Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01914 and BACOVA_01915 are separated by 256 nucleotides BACOVA_01915 and BACOVA_01916 are separated by 115 nucleotides BACOVA_01916 and BACOVA_01917 are separated by 140 nucleotides BACOVA_01917 and BACOVA_01918 overlap by 37 nucleotides
BACOVA_01914: BACOVA_01914 - Sel1 repeat protein, at 122,323 to 124,821
_01914
BACOVA_01915: BACOVA_01915 - shikimate kinase, at 125,078 to 125,605
_01915
BACOVA_01916: BACOVA_01916 - hypothetical protein, at 125,721 to 126,323
_01916
BACOVA_01917: BACOVA_01917 - hypothetical protein, at 126,464 to 127,099
_01917
BACOVA_01918: BACOVA_01918 - putative dolichyl-phosphate-mannose-protein mannosyltransferase, at 127,063 to 128,901
_01918
Position (kb)
125
126
127 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 124.734 kb on + strand at 124.734 kb on + strand at 124.734 kb on + strand at 124.734 kb on + strand at 124.735 kb on - strand at 124.737 kb on - strand at 124.789 kb on + strand at 124.790 kb on - strand at 124.824 kb on + strand at 124.827 kb on - strand at 124.834 kb on + strand at 124.835 kb on - strand at 124.835 kb on - strand at 124.850 kb on + strand at 124.853 kb on + strand at 124.860 kb on + strand at 124.886 kb on + strand at 124.955 kb on - strand at 124.955 kb on - strand at 124.955 kb on - strand at 124.980 kb on + strand at 125.020 kb on + strand at 125.021 kb on - strand at 125.062 kb on - strand at 125.063 kb on + strand at 125.073 kb on + strand at 125.073 kb on + strand at 125.079 kb on + strand at 125.080 kb on - strand at 125.080 kb on - strand at 125.158 kb on + strand, within BACOVA_01915 at 125.236 kb on + strand, within BACOVA_01915 at 125.248 kb on + strand, within BACOVA_01915 at 125.292 kb on + strand, within BACOVA_01915 at 125.348 kb on - strand, within BACOVA_01915 at 125.501 kb on - strand, within BACOVA_01915 at 125.596 kb on + strand at 125.597 kb on - strand at 125.605 kb on + strand at 125.640 kb on - strand at 125.664 kb on - strand at 125.680 kb on + strand at 125.681 kb on - strand at 125.681 kb on - strand at 125.870 kb on + strand, within BACOVA_01916 at 125.871 kb on - strand, within BACOVA_01916 at 125.871 kb on - strand, within BACOVA_01916 at 125.871 kb on - strand, within BACOVA_01916 at 125.872 kb on + strand, within BACOVA_01916 at 125.872 kb on + strand, within BACOVA_01916 at 125.872 kb on + strand, within BACOVA_01916 at 125.873 kb on - strand, within BACOVA_01916 at 125.873 kb on - strand, within BACOVA_01916 at 125.873 kb on - strand, within BACOVA_01916 at 125.898 kb on + strand, within BACOVA_01916 at 125.922 kb on - strand, within BACOVA_01916 at 125.925 kb on + strand, within BACOVA_01916 at 125.926 kb on - strand, within BACOVA_01916 at 126.066 kb on + strand, within BACOVA_01916 at 126.066 kb on + strand, within BACOVA_01916 at 126.067 kb on - strand, within BACOVA_01916 at 126.067 kb on - strand, within BACOVA_01916 at 126.162 kb on + strand, within BACOVA_01916 at 126.162 kb on + strand, within BACOVA_01916 at 126.179 kb on + strand, within BACOVA_01916 at 126.254 kb on + strand, within BACOVA_01916 at 126.255 kb on - strand, within BACOVA_01916 at 126.255 kb on - strand, within BACOVA_01916 at 126.281 kb on - strand at 126.308 kb on + strand at 126.323 kb on + strand at 126.339 kb on - strand at 126.343 kb on + strand at 126.344 kb on - strand at 126.344 kb on - strand at 126.408 kb on + strand at 127.124 kb on + strand at 127.166 kb on + strand at 127.169 kb on + strand at 127.169 kb on + strand at 127.185 kb on + strand at 127.185 kb on + strand at 127.186 kb on - strand at 127.188 kb on + strand at 127.189 kb on - strand at 127.216 kb on + strand at 127.216 kb on + strand at 127.246 kb on - strand at 127.315 kb on + strand, within BACOVA_01918
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 124,734 + -0.2 124,734 + +1.1 124,734 + +0.2 124,734 + +0.7 124,735 - +1.3 124,737 - +0.2 124,789 + -1.1 124,790 - -0.2 124,824 + -1.2 124,827 - +0.2 124,834 + +3.5 124,835 - -0.0 124,835 - +1.8 124,850 + -1.7 124,853 + -1.3 124,860 + -0.6 124,886 + -1.9 124,955 - -0.3 124,955 - -0.2 124,955 - +1.4 124,980 + -1.8 125,020 + -0.5 125,021 - -1.6 125,062 - +0.9 125,063 + +0.8 125,073 + +5.9 125,073 + -0.3 125,079 + +3.5 125,080 - +0.7 125,080 - -0.5 125,158 + BACOVA_01915 0.15 -0.4 125,236 + BACOVA_01915 0.30 -0.7 125,248 + BACOVA_01915 0.32 -0.1 125,292 + BACOVA_01915 0.41 -0.4 125,348 - BACOVA_01915 0.51 +0.3 125,501 - BACOVA_01915 0.80 +0.8 125,596 + +1.0 125,597 - +1.0 125,605 + -0.2 125,640 - +0.5 125,664 - +0.9 125,680 + -0.9 125,681 - -0.6 125,681 - -0.6 125,870 + BACOVA_01916 0.25 -0.4 125,871 - BACOVA_01916 0.25 -0.6 125,871 - BACOVA_01916 0.25 +0.7 125,871 - BACOVA_01916 0.25 -0.5 125,872 + BACOVA_01916 0.25 -1.9 125,872 + BACOVA_01916 0.25 +0.4 125,872 + BACOVA_01916 0.25 +0.1 125,873 - BACOVA_01916 0.25 -1.1 125,873 - BACOVA_01916 0.25 -0.3 125,873 - BACOVA_01916 0.25 -1.1 125,898 + BACOVA_01916 0.29 +1.2 125,922 - BACOVA_01916 0.33 -0.1 125,925 + BACOVA_01916 0.34 -0.5 125,926 - BACOVA_01916 0.34 +0.0 126,066 + BACOVA_01916 0.57 -2.7 126,066 + BACOVA_01916 0.57 -1.5 126,067 - BACOVA_01916 0.57 -0.2 126,067 - BACOVA_01916 0.57 +0.0 126,162 + BACOVA_01916 0.73 -1.7 126,162 + BACOVA_01916 0.73 -2.9 126,179 + BACOVA_01916 0.76 -0.2 126,254 + BACOVA_01916 0.88 -1.0 126,255 - BACOVA_01916 0.89 -0.1 126,255 - BACOVA_01916 0.89 +0.5 126,281 - -1.0 126,308 + -2.8 126,323 + +2.0 126,339 - +2.1 126,343 + +0.7 126,344 - -0.8 126,344 - -1.1 126,408 + -0.9 127,124 + -2.0 127,166 + +0.6 127,169 + -2.7 127,169 + -0.7 127,185 + -2.5 127,185 + -3.8 127,186 - -1.1 127,188 + -2.8 127,189 - -2.9 127,216 + -2.3 127,216 + -0.8 127,246 - -3.0 127,315 + BACOVA_01918 0.14 -2.5
Or see this region's nucleotide sequence