Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03061

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03060 and BACOVA_03061 are separated by 14 nucleotidesBACOVA_03061 and BACOVA_03062 are separated by 91 nucleotides BACOVA_03060: BACOVA_03060 - transcriptional regulator, AraC family, at 130,530 to 131,402 _03060 BACOVA_03061: BACOVA_03061 - hypothetical protein, at 131,417 to 131,581 _03061 BACOVA_03062: BACOVA_03062 - SusD family protein, at 131,673 to 133,511 _03062 Position (kb) 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 130.428 kb on - strandat 130.430 kb on - strandat 130.430 kb on - strandat 130.482 kb on - strandat 130.484 kb on + strandat 130.502 kb on + strandat 130.502 kb on + strandat 130.503 kb on - strandat 130.511 kb on + strandat 130.518 kb on - strandat 130.529 kb on + strandat 130.530 kb on - strandat 130.550 kb on - strandat 130.584 kb on + strandat 130.585 kb on - strandat 130.613 kb on + strandat 130.613 kb on + strandat 130.614 kb on - strandat 130.614 kb on - strandat 130.615 kb on + strandat 130.615 kb on + strandat 130.616 kb on - strandat 130.629 kb on - strand, within BACOVA_03060at 130.695 kb on - strand, within BACOVA_03060at 130.719 kb on - strand, within BACOVA_03060at 130.740 kb on + strand, within BACOVA_03060at 130.740 kb on + strand, within BACOVA_03060at 130.741 kb on - strand, within BACOVA_03060at 130.742 kb on + strand, within BACOVA_03060at 130.742 kb on + strand, within BACOVA_03060at 130.743 kb on - strand, within BACOVA_03060at 130.745 kb on + strand, within BACOVA_03060at 130.746 kb on - strand, within BACOVA_03060at 130.746 kb on - strand, within BACOVA_03060at 130.748 kb on + strand, within BACOVA_03060at 130.840 kb on - strand, within BACOVA_03060at 130.857 kb on - strand, within BACOVA_03060at 130.859 kb on - strand, within BACOVA_03060at 130.859 kb on - strand, within BACOVA_03060at 130.859 kb on - strand, within BACOVA_03060at 130.859 kb on - strand, within BACOVA_03060at 130.884 kb on - strand, within BACOVA_03060at 130.970 kb on + strand, within BACOVA_03060at 130.971 kb on - strand, within BACOVA_03060at 130.979 kb on + strand, within BACOVA_03060at 131.048 kb on + strand, within BACOVA_03060at 131.049 kb on - strand, within BACOVA_03060at 131.109 kb on - strand, within BACOVA_03060at 131.202 kb on - strand, within BACOVA_03060at 131.202 kb on - strand, within BACOVA_03060at 131.215 kb on + strand, within BACOVA_03060at 131.337 kb on + strandat 131.405 kb on - strandat 131.422 kb on + strandat 131.425 kb on + strandat 131.434 kb on + strand, within BACOVA_03061at 131.434 kb on + strand, within BACOVA_03061at 131.434 kb on + strand, within BACOVA_03061at 131.445 kb on + strand, within BACOVA_03061at 131.454 kb on + strand, within BACOVA_03061at 131.455 kb on - strand, within BACOVA_03061at 131.469 kb on + strand, within BACOVA_03061at 131.501 kb on + strand, within BACOVA_03061at 131.503 kb on + strand, within BACOVA_03061at 131.504 kb on - strand, within BACOVA_03061at 131.507 kb on + strand, within BACOVA_03061at 131.509 kb on + strand, within BACOVA_03061at 131.510 kb on - strand, within BACOVA_03061at 131.562 kb on + strand, within BACOVA_03061at 131.569 kb on + strandat 131.575 kb on + strandat 131.576 kb on - strandat 131.579 kb on + strandat 131.579 kb on + strandat 131.579 kb on + strandat 131.588 kb on + strandat 131.588 kb on + strandat 131.609 kb on + strandat 131.612 kb on + strandat 131.613 kb on - strandat 131.614 kb on + strandat 131.617 kb on + strandat 131.618 kb on - strandat 131.622 kb on + strandat 131.623 kb on - strandat 131.654 kb on + strandat 131.655 kb on - strandat 131.655 kb on - strandat 131.674 kb on + strandat 131.675 kb on - strandat 131.675 kb on - strandat 131.720 kb on + strandat 131.727 kb on - strandat 131.742 kb on + strandat 131.743 kb on - strandat 131.743 kb on - strandat 131.743 kb on - strandat 131.749 kb on + strandat 131.772 kb on + strandat 131.849 kb on - strandat 131.881 kb on - strand, within BACOVA_03062at 131.881 kb on - strand, within BACOVA_03062at 131.897 kb on + strand, within BACOVA_03062at 131.897 kb on + strand, within BACOVA_03062at 131.897 kb on + strand, within BACOVA_03062at 131.909 kb on + strand, within BACOVA_03062at 131.910 kb on - strand, within BACOVA_03062at 131.910 kb on - strand, within BACOVA_03062at 131.948 kb on + strand, within BACOVA_03062at 131.948 kb on + strand, within BACOVA_03062at 131.948 kb on + strand, within BACOVA_03062at 131.949 kb on - strand, within BACOVA_03062at 132.007 kb on + strand, within BACOVA_03062at 132.008 kb on - strand, within BACOVA_03062at 132.030 kb on - strand, within BACOVA_03062at 132.076 kb on - strand, within BACOVA_03062at 132.076 kb on - strand, within BACOVA_03062at 132.080 kb on - strand, within BACOVA_03062at 132.083 kb on - strand, within BACOVA_03062at 132.083 kb on - strand, within BACOVA_03062at 132.095 kb on + strand, within BACOVA_03062at 132.102 kb on - strand, within BACOVA_03062at 132.115 kb on + strand, within BACOVA_03062at 132.118 kb on + strand, within BACOVA_03062at 132.118 kb on + strand, within BACOVA_03062at 132.119 kb on - strand, within BACOVA_03062at 132.119 kb on - strand, within BACOVA_03062at 132.121 kb on + strand, within BACOVA_03062at 132.157 kb on + strand, within BACOVA_03062at 132.157 kb on + strand, within BACOVA_03062at 132.157 kb on + strand, within BACOVA_03062at 132.158 kb on - strand, within BACOVA_03062at 132.177 kb on - strand, within BACOVA_03062at 132.177 kb on - strand, within BACOVA_03062at 132.178 kb on + strand, within BACOVA_03062at 132.184 kb on + strand, within BACOVA_03062at 132.184 kb on + strand, within BACOVA_03062at 132.204 kb on - strand, within BACOVA_03062at 132.212 kb on + strand, within BACOVA_03062at 132.215 kb on + strand, within BACOVA_03062at 132.215 kb on + strand, within BACOVA_03062at 132.216 kb on - strand, within BACOVA_03062at 132.216 kb on - strand, within BACOVA_03062at 132.217 kb on + strand, within BACOVA_03062at 132.218 kb on - strand, within BACOVA_03062at 132.218 kb on - strand, within BACOVA_03062at 132.219 kb on + strand, within BACOVA_03062at 132.219 kb on + strand, within BACOVA_03062at 132.303 kb on - strand, within BACOVA_03062at 132.364 kb on + strand, within BACOVA_03062at 132.365 kb on - strand, within BACOVA_03062at 132.365 kb on - strand, within BACOVA_03062at 132.365 kb on - strand, within BACOVA_03062at 132.365 kb on - strand, within BACOVA_03062at 132.365 kb on - strand, within BACOVA_03062at 132.373 kb on - strand, within BACOVA_03062at 132.394 kb on + strand, within BACOVA_03062at 132.419 kb on + strand, within BACOVA_03062at 132.465 kb on + strand, within BACOVA_03062at 132.469 kb on + strand, within BACOVA_03062at 132.470 kb on - strand, within BACOVA_03062at 132.470 kb on - strand, within BACOVA_03062at 132.470 kb on - strand, within BACOVA_03062at 132.470 kb on - strand, within BACOVA_03062at 132.480 kb on + strand, within BACOVA_03062at 132.504 kb on - strand, within BACOVA_03062at 132.527 kb on + strand, within BACOVA_03062at 132.572 kb on + strand, within BACOVA_03062at 132.572 kb on + strand, within BACOVA_03062at 132.580 kb on - strand, within BACOVA_03062

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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130,428 - +0.1
130,430 - +0.9
130,430 - -0.6
130,482 - -0.4
130,484 + -0.2
130,502 + -0.1
130,502 + -0.3
130,503 - -0.8
130,511 + +0.0
130,518 - +1.0
130,529 + -1.4
130,530 - -0.1
130,550 - -1.4
130,584 + -0.5
130,585 - +3.4
130,613 + +0.0
130,613 + -1.4
130,614 - +0.8
130,614 - +0.8
130,615 + +0.5
130,615 + -0.2
130,616 - -0.8
130,629 - BACOVA_03060 0.11 +2.0
130,695 - BACOVA_03060 0.19 +0.6
130,719 - BACOVA_03060 0.22 -2.0
130,740 + BACOVA_03060 0.24 +0.2
130,740 + BACOVA_03060 0.24 -0.6
130,741 - BACOVA_03060 0.24 -0.1
130,742 + BACOVA_03060 0.24 +0.8
130,742 + BACOVA_03060 0.24 -0.3
130,743 - BACOVA_03060 0.24 -0.4
130,745 + BACOVA_03060 0.25 +0.3
130,746 - BACOVA_03060 0.25 +0.8
130,746 - BACOVA_03060 0.25 -1.2
130,748 + BACOVA_03060 0.25 +1.1
130,840 - BACOVA_03060 0.36 -0.3
130,857 - BACOVA_03060 0.37 +0.7
130,859 - BACOVA_03060 0.38 +0.4
130,859 - BACOVA_03060 0.38 +0.1
130,859 - BACOVA_03060 0.38 -0.4
130,859 - BACOVA_03060 0.38 +0.4
130,884 - BACOVA_03060 0.41 +0.2
130,970 + BACOVA_03060 0.50 -0.4
130,971 - BACOVA_03060 0.51 +1.1
130,979 + BACOVA_03060 0.51 -0.9
131,048 + BACOVA_03060 0.59 +2.5
131,049 - BACOVA_03060 0.59 +1.0
131,109 - BACOVA_03060 0.66 -0.8
131,202 - BACOVA_03060 0.77 +1.5
131,202 - BACOVA_03060 0.77 +0.4
131,215 + BACOVA_03060 0.78 -0.8
131,337 + -0.2
131,405 - -0.3
131,422 + -0.8
131,425 + -0.1
131,434 + BACOVA_03061 0.10 -0.6
131,434 + BACOVA_03061 0.10 -0.6
131,434 + BACOVA_03061 0.10 +0.6
131,445 + BACOVA_03061 0.17 -1.1
131,454 + BACOVA_03061 0.22 +1.8
131,455 - BACOVA_03061 0.23 -1.0
131,469 + BACOVA_03061 0.32 +0.1
131,501 + BACOVA_03061 0.51 -0.4
131,503 + BACOVA_03061 0.52 -1.7
131,504 - BACOVA_03061 0.53 -1.3
131,507 + BACOVA_03061 0.55 +1.1
131,509 + BACOVA_03061 0.56 -2.3
131,510 - BACOVA_03061 0.56 -0.6
131,562 + BACOVA_03061 0.88 -0.3
131,569 + +0.4
131,575 + +0.5
131,576 - -2.4
131,579 + -0.8
131,579 + -0.9
131,579 + -1.3
131,588 + +0.1
131,588 + -0.2
131,609 + +0.1
131,612 + +0.1
131,613 - +1.2
131,614 + -0.8
131,617 + +1.2
131,618 - -0.4
131,622 + -0.0
131,623 - -0.2
131,654 + +0.2
131,655 - -0.3
131,655 - -1.1
131,674 + -1.3
131,675 - +0.5
131,675 - -0.6
131,720 + -0.3
131,727 - +0.6
131,742 + -1.8
131,743 - +1.5
131,743 - -0.8
131,743 - -3.5
131,749 + +0.8
131,772 + -1.4
131,849 - +0.0
131,881 - BACOVA_03062 0.11 -1.0
131,881 - BACOVA_03062 0.11 -0.4
131,897 + BACOVA_03062 0.12 -0.7
131,897 + BACOVA_03062 0.12 +0.9
131,897 + BACOVA_03062 0.12 +1.2
131,909 + BACOVA_03062 0.13 -0.7
131,910 - BACOVA_03062 0.13 -0.5
131,910 - BACOVA_03062 0.13 -0.3
131,948 + BACOVA_03062 0.15 -1.5
131,948 + BACOVA_03062 0.15 +1.2
131,948 + BACOVA_03062 0.15 -0.2
131,949 - BACOVA_03062 0.15 -0.7
132,007 + BACOVA_03062 0.18 -0.6
132,008 - BACOVA_03062 0.18 -2.5
132,030 - BACOVA_03062 0.19 +0.0
132,076 - BACOVA_03062 0.22 -0.2
132,076 - BACOVA_03062 0.22 +0.5
132,080 - BACOVA_03062 0.22 -1.3
132,083 - BACOVA_03062 0.22 +0.1
132,083 - BACOVA_03062 0.22 +0.2
132,095 + BACOVA_03062 0.23 -0.3
132,102 - BACOVA_03062 0.23 -0.1
132,115 + BACOVA_03062 0.24 -0.6
132,118 + BACOVA_03062 0.24 -0.9
132,118 + BACOVA_03062 0.24 +0.5
132,119 - BACOVA_03062 0.24 -1.1
132,119 - BACOVA_03062 0.24 +0.2
132,121 + BACOVA_03062 0.24 +0.8
132,157 + BACOVA_03062 0.26 +1.5
132,157 + BACOVA_03062 0.26 +0.1
132,157 + BACOVA_03062 0.26 +0.7
132,158 - BACOVA_03062 0.26 -0.9
132,177 - BACOVA_03062 0.27 +0.9
132,177 - BACOVA_03062 0.27 +0.7
132,178 + BACOVA_03062 0.27 +1.8
132,184 + BACOVA_03062 0.28 -1.9
132,184 + BACOVA_03062 0.28 -1.2
132,204 - BACOVA_03062 0.29 +2.6
132,212 + BACOVA_03062 0.29 -0.1
132,215 + BACOVA_03062 0.29 +0.8
132,215 + BACOVA_03062 0.29 +0.3
132,216 - BACOVA_03062 0.30 -3.4
132,216 - BACOVA_03062 0.30 -1.2
132,217 + BACOVA_03062 0.30 -0.8
132,218 - BACOVA_03062 0.30 -1.9
132,218 - BACOVA_03062 0.30 -0.5
132,219 + BACOVA_03062 0.30 -0.6
132,219 + BACOVA_03062 0.30 -1.4
132,303 - BACOVA_03062 0.34 +0.2
132,364 + BACOVA_03062 0.38 -0.3
132,365 - BACOVA_03062 0.38 -0.4
132,365 - BACOVA_03062 0.38 +0.0
132,365 - BACOVA_03062 0.38 -0.7
132,365 - BACOVA_03062 0.38 -1.2
132,365 - BACOVA_03062 0.38 -0.5
132,373 - BACOVA_03062 0.38 -0.6
132,394 + BACOVA_03062 0.39 +2.2
132,419 + BACOVA_03062 0.41 -1.1
132,465 + BACOVA_03062 0.43 +0.3
132,469 + BACOVA_03062 0.43 -1.2
132,470 - BACOVA_03062 0.43 +0.2
132,470 - BACOVA_03062 0.43 -0.3
132,470 - BACOVA_03062 0.43 +0.9
132,470 - BACOVA_03062 0.43 +0.3
132,480 + BACOVA_03062 0.44 +1.7
132,504 - BACOVA_03062 0.45 -0.7
132,527 + BACOVA_03062 0.46 +0.1
132,572 + BACOVA_03062 0.49 -0.5
132,572 + BACOVA_03062 0.49 +0.7
132,580 - BACOVA_03062 0.49 -2.0

Or see this region's nucleotide sequence