Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02684

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02683 and BACOVA_02684 are separated by 68 nucleotidesBACOVA_02684 and BACOVA_02685 are separated by 30 nucleotides BACOVA_02683: BACOVA_02683 - hypothetical protein, at 88,581 to 89,588 _02683 BACOVA_02684: BACOVA_02684 - hypothetical protein, at 89,657 to 90,238 _02684 BACOVA_02685: BACOVA_02685 - hypothetical protein, at 90,269 to 92,146 _02685 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 88.727 kb on + strand, within BACOVA_02683at 88.727 kb on + strand, within BACOVA_02683at 88.728 kb on - strand, within BACOVA_02683at 88.755 kb on + strand, within BACOVA_02683at 88.774 kb on - strand, within BACOVA_02683at 88.802 kb on + strand, within BACOVA_02683at 88.802 kb on + strand, within BACOVA_02683at 88.802 kb on + strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.803 kb on - strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.804 kb on + strand, within BACOVA_02683at 88.805 kb on - strand, within BACOVA_02683at 88.805 kb on - strand, within BACOVA_02683at 88.877 kb on - strand, within BACOVA_02683at 88.877 kb on - strand, within BACOVA_02683at 88.921 kb on + strand, within BACOVA_02683at 89.010 kb on + strand, within BACOVA_02683at 89.099 kb on + strand, within BACOVA_02683at 89.147 kb on + strand, within BACOVA_02683at 89.148 kb on - strand, within BACOVA_02683at 89.153 kb on + strand, within BACOVA_02683at 89.153 kb on + strand, within BACOVA_02683at 89.154 kb on - strand, within BACOVA_02683at 89.239 kb on + strand, within BACOVA_02683at 89.240 kb on - strand, within BACOVA_02683at 89.243 kb on + strand, within BACOVA_02683at 89.295 kb on + strand, within BACOVA_02683at 89.314 kb on + strand, within BACOVA_02683at 89.320 kb on + strand, within BACOVA_02683at 89.380 kb on - strand, within BACOVA_02683at 89.382 kb on - strand, within BACOVA_02683at 89.382 kb on - strand, within BACOVA_02683at 89.382 kb on - strand, within BACOVA_02683at 89.388 kb on + strand, within BACOVA_02683at 89.458 kb on + strand, within BACOVA_02683at 89.470 kb on + strand, within BACOVA_02683at 89.477 kb on + strand, within BACOVA_02683at 89.478 kb on - strand, within BACOVA_02683at 89.537 kb on + strandat 89.543 kb on + strandat 89.555 kb on + strandat 89.556 kb on - strandat 89.556 kb on - strandat 89.558 kb on - strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.562 kb on + strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.563 kb on - strandat 89.564 kb on + strandat 89.601 kb on + strandat 89.613 kb on + strandat 89.617 kb on - strandat 89.628 kb on + strandat 89.629 kb on - strandat 89.645 kb on + strandat 89.713 kb on - strandat 89.758 kb on + strand, within BACOVA_02684at 89.758 kb on + strand, within BACOVA_02684at 89.799 kb on + strand, within BACOVA_02684at 89.799 kb on + strand, within BACOVA_02684at 89.800 kb on - strand, within BACOVA_02684at 89.800 kb on - strand, within BACOVA_02684at 89.800 kb on - strand, within BACOVA_02684at 89.801 kb on + strand, within BACOVA_02684at 89.802 kb on - strand, within BACOVA_02684at 89.809 kb on - strand, within BACOVA_02684at 89.809 kb on - strand, within BACOVA_02684at 89.855 kb on - strand, within BACOVA_02684at 89.882 kb on - strand, within BACOVA_02684at 89.934 kb on + strand, within BACOVA_02684at 89.935 kb on - strand, within BACOVA_02684at 89.946 kb on + strand, within BACOVA_02684at 89.947 kb on - strand, within BACOVA_02684at 89.947 kb on - strand, within BACOVA_02684at 89.986 kb on + strand, within BACOVA_02684at 90.037 kb on + strand, within BACOVA_02684at 90.037 kb on + strand, within BACOVA_02684at 90.038 kb on - strand, within BACOVA_02684at 90.067 kb on + strand, within BACOVA_02684at 90.253 kb on - strandat 90.259 kb on - strandat 90.259 kb on - strandat 90.263 kb on + strandat 90.263 kb on + strandat 90.299 kb on - strandat 90.343 kb on + strandat 90.347 kb on + strandat 90.348 kb on - strandat 90.348 kb on - strandat 90.464 kb on + strand, within BACOVA_02685at 90.488 kb on + strand, within BACOVA_02685at 90.517 kb on + strand, within BACOVA_02685at 90.529 kb on + strand, within BACOVA_02685at 90.665 kb on - strand, within BACOVA_02685at 90.691 kb on - strand, within BACOVA_02685at 90.692 kb on + strand, within BACOVA_02685at 90.693 kb on - strand, within BACOVA_02685at 90.842 kb on + strand, within BACOVA_02685at 90.842 kb on + strand, within BACOVA_02685at 90.887 kb on - strand, within BACOVA_02685at 90.899 kb on + strand, within BACOVA_02685at 90.919 kb on + strand, within BACOVA_02685at 90.952 kb on + strand, within BACOVA_02685at 90.999 kb on + strand, within BACOVA_02685at 91.028 kb on - strand, within BACOVA_02685at 91.028 kb on - strand, within BACOVA_02685at 91.039 kb on + strand, within BACOVA_02685at 91.049 kb on - strand, within BACOVA_02685at 91.083 kb on - strand, within BACOVA_02685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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88,727 + BACOVA_02683 0.14 +0.6
88,727 + BACOVA_02683 0.14 +0.5
88,728 - BACOVA_02683 0.15 -1.1
88,755 + BACOVA_02683 0.17 +2.2
88,774 - BACOVA_02683 0.19 +1.1
88,802 + BACOVA_02683 0.22 -3.2
88,802 + BACOVA_02683 0.22 +2.4
88,802 + BACOVA_02683 0.22 +0.6
88,803 - BACOVA_02683 0.22 -0.9
88,803 - BACOVA_02683 0.22 -1.4
88,803 - BACOVA_02683 0.22 +0.1
88,803 - BACOVA_02683 0.22 -0.5
88,803 - BACOVA_02683 0.22 +0.1
88,804 + BACOVA_02683 0.22 +0.3
88,804 + BACOVA_02683 0.22 +0.1
88,804 + BACOVA_02683 0.22 -0.7
88,804 + BACOVA_02683 0.22 -0.4
88,804 + BACOVA_02683 0.22 +1.5
88,804 + BACOVA_02683 0.22 +2.1
88,805 - BACOVA_02683 0.22 -0.8
88,805 - BACOVA_02683 0.22 -2.1
88,877 - BACOVA_02683 0.29 +0.7
88,877 - BACOVA_02683 0.29 -1.9
88,921 + BACOVA_02683 0.34 +2.2
89,010 + BACOVA_02683 0.43 -0.3
89,099 + BACOVA_02683 0.51 +2.6
89,147 + BACOVA_02683 0.56 -0.7
89,148 - BACOVA_02683 0.56 +1.5
89,153 + BACOVA_02683 0.57 +0.3
89,153 + BACOVA_02683 0.57 -0.5
89,154 - BACOVA_02683 0.57 +0.6
89,239 + BACOVA_02683 0.65 +0.1
89,240 - BACOVA_02683 0.65 -0.3
89,243 + BACOVA_02683 0.66 -1.4
89,295 + BACOVA_02683 0.71 -0.2
89,314 + BACOVA_02683 0.73 -1.5
89,320 + BACOVA_02683 0.73 +0.0
89,380 - BACOVA_02683 0.79 -1.1
89,382 - BACOVA_02683 0.79 -0.3
89,382 - BACOVA_02683 0.79 +0.5
89,382 - BACOVA_02683 0.79 -0.6
89,388 + BACOVA_02683 0.80 +0.5
89,458 + BACOVA_02683 0.87 +0.1
89,470 + BACOVA_02683 0.88 -1.6
89,477 + BACOVA_02683 0.89 -0.9
89,478 - BACOVA_02683 0.89 -2.2
89,537 + -0.9
89,543 + -1.5
89,555 + +0.1
89,556 - -2.5
89,556 - +2.0
89,558 - +0.1
89,562 + -1.2
89,562 + -0.3
89,562 + +0.5
89,563 - -0.6
89,563 - -0.8
89,563 - +2.0
89,563 - -0.6
89,564 + +0.7
89,601 + +1.0
89,613 + -0.0
89,617 - +1.0
89,628 + -1.4
89,629 - +0.6
89,645 + -0.6
89,713 - -0.8
89,758 + BACOVA_02684 0.17 -0.3
89,758 + BACOVA_02684 0.17 -1.1
89,799 + BACOVA_02684 0.24 -1.5
89,799 + BACOVA_02684 0.24 -2.0
89,800 - BACOVA_02684 0.25 -1.3
89,800 - BACOVA_02684 0.25 -1.5
89,800 - BACOVA_02684 0.25 +2.8
89,801 + BACOVA_02684 0.25 -2.6
89,802 - BACOVA_02684 0.25 -0.5
89,809 - BACOVA_02684 0.26 +1.6
89,809 - BACOVA_02684 0.26 -1.4
89,855 - BACOVA_02684 0.34 -1.0
89,882 - BACOVA_02684 0.39 +3.3
89,934 + BACOVA_02684 0.48 -0.0
89,935 - BACOVA_02684 0.48 -1.1
89,946 + BACOVA_02684 0.50 +0.8
89,947 - BACOVA_02684 0.50 -2.0
89,947 - BACOVA_02684 0.50 -1.9
89,986 + BACOVA_02684 0.57 -0.3
90,037 + BACOVA_02684 0.65 -1.1
90,037 + BACOVA_02684 0.65 -0.2
90,038 - BACOVA_02684 0.65 +0.0
90,067 + BACOVA_02684 0.70 +0.1
90,253 - -0.2
90,259 - -0.8
90,259 - -2.0
90,263 + -1.1
90,263 + -0.2
90,299 - -1.2
90,343 + -1.0
90,347 + +1.0
90,348 - -0.7
90,348 - +0.8
90,464 + BACOVA_02685 0.10 -0.2
90,488 + BACOVA_02685 0.12 -1.3
90,517 + BACOVA_02685 0.13 -0.6
90,529 + BACOVA_02685 0.14 -0.5
90,665 - BACOVA_02685 0.21 +0.1
90,691 - BACOVA_02685 0.22 -1.1
90,692 + BACOVA_02685 0.23 -0.4
90,693 - BACOVA_02685 0.23 -1.8
90,842 + BACOVA_02685 0.31 +0.2
90,842 + BACOVA_02685 0.31 +1.0
90,887 - BACOVA_02685 0.33 -0.6
90,899 + BACOVA_02685 0.34 +0.3
90,919 + BACOVA_02685 0.35 -0.3
90,952 + BACOVA_02685 0.36 +1.5
90,999 + BACOVA_02685 0.39 -1.5
91,028 - BACOVA_02685 0.40 +1.2
91,028 - BACOVA_02685 0.40 +0.0
91,039 + BACOVA_02685 0.41 -0.3
91,049 - BACOVA_02685 0.42 -0.3
91,083 - BACOVA_02685 0.43 -1.6

Or see this region's nucleotide sequence