOVA_03340 at 33.921 kb on + strand, within BACOVA_03340 at 33.922 kb on - strand, within BACOVA_03340 at 33.993 kb on - strand, within BACOVA_03340 at 34.059 kb on + strand, within BACOVA_03340 at 34.059 kb on + strand, within BACOVA_03340 at 34.130 kb on + strand, within BACOVA_03340 at 34.131 kb on - strand, within BACOVA_03340 at 34.228 kb on + strand at 34.237 kb on - strand at 34.237 kb on - strand at 34.317 kb on - strand at 34.345 kb on + strand at 34.364 kb on + strand at 34.364 kb on + strand at 34.389 kb on - strand at 34.398 kb on + strand at 34.399 kb on - strand at 34.403 kb on - strand at 34.410 kb on - strand at 34.437 kb on - strand at 34.477 kb on + strand at 34.478 kb on - strand at 34.498 kb on + strand at 34.514 kb on + strand at 34.515 kb on - strand at 34.517 kb on - strand at 34.546 kb on + strand at 34.546 kb on + strand at 34.617 kb on - strand, within BACOVA_03341 at 34.635 kb on - strand, within BACOVA_03341 at 34.636 kb on + strand, within BACOVA_03341 at 34.637 kb on - strand, within BACOVA_03341 at 34.657 kb on + strand, within BACOVA_03341 at 34.716 kb on - strand, within BACOVA_03341 at 34.717 kb on + strand, within BACOVA_03341 at 34.717 kb on + strand, within BACOVA_03341 at 34.760 kb on + strand, within BACOVA_03341 at 34.761 kb on - strand, within BACOVA_03341 at 34.805 kb on + strand, within BACOVA_03341 at 34.805 kb on + strand, within BACOVA_03341 at 34.806 kb on - strand, within BACOVA_03341 at 34.828 kb on + strand, within BACOVA_03341 at 34.832 kb on - strand, within BACOVA_03341 at 34.852 kb on + strand, within BACOVA_03341 at 34.857 kb on - strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.923 kb on - strand, within BACOVA_03341 at 34.956 kb on + strand, within BACOVA_03341 at 34.962 kb on - strand, within BACOVA_03341 at 34.995 kb on - strand, within BACOVA_03341 at 35.026 kb on + strand, within BACOVA_03341 at 35.027 kb on - strand, within BACOVA_03341 at 35.048 kb on - strand, within BACOVA_03341 at 35.083 kb on + strand, within BACOVA_03341 at 35.084 kb on - strand, within BACOVA_03341 at 35.133 kb on - strand, within BACOVA_03341 at 35.146 kb on + strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.192 kb on + strand, within BACOVA_03341 at 35.234 kb on + strand, within BACOVA_03341 at 35.353 kb on - strand, within BACOVA_03341 at 35.385 kb on + strand, within BACOVA_03341 at 35.393 kb on + strand, within BACOVA_03341 at 35.395 kb on + strand, within BACOVA_03341 at 35.474 kb on + strand, within BACOVA_03341 at 35.513 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.580 kb on + strand, within BACOVA_03341 at 35.597 kb on - strand, within BACOVA_03341 at 35.603 kb on - strand, within BACOVA_03341 at 35.617 kb on + strand at 35.635 kb on + strand at 35.654 kb on + strand at 35.660 kb on - strand at 35.670 kb on + strand at 35.671 kb on - strand at 35.680 kb on + strand at 35.680 kb on + strand at 35.681 kb on - strand at 35.681 kb on - strand at 35.693 kb on + strand at 35.693 kb on + strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.741 kb on - strand at 35.770 kb on + strand at 35.777 kb on + strand at 35.785 kb on - strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.815 kb on + strand at 35.871 kb on + strand at 35.874 kb on - strand at 35.897 kb on + strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.901 kb on + strand at 35.902 kb on - strand at 35.902 kb on - strand at 35.969 kb on + strand, within BACOVA_03342 at 35.969 kb on + strand, within BACOVA_03342 at 35.971 kb on - strand, within BACOVA_03342 at 36.019 kb on + strand, within BACOVA_03342 at 36.041 kb on - strand, within BACOVA_03342 at 36.055 kb on - strand, within BACOVA_03342 at 36.117 kb on - strand, within BACOVA_03342 at 36.208 kb on - strand, within BACOVA_03342 at 36.224 kb on + strand, within BACOVA_03342 at 36.225 kb on - strand, within BACOVA_03342 at 36.235 kb on - strand, within BACOVA_03342 at 36.319 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.359 kb on + strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.402 kb on + strand, within BACOVA_03342 at 36.495 kb on + strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.594 kb on + strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.597 kb on - strand, within BACOVA_03342 at 36.618 kb on + strand, within BACOVA_03342 at 36.620 kb on + strand, within BACOVA_03342 at 36.649 kb on - strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.651 kb on - strand, within BACOVA_03342 at 36.665 kb on + strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.739 kb on - strand, within BACOVA_03342
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 33,443 - BACOVA_03340 0.50 +2.0 33,539 + BACOVA_03340 0.55 -0.3 33,561 + BACOVA_03340 0.56 -0.7 33,561 + BACOVA_03340 0.56 -1.0 33,561 + BACOVA_03340 0.56 -0.7 33,562 - BACOVA_03340 0.56 -0.0 33,562 - BACOVA_03340 0.56 -1.0 33,563 - BACOVA_03340 0.56 +0.6 33,564 - BACOVA_03340 0.56 -1.1 33,564 - BACOVA_03340 0.56 -0.3 33,573 - BACOVA_03340 0.57 +0.4 33,601 + BACOVA_03340 0.58 -1.1 33,602 - BACOVA_03340 0.58 -0.4 33,609 + BACOVA_03340 0.59 +0.3 33,610 - BACOVA_03340 0.59 -1.8 33,635 + BACOVA_03340 0.60 -0.3 33,647 + BACOVA_03340 0.61 -1.2 33,691 - BACOVA_03340 0.63 -0.2 33,694 + BACOVA_03340 0.63 -0.5 33,710 + BACOVA_03340 0.64 -2.0 33,711 - BACOVA_03340 0.64 -1.3 33,738 - BACOVA_03340 0.65 -0.8 33,743 - BACOVA_03340 0.66 +0.4 33,743 - BACOVA_03340 0.66 +0.1 33,744 + BACOVA_03340 0.66 +0.4 33,744 + BACOVA_03340 0.66 +0.2 33,745 - BACOVA_03340 0.66 -0.2 33,771 + BACOVA_03340 0.67 -0.3 33,771 + BACOVA_03340 0.67 +0.1 33,772 - BACOVA_03340 0.67 -1.0 33,772 - BACOVA_03340 0.67 +1.2 33,772 - BACOVA_03340 0.67 -1.2 33,800 - BACOVA_03340 0.69 -0.3 33,800 - BACOVA_03340 0.69 +0.6 33,806 + BACOVA_03340 0.69 +0.7 33,816 - BACOVA_03340 0.70 +1.3 33,849 + BACOVA_03340 0.71 -1.8 33,850 - BACOVA_03340 0.71 +1.7 33,850 - BACOVA_03340 0.71 -0.1 33,850 - BACOVA_03340 0.71 -2.5 33,851 + BACOVA_03340 0.71 -1.3 33,851 + BACOVA_03340 0.71 +1.0 33,853 + BACOVA_03340 0.71 -1.5 33,854 - BACOVA_03340 0.72 -0.6 33,857 - BACOVA_03340 0.72 -0.8 33,867 + BACOVA_03340 0.72 -0.8 33,896 + BACOVA_03340 0.74 -2.0 33,908 + BACOVA_03340 0.74 -1.9 33,909 - BACOVA_03340 0.74 +0.7 33,909 - BACOVA_03340 0.74 -0.8 33,915 - BACOVA_03340 0.75 -0.3 33,921 + BACOVA_03340 0.75 +0.2 33,922 - BACOVA_03340 0.75 +0.0 33,993 - BACOVA_03340 0.79 -0.4 34,059 + BACOVA_03340 0.82 -0.3 34,059 + BACOVA_03340 0.82 -0.9 34,130 + BACOVA_03340 0.86 -0.7 34,131 - BACOVA_03340 0.86 +0.9 34,228 + -1.3 34,237 - -2.6 34,237 - -0.9 34,317 - -2.1 34,345 + +0.2 34,364 + -1.3 34,364 + -0.3 34,389 - +0.3 34,398 + -0.1 34,399 - +0.3 34,403 - -1.0 34,410 - +0.7 34,437 - -0.2 34,477 + -1.3 34,478 - -0.7 34,498 + +0.0 34,514 + -1.7 34,515 - +1.5 34,517 - -1.8 34,546 + -0.1 34,546 + -0.1 34,617 - BACOVA_03341 0.15 -0.1 34,635 - BACOVA_03341 0.16 +1.4 34,636 + BACOVA_03341 0.16 -0.2 34,637 - BACOVA_03341 0.16 -1.5 34,657 + BACOVA_03341 0.18 -1.4 34,716 - BACOVA_03341 0.22 -0.8 34,717 + BACOVA_03341 0.22 +0.2 34,717 + BACOVA_03341 0.22 -2.5 34,760 + BACOVA_03341 0.25 +2.2 34,761 - BACOVA_03341 0.25 -1.5 34,805 + BACOVA_03341 0.29 -0.9 34,805 + BACOVA_03341 0.29 -0.2 34,806 - BACOVA_03341 0.29 +1.4 34,828 + BACOVA_03341 0.31 -0.5 34,832 - BACOVA_03341 0.31 -0.5 34,852 + BACOVA_03341 0.32 -1.9 34,857 - BACOVA_03341 0.33 -0.7 34,866 + BACOVA_03341 0.33 -0.3 34,866 + BACOVA_03341 0.33 -0.9 34,867 - BACOVA_03341 0.33 +2.5 34,867 - BACOVA_03341 0.33 -1.5 34,923 - BACOVA_03341 0.38 +0.3 34,956 + BACOVA_03341 0.40 -1.3 34,962 - BACOVA_03341 0.41 -0.3 34,995 - BACOVA_03341 0.43 -2.1 35,026 + BACOVA_03341 0.46 -1.5 35,027 - BACOVA_03341 0.46 -0.8 35,048 - BACOVA_03341 0.47 -1.3 35,083 + BACOVA_03341 0.50 +0.2 35,084 - BACOVA_03341 0.50 -2.3 35,133 - BACOVA_03341 0.54 -1.4 35,146 + BACOVA_03341 0.55 -0.9 35,186 - BACOVA_03341 0.58 +0.2 35,186 - BACOVA_03341 0.58 -1.6 35,188 + BACOVA_03341 0.58 -0.8 35,188 + BACOVA_03341 0.58 -1.7 35,192 + BACOVA_03341 0.58 -0.8 35,234 + BACOVA_03341 0.61 -1.1 35,353 - BACOVA_03341 0.70 -1.0 35,385 + BACOVA_03341 0.73 -1.1 35,393 + BACOVA_03341 0.73 +2.7 35,395 + BACOVA_03341 0.73 -0.7 35,474 + BACOVA_03341 0.79 -1.7 35,513 - BACOVA_03341 0.82 +0.4 35,538 - BACOVA_03341 0.84 +1.4 35,538 - BACOVA_03341 0.84 -0.1 35,538 - BACOVA_03341 0.84 +0.6 35,580 + BACOVA_03341 0.87 +2.2 35,597 - BACOVA_03341 0.89 -0.1 35,603 - BACOVA_03341 0.89 -0.8 35,617 + -0.8 35,635 + -0.2 35,654 + +0.4 35,660 - +0.5 35,670 + -1.5 35,671 - +1.2 35,680 + -1.7 35,680 + -0.3 35,681 - -1.3 35,681 - -1.1 35,693 + -0.2 35,693 + -1.4 35,694 - -1.0 35,694 - +0.3 35,694 - +2.2 35,694 - -0.2 35,741 - +0.3 35,770 + +1.2 35,777 + -1.8 35,785 - +2.2 35,808 + -1.3 35,808 + -0.1 35,808 + +0.5 35,815 + +0.1 35,871 + -0.6 35,874 - -0.5 35,897 + -3.3 35,898 - -0.3 35,898 - -0.6 35,898 - -1.2 35,901 + +0.5 35,902 - +1.6 35,902 - +0.7 35,969 + BACOVA_03342 0.14 -1.3 35,969 + BACOVA_03342 0.14 +0.0 35,971 - BACOVA_03342 0.14 +0.3 36,019 + BACOVA_03342 0.18 -1.9 36,041 - BACOVA_03342 0.20 -0.2 36,055 - BACOVA_03342 0.21 +0.0 36,117 - BACOVA_03342 0.27 -0.6 36,208 - BACOVA_03342 0.35 -0.9 36,224 + BACOVA_03342 0.37 +0.9 36,225 - BACOVA_03342 0.37 +1.9 36,235 - BACOVA_03342 0.38 -0.4 36,319 - BACOVA_03342 0.46 +1.6 36,337 - BACOVA_03342 0.47 +0.2 36,337 - BACOVA_03342 0.47 -0.8 36,359 + BACOVA_03342 0.49 -0.9 36,376 - BACOVA_03342 0.51 +1.4 36,376 - BACOVA_03342 0.51 -0.4 36,383 + BACOVA_03342 0.51 +0.9 36,383 + BACOVA_03342 0.51 +0.1 36,402 + BACOVA_03342 0.53 -1.3 36,495 + BACOVA_03342 0.62 -2.9 36,496 - BACOVA_03342 0.62 +0.2 36,496 - BACOVA_03342 0.62 -1.7 36,594 + BACOVA_03342 0.71 +0.2 36,595 - BACOVA_03342 0.71 +0.8 36,595 - BACOVA_03342 0.71 +0.2 36,597 - BACOVA_03342 0.71 -0.6 36,618 + BACOVA_03342 0.73 -1.1 36,620 + BACOVA_03342 0.73 +0.0 36,649 - BACOVA_03342 0.76 -0.2 36,650 + BACOVA_03342 0.76 -0.4 36,650 + BACOVA_03342 0.76 -0.4 36,651 - BACOVA_03342 0.76 -0.6 36,665 + BACOVA_03342 0.77 -0.1 36,666 - BACOVA_03342 0.77 -0.6 36,666 - BACOVA_03342 0.77 +3.0 36,666 - BACOVA_03342 0.77 -0.6 36,739 - BACOVA_03342 0.84 -0.6
Or see this region's nucleotide sequence