Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02851 and BACOVA_02852 are separated by 25 nucleotides BACOVA_02852 and BACOVA_02853 are separated by 115 nucleotides
BACOVA_02851: BACOVA_02851 - hypothetical protein, at 333,066 to 335,414
_02851
BACOVA_02852: BACOVA_02852 - hypothetical protein, at 335,440 to 337,551
_02852
BACOVA_02853: BACOVA_02853 - radical SAM domain protein, at 337,667 to 338,440
_02853
Position (kb) 335
336
337
338 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 334.441 kb on - strand, within BACOVA_02851 at 334.442 kb on + strand, within BACOVA_02851 at 334.443 kb on - strand, within BACOVA_02851 at 334.445 kb on + strand, within BACOVA_02851 at 334.445 kb on + strand, within BACOVA_02851 at 334.446 kb on - strand, within BACOVA_02851 at 334.451 kb on + strand, within BACOVA_02851 at 334.451 kb on + strand, within BACOVA_02851 at 334.467 kb on + strand, within BACOVA_02851 at 334.468 kb on - strand, within BACOVA_02851 at 334.479 kb on - strand, within BACOVA_02851 at 334.479 kb on - strand, within BACOVA_02851 at 334.528 kb on + strand, within BACOVA_02851 at 334.547 kb on + strand, within BACOVA_02851 at 334.547 kb on + strand, within BACOVA_02851 at 334.548 kb on - strand, within BACOVA_02851 at 334.548 kb on - strand, within BACOVA_02851 at 334.548 kb on - strand, within BACOVA_02851 at 334.557 kb on - strand, within BACOVA_02851 at 334.575 kb on - strand, within BACOVA_02851 at 334.655 kb on - strand, within BACOVA_02851 at 334.678 kb on + strand, within BACOVA_02851 at 334.678 kb on + strand, within BACOVA_02851 at 334.679 kb on - strand, within BACOVA_02851 at 334.716 kb on - strand, within BACOVA_02851 at 334.716 kb on - strand, within BACOVA_02851 at 334.750 kb on - strand, within BACOVA_02851 at 334.788 kb on - strand, within BACOVA_02851 at 334.807 kb on + strand, within BACOVA_02851 at 334.842 kb on - strand, within BACOVA_02851 at 334.914 kb on + strand, within BACOVA_02851 at 334.915 kb on - strand, within BACOVA_02851 at 334.935 kb on + strand, within BACOVA_02851 at 334.940 kb on + strand, within BACOVA_02851 at 334.941 kb on - strand, within BACOVA_02851 at 334.949 kb on + strand, within BACOVA_02851 at 334.950 kb on - strand, within BACOVA_02851 at 334.958 kb on + strand, within BACOVA_02851 at 334.959 kb on - strand, within BACOVA_02851 at 334.968 kb on + strand, within BACOVA_02851 at 334.969 kb on - strand, within BACOVA_02851 at 334.970 kb on + strand, within BACOVA_02851 at 334.970 kb on + strand, within BACOVA_02851 at 334.971 kb on - strand, within BACOVA_02851 at 334.971 kb on - strand, within BACOVA_02851 at 334.971 kb on - strand, within BACOVA_02851 at 334.972 kb on + strand, within BACOVA_02851 at 334.973 kb on - strand, within BACOVA_02851 at 334.976 kb on - strand, within BACOVA_02851 at 335.010 kb on - strand, within BACOVA_02851 at 335.055 kb on + strand, within BACOVA_02851 at 335.126 kb on + strand, within BACOVA_02851 at 335.126 kb on + strand, within BACOVA_02851 at 335.126 kb on + strand, within BACOVA_02851 at 335.127 kb on - strand, within BACOVA_02851 at 335.158 kb on + strand, within BACOVA_02851 at 335.159 kb on - strand, within BACOVA_02851 at 335.170 kb on + strand, within BACOVA_02851 at 335.201 kb on - strand at 335.210 kb on + strand at 335.210 kb on + strand at 335.211 kb on - strand at 335.217 kb on - strand at 335.217 kb on - strand at 335.232 kb on + strand at 335.233 kb on - strand at 335.240 kb on + strand at 335.262 kb on - strand at 335.276 kb on - strand at 335.344 kb on - strand at 335.344 kb on - strand at 335.346 kb on - strand at 335.346 kb on - strand at 335.352 kb on - strand at 335.352 kb on - strand at 335.403 kb on - strand at 335.548 kb on - strand at 335.548 kb on - strand at 335.572 kb on + strand at 335.572 kb on + strand at 335.572 kb on + strand at 335.572 kb on + strand at 335.573 kb on - strand at 335.594 kb on - strand at 335.594 kb on - strand at 335.648 kb on + strand at 335.663 kb on - strand, within BACOVA_02852 at 335.696 kb on + strand, within BACOVA_02852 at 335.704 kb on - strand, within BACOVA_02852 at 335.706 kb on + strand, within BACOVA_02852 at 335.706 kb on + strand, within BACOVA_02852 at 335.708 kb on + strand, within BACOVA_02852 at 335.709 kb on - strand, within BACOVA_02852 at 335.709 kb on - strand, within BACOVA_02852 at 335.751 kb on + strand, within BACOVA_02852 at 335.761 kb on - strand, within BACOVA_02852 at 335.783 kb on - strand, within BACOVA_02852 at 335.808 kb on + strand, within BACOVA_02852 at 335.809 kb on - strand, within BACOVA_02852 at 335.866 kb on - strand, within BACOVA_02852 at 335.885 kb on - strand, within BACOVA_02852 at 335.914 kb on + strand, within BACOVA_02852 at 335.914 kb on + strand, within BACOVA_02852 at 335.915 kb on - strand, within BACOVA_02852 at 335.922 kb on + strand, within BACOVA_02852 at 335.923 kb on - strand, within BACOVA_02852 at 335.969 kb on + strand, within BACOVA_02852 at 335.970 kb on - strand, within BACOVA_02852 at 335.997 kb on + strand, within BACOVA_02852 at 336.034 kb on + strand, within BACOVA_02852 at 336.034 kb on + strand, within BACOVA_02852 at 336.035 kb on - strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.037 kb on - strand, within BACOVA_02852 at 336.037 kb on - strand, within BACOVA_02852 at 336.037 kb on - strand, within BACOVA_02852 at 336.060 kb on - strand, within BACOVA_02852 at 336.073 kb on - strand, within BACOVA_02852 at 336.073 kb on - strand, within BACOVA_02852 at 336.075 kb on + strand, within BACOVA_02852 at 336.075 kb on + strand, within BACOVA_02852 at 336.075 kb on + strand, within BACOVA_02852 at 336.076 kb on - strand, within BACOVA_02852 at 336.076 kb on - strand, within BACOVA_02852 at 336.102 kb on - strand, within BACOVA_02852 at 336.152 kb on + strand, within BACOVA_02852 at 336.181 kb on + strand, within BACOVA_02852 at 336.201 kb on + strand, within BACOVA_02852 at 336.234 kb on + strand, within BACOVA_02852 at 336.260 kb on + strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.265 kb on - strand, within BACOVA_02852 at 336.296 kb on + strand, within BACOVA_02852 at 336.333 kb on + strand, within BACOVA_02852 at 336.342 kb on + strand, within BACOVA_02852 at 336.363 kb on - strand, within BACOVA_02852 at 336.408 kb on + strand, within BACOVA_02852 at 336.409 kb on - strand, within BACOVA_02852 at 336.409 kb on - strand, within BACOVA_02852 at 336.415 kb on + strand, within BACOVA_02852 at 336.450 kb on + strand, within BACOVA_02852 at 336.451 kb on - strand, within BACOVA_02852 at 336.533 kb on - strand, within BACOVA_02852 at 336.565 kb on - strand, within BACOVA_02852 at 336.565 kb on - strand, within BACOVA_02852 at 336.585 kb on + strand, within BACOVA_02852 at 336.585 kb on + strand, within BACOVA_02852 at 336.586 kb on - strand, within BACOVA_02852 at 336.586 kb on - strand, within BACOVA_02852 at 336.638 kb on - strand, within BACOVA_02852 at 336.638 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.689 kb on + strand, within BACOVA_02852 at 336.798 kb on + strand, within BACOVA_02852 at 336.799 kb on - strand, within BACOVA_02852 at 336.799 kb on - strand, within BACOVA_02852 at 336.822 kb on - strand, within BACOVA_02852 at 336.871 kb on + strand, within BACOVA_02852 at 336.872 kb on - strand, within BACOVA_02852 at 336.874 kb on - strand, within BACOVA_02852 at 336.902 kb on + strand, within BACOVA_02852 at 336.929 kb on - strand, within BACOVA_02852 at 336.929 kb on - strand, within BACOVA_02852 at 336.944 kb on - strand, within BACOVA_02852 at 336.969 kb on + strand, within BACOVA_02852 at 336.969 kb on + strand, within BACOVA_02852 at 336.971 kb on + strand, within BACOVA_02852 at 336.971 kb on + strand, within BACOVA_02852 at 336.973 kb on + strand, within BACOVA_02852 at 336.974 kb on - strand, within BACOVA_02852 at 336.985 kb on - strand, within BACOVA_02852 at 336.985 kb on - strand, within BACOVA_02852 at 337.033 kb on - strand, within BACOVA_02852 at 337.125 kb on - strand, within BACOVA_02852 at 337.288 kb on - strand, within BACOVA_02852 at 337.300 kb on - strand, within BACOVA_02852 at 337.330 kb on + strand, within BACOVA_02852 at 337.355 kb on + strand at 337.355 kb on + strand at 337.402 kb on - strand at 337.402 kb on - strand at 337.404 kb on + strand at 337.409 kb on + strand at 337.501 kb on + strand at 337.502 kb on - strand at 337.527 kb on - strand at 337.560 kb on - strand at 337.564 kb on + strand at 337.568 kb on - strand at 337.568 kb on - strand at 337.610 kb on - strand at 337.610 kb on - strand at 337.610 kb on - strand at 337.615 kb on - strand at 337.616 kb on + strand at 337.644 kb on + strand at 337.645 kb on - strand at 337.658 kb on + strand at 337.659 kb on - strand at 337.664 kb on - strand at 337.965 kb on + strand, within BACOVA_02853 at 338.032 kb on + strand, within BACOVA_02853 at 338.077 kb on - strand, within BACOVA_02853 at 338.081 kb on - strand, within BACOVA_02853 at 338.081 kb on - strand, within BACOVA_02853 at 338.084 kb on - strand, within BACOVA_02853 at 338.086 kb on + strand, within BACOVA_02853 at 338.118 kb on - strand, within BACOVA_02853 at 338.251 kb on + strand, within BACOVA_02853 at 338.251 kb on + strand, within BACOVA_02853 at 338.252 kb on - strand, within BACOVA_02853 at 338.252 kb on - strand, within BACOVA_02853 at 338.254 kb on + strand, within BACOVA_02853 at 338.322 kb on + strand, within BACOVA_02853 at 338.324 kb on + strand, within BACOVA_02853 at 338.326 kb on + strand, within BACOVA_02853 at 338.326 kb on + strand, within BACOVA_02853 at 338.327 kb on - strand, within BACOVA_02853 at 338.383 kb on - strand at 338.389 kb on + strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.435 kb on + strand at 338.444 kb on - strand at 338.462 kb on + strand at 338.463 kb on - strand at 338.476 kb on - strand at 338.479 kb on - strand at 338.496 kb on + strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.529 kb on - strand at 338.531 kb on - strand at 338.537 kb on + strand at 338.542 kb on + strand at 338.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 334,441 - BACOVA_02851 0.59 -2.5 334,442 + BACOVA_02851 0.59 +1.5 334,443 - BACOVA_02851 0.59 +1.0 334,445 + BACOVA_02851 0.59 -1.0 334,445 + BACOVA_02851 0.59 -1.8 334,446 - BACOVA_02851 0.59 -0.0 334,451 + BACOVA_02851 0.59 +0.3 334,451 + BACOVA_02851 0.59 +0.7 334,467 + BACOVA_02851 0.60 -0.5 334,468 - BACOVA_02851 0.60 +1.8 334,479 - BACOVA_02851 0.60 +0.8 334,479 - BACOVA_02851 0.60 +1.0 334,528 + BACOVA_02851 0.62 +0.7 334,547 + BACOVA_02851 0.63 -1.1 334,547 + BACOVA_02851 0.63 +0.2 334,548 - BACOVA_02851 0.63 -0.4 334,548 - BACOVA_02851 0.63 -0.6 334,548 - BACOVA_02851 0.63 +0.1 334,557 - BACOVA_02851 0.63 +1.8 334,575 - BACOVA_02851 0.64 -1.7 334,655 - BACOVA_02851 0.68 -0.5 334,678 + BACOVA_02851 0.69 +0.2 334,678 + BACOVA_02851 0.69 +0.6 334,679 - BACOVA_02851 0.69 -0.9 334,716 - BACOVA_02851 0.70 +3.2 334,716 - BACOVA_02851 0.70 +0.5 334,750 - BACOVA_02851 0.72 -0.9 334,788 - BACOVA_02851 0.73 -0.4 334,807 + BACOVA_02851 0.74 +3.7 334,842 - BACOVA_02851 0.76 +1.2 334,914 + BACOVA_02851 0.79 -0.2 334,915 - BACOVA_02851 0.79 -0.8 334,935 + BACOVA_02851 0.80 +0.6 334,940 + BACOVA_02851 0.80 +0.4 334,941 - BACOVA_02851 0.80 -1.4 334,949 + BACOVA_02851 0.80 +1.6 334,950 - BACOVA_02851 0.80 +0.6 334,958 + BACOVA_02851 0.81 -0.0 334,959 - BACOVA_02851 0.81 +0.2 334,968 + BACOVA_02851 0.81 -0.8 334,969 - BACOVA_02851 0.81 -0.9 334,970 + BACOVA_02851 0.81 -0.2 334,970 + BACOVA_02851 0.81 -0.3 334,971 - BACOVA_02851 0.81 -0.9 334,971 - BACOVA_02851 0.81 +1.9 334,971 - BACOVA_02851 0.81 -0.2 334,972 + BACOVA_02851 0.81 +0.8 334,973 - BACOVA_02851 0.81 +0.8 334,976 - BACOVA_02851 0.81 -0.6 335,010 - BACOVA_02851 0.83 -1.0 335,055 + BACOVA_02851 0.85 +0.6 335,126 + BACOVA_02851 0.88 +1.2 335,126 + BACOVA_02851 0.88 -1.4 335,126 + BACOVA_02851 0.88 +1.0 335,127 - BACOVA_02851 0.88 +0.2 335,158 + BACOVA_02851 0.89 +1.5 335,159 - BACOVA_02851 0.89 +0.8 335,170 + BACOVA_02851 0.90 +1.0 335,201 - -0.5 335,210 + -0.1 335,210 + -0.0 335,211 - -0.4 335,217 - +0.7 335,217 - -0.5 335,232 + -0.4 335,233 - +0.9 335,240 + +0.1 335,262 - +0.6 335,276 - +0.1 335,344 - +0.1 335,344 - -0.9 335,346 - -1.9 335,346 - -0.0 335,352 - +0.3 335,352 - +1.8 335,403 - -0.4 335,548 - +1.2 335,548 - -0.0 335,572 + -0.8 335,572 + -0.9 335,572 + -1.3 335,572 + +1.0 335,573 - +1.0 335,594 - -0.9 335,594 - +0.7 335,648 + +1.5 335,663 - BACOVA_02852 0.11 +0.5 335,696 + BACOVA_02852 0.12 -0.5 335,704 - BACOVA_02852 0.12 +0.0 335,706 + BACOVA_02852 0.13 -0.8 335,706 + BACOVA_02852 0.13 -1.0 335,708 + BACOVA_02852 0.13 -0.9 335,709 - BACOVA_02852 0.13 -0.5 335,709 - BACOVA_02852 0.13 +1.8 335,751 + BACOVA_02852 0.15 -0.5 335,761 - BACOVA_02852 0.15 +1.2 335,783 - BACOVA_02852 0.16 -1.6 335,808 + BACOVA_02852 0.17 -0.9 335,809 - BACOVA_02852 0.17 -1.1 335,866 - BACOVA_02852 0.20 -1.7 335,885 - BACOVA_02852 0.21 +0.4 335,914 + BACOVA_02852 0.22 -0.9 335,914 + BACOVA_02852 0.22 -1.7 335,915 - BACOVA_02852 0.22 +0.8 335,922 + BACOVA_02852 0.23 +1.8 335,923 - BACOVA_02852 0.23 -1.2 335,969 + BACOVA_02852 0.25 -0.0 335,970 - BACOVA_02852 0.25 +0.3 335,997 + BACOVA_02852 0.26 +0.3 336,034 + BACOVA_02852 0.28 +1.8 336,034 + BACOVA_02852 0.28 -1.3 336,035 - BACOVA_02852 0.28 -0.1 336,036 + BACOVA_02852 0.28 +1.0 336,036 + BACOVA_02852 0.28 -0.2 336,036 + BACOVA_02852 0.28 -1.2 336,036 + BACOVA_02852 0.28 -0.9 336,037 - BACOVA_02852 0.28 -0.1 336,037 - BACOVA_02852 0.28 +0.6 336,037 - BACOVA_02852 0.28 -0.6 336,060 - BACOVA_02852 0.29 -0.4 336,073 - BACOVA_02852 0.30 -1.9 336,073 - BACOVA_02852 0.30 +0.2 336,075 + BACOVA_02852 0.30 +1.5 336,075 + BACOVA_02852 0.30 -1.4 336,075 + BACOVA_02852 0.30 -1.7 336,076 - BACOVA_02852 0.30 -0.9 336,076 - BACOVA_02852 0.30 +0.1 336,102 - BACOVA_02852 0.31 -0.1 336,152 + BACOVA_02852 0.34 -0.6 336,181 + BACOVA_02852 0.35 +1.2 336,201 + BACOVA_02852 0.36 -0.4 336,234 + BACOVA_02852 0.38 +1.2 336,260 + BACOVA_02852 0.39 -1.6 336,261 - BACOVA_02852 0.39 -0.1 336,261 - BACOVA_02852 0.39 +0.9 336,261 - BACOVA_02852 0.39 -1.3 336,261 - BACOVA_02852 0.39 +1.8 336,265 - BACOVA_02852 0.39 -0.7 336,296 + BACOVA_02852 0.41 -1.2 336,333 + BACOVA_02852 0.42 +0.7 336,342 + BACOVA_02852 0.43 -0.4 336,363 - BACOVA_02852 0.44 -1.6 336,408 + BACOVA_02852 0.46 -0.3 336,409 - BACOVA_02852 0.46 -0.6 336,409 - BACOVA_02852 0.46 -1.7 336,415 + BACOVA_02852 0.46 +2.4 336,450 + BACOVA_02852 0.48 -1.6 336,451 - BACOVA_02852 0.48 -0.5 336,533 - BACOVA_02852 0.52 +1.0 336,565 - BACOVA_02852 0.53 -0.7 336,565 - BACOVA_02852 0.53 -1.8 336,585 + BACOVA_02852 0.54 -1.0 336,585 + BACOVA_02852 0.54 -1.1 336,586 - BACOVA_02852 0.54 +0.6 336,586 - BACOVA_02852 0.54 -3.9 336,638 - BACOVA_02852 0.57 +0.8 336,638 - BACOVA_02852 0.57 -1.8 336,645 - BACOVA_02852 0.57 -0.6 336,645 - BACOVA_02852 0.57 -0.0 336,645 - BACOVA_02852 0.57 -0.3 336,645 - BACOVA_02852 0.57 -2.2 336,689 + BACOVA_02852 0.59 +0.4 336,798 + BACOVA_02852 0.64 -0.7 336,799 - BACOVA_02852 0.64 -1.2 336,799 - BACOVA_02852 0.64 -1.4 336,822 - BACOVA_02852 0.65 -1.4 336,871 + BACOVA_02852 0.68 -2.6 336,872 - BACOVA_02852 0.68 -0.3 336,874 - BACOVA_02852 0.68 -0.8 336,902 + BACOVA_02852 0.69 +0.7 336,929 - BACOVA_02852 0.71 -1.7 336,929 - BACOVA_02852 0.71 +0.1 336,944 - BACOVA_02852 0.71 -1.6 336,969 + BACOVA_02852 0.72 -0.1 336,969 + BACOVA_02852 0.72 -0.7 336,971 + BACOVA_02852 0.72 -0.3 336,971 + BACOVA_02852 0.72 -0.5 336,973 + BACOVA_02852 0.73 -0.5 336,974 - BACOVA_02852 0.73 -0.4 336,985 - BACOVA_02852 0.73 -0.6 336,985 - BACOVA_02852 0.73 -0.3 337,033 - BACOVA_02852 0.75 -0.5 337,125 - BACOVA_02852 0.80 -1.2 337,288 - BACOVA_02852 0.88 -0.9 337,300 - BACOVA_02852 0.88 +1.0 337,330 + BACOVA_02852 0.89 -1.1 337,355 + +0.8 337,355 + -0.9 337,402 - +0.1 337,402 - +0.2 337,404 + -0.4 337,409 + -1.7 337,501 + -1.6 337,502 - -1.2 337,527 - -0.8 337,560 - -0.9 337,564 + -0.1 337,568 - -1.7 337,568 - +1.1 337,610 - -1.1 337,610 - -1.2 337,610 - -2.9 337,615 - +0.1 337,616 + -0.2 337,644 + -0.6 337,645 - +0.5 337,658 + -0.1 337,659 - -2.6 337,664 - -2.4 337,965 + BACOVA_02853 0.39 +0.6 338,032 + BACOVA_02853 0.47 -0.4 338,077 - BACOVA_02853 0.53 +0.3 338,081 - BACOVA_02853 0.53 -1.8 338,081 - BACOVA_02853 0.53 +0.3 338,084 - BACOVA_02853 0.54 -1.0 338,086 + BACOVA_02853 0.54 +0.6 338,118 - BACOVA_02853 0.58 -0.0 338,251 + BACOVA_02853 0.75 -0.3 338,251 + BACOVA_02853 0.75 -2.9 338,252 - BACOVA_02853 0.76 +0.6 338,252 - BACOVA_02853 0.76 -0.0 338,254 + BACOVA_02853 0.76 +0.0 338,322 + BACOVA_02853 0.85 -1.7 338,324 + BACOVA_02853 0.85 -0.9 338,326 + BACOVA_02853 0.85 -1.2 338,326 + BACOVA_02853 0.85 -1.3 338,327 - BACOVA_02853 0.85 -0.9 338,383 - -0.0 338,389 + +0.1 338,417 - -1.1 338,417 - -0.5 338,435 + -0.9 338,444 - +0.1 338,462 + -0.6 338,463 - -1.0 338,476 - -1.5 338,479 - +3.8 338,496 + -0.0 338,497 - -0.6 338,497 - +0.8 338,529 - +2.8 338,531 - -1.3 338,537 + +2.2 338,542 + +0.3 338,543 - +0.5
Or see this region's nucleotide sequence