Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01871

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01869 and BACOVA_01870 are separated by 36 nucleotidesBACOVA_01870 and BACOVA_01871 are separated by 63 nucleotidesBACOVA_01871 and BACOVA_01872 are separated by 4 nucleotides BACOVA_01869: BACOVA_01869 - hypothetical protein, at 67,473 to 68,705 _01869 BACOVA_01870: BACOVA_01870 - outer membrane insertion signal domain protein, at 68,742 to 69,605 _01870 BACOVA_01871: BACOVA_01871 - hypothetical protein, at 69,669 to 69,971 _01871 BACOVA_01872: BACOVA_01872 - hypothetical protein, at 69,976 to 71,001 _01872 Position (kb) 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 68.692 kb on + strandat 68.694 kb on - strandat 68.703 kb on + strandat 68.704 kb on - strandat 68.707 kb on + strandat 68.708 kb on - strandat 68.708 kb on - strandat 68.721 kb on - strandat 68.820 kb on + strandat 68.820 kb on + strandat 68.820 kb on + strandat 68.820 kb on + strandat 68.821 kb on - strandat 68.821 kb on - strandat 68.843 kb on + strand, within BACOVA_01870at 68.843 kb on + strand, within BACOVA_01870at 68.843 kb on + strand, within BACOVA_01870at 68.843 kb on + strand, within BACOVA_01870at 68.844 kb on - strand, within BACOVA_01870at 68.848 kb on + strand, within BACOVA_01870at 68.849 kb on - strand, within BACOVA_01870at 68.872 kb on + strand, within BACOVA_01870at 68.899 kb on + strand, within BACOVA_01870at 68.899 kb on + strand, within BACOVA_01870at 68.900 kb on - strand, within BACOVA_01870at 68.902 kb on - strand, within BACOVA_01870at 68.967 kb on + strand, within BACOVA_01870at 68.967 kb on + strand, within BACOVA_01870at 68.967 kb on + strand, within BACOVA_01870at 69.026 kb on - strand, within BACOVA_01870at 69.041 kb on + strand, within BACOVA_01870at 69.042 kb on - strand, within BACOVA_01870at 69.043 kb on + strand, within BACOVA_01870at 69.043 kb on + strand, within BACOVA_01870at 69.050 kb on + strand, within BACOVA_01870at 69.070 kb on + strand, within BACOVA_01870at 69.119 kb on - strand, within BACOVA_01870at 69.168 kb on - strand, within BACOVA_01870at 69.215 kb on - strand, within BACOVA_01870at 69.229 kb on + strand, within BACOVA_01870at 69.229 kb on + strand, within BACOVA_01870at 69.260 kb on + strand, within BACOVA_01870at 69.303 kb on + strand, within BACOVA_01870at 69.304 kb on - strand, within BACOVA_01870at 69.326 kb on + strand, within BACOVA_01870at 69.332 kb on + strand, within BACOVA_01870at 69.349 kb on + strand, within BACOVA_01870at 69.384 kb on + strand, within BACOVA_01870at 69.385 kb on - strand, within BACOVA_01870at 69.385 kb on - strand, within BACOVA_01870at 69.407 kb on - strand, within BACOVA_01870at 69.449 kb on - strand, within BACOVA_01870at 69.449 kb on - strand, within BACOVA_01870at 69.449 kb on - strand, within BACOVA_01870at 69.595 kb on + strandat 69.595 kb on - strandat 69.597 kb on + strandat 69.644 kb on - strandat 69.664 kb on + strandat 69.664 kb on + strandat 69.664 kb on + strandat 69.665 kb on - strandat 69.665 kb on - strandat 69.668 kb on + strandat 69.669 kb on - strandat 69.669 kb on - strandat 69.705 kb on - strand, within BACOVA_01871at 69.705 kb on - strand, within BACOVA_01871at 69.718 kb on + strand, within BACOVA_01871at 69.718 kb on + strand, within BACOVA_01871at 69.719 kb on - strand, within BACOVA_01871at 69.764 kb on + strand, within BACOVA_01871at 69.765 kb on - strand, within BACOVA_01871at 69.802 kb on + strand, within BACOVA_01871at 69.803 kb on - strand, within BACOVA_01871at 69.914 kb on - strand, within BACOVA_01871at 69.915 kb on + strand, within BACOVA_01871at 69.915 kb on + strand, within BACOVA_01871at 69.962 kb on + strandat 69.972 kb on + strandat 69.972 kb on + strandat 69.973 kb on - strandat 69.977 kb on + strandat 69.978 kb on - strandat 69.978 kb on - strandat 69.978 kb on - strandat 69.993 kb on + strandat 69.993 kb on + strandat 69.993 kb on + strandat 69.994 kb on - strandat 70.006 kb on + strandat 70.011 kb on - strandat 70.033 kb on - strandat 70.092 kb on + strand, within BACOVA_01872at 70.092 kb on + strand, within BACOVA_01872at 70.093 kb on - strand, within BACOVA_01872at 70.095 kb on - strand, within BACOVA_01872at 70.095 kb on - strand, within BACOVA_01872at 70.115 kb on + strand, within BACOVA_01872at 70.115 kb on + strand, within BACOVA_01872at 70.116 kb on - strand, within BACOVA_01872at 70.116 kb on - strand, within BACOVA_01872at 70.134 kb on - strand, within BACOVA_01872at 70.134 kb on - strand, within BACOVA_01872at 70.160 kb on - strand, within BACOVA_01872at 70.160 kb on - strand, within BACOVA_01872at 70.182 kb on + strand, within BACOVA_01872at 70.240 kb on + strand, within BACOVA_01872at 70.244 kb on + strand, within BACOVA_01872at 70.245 kb on - strand, within BACOVA_01872at 70.245 kb on - strand, within BACOVA_01872at 70.245 kb on - strand, within BACOVA_01872at 70.257 kb on + strand, within BACOVA_01872at 70.258 kb on - strand, within BACOVA_01872at 70.264 kb on + strand, within BACOVA_01872at 70.332 kb on + strand, within BACOVA_01872at 70.333 kb on - strand, within BACOVA_01872at 70.367 kb on + strand, within BACOVA_01872at 70.372 kb on - strand, within BACOVA_01872at 70.372 kb on - strand, within BACOVA_01872at 70.387 kb on + strand, within BACOVA_01872at 70.388 kb on - strand, within BACOVA_01872at 70.388 kb on - strand, within BACOVA_01872at 70.388 kb on - strand, within BACOVA_01872at 70.445 kb on + strand, within BACOVA_01872at 70.461 kb on - strand, within BACOVA_01872at 70.461 kb on - strand, within BACOVA_01872at 70.467 kb on + strand, within BACOVA_01872at 70.467 kb on + strand, within BACOVA_01872at 70.468 kb on - strand, within BACOVA_01872at 70.510 kb on + strand, within BACOVA_01872at 70.510 kb on + strand, within BACOVA_01872at 70.526 kb on + strand, within BACOVA_01872at 70.716 kb on - strand, within BACOVA_01872at 70.716 kb on - strand, within BACOVA_01872at 70.718 kb on - strand, within BACOVA_01872at 70.722 kb on + strand, within BACOVA_01872at 70.722 kb on + strand, within BACOVA_01872at 70.723 kb on - strand, within BACOVA_01872at 70.724 kb on + strand, within BACOVA_01872at 70.724 kb on + strand, within BACOVA_01872at 70.749 kb on + strand, within BACOVA_01872at 70.751 kb on + strand, within BACOVA_01872at 70.751 kb on + strand, within BACOVA_01872at 70.752 kb on - strand, within BACOVA_01872at 70.752 kb on - strand, within BACOVA_01872at 70.752 kb on - strand, within BACOVA_01872at 70.858 kb on + strand, within BACOVA_01872at 70.859 kb on - strand, within BACOVA_01872at 70.859 kb on - strand, within BACOVA_01872at 70.870 kb on - strand, within BACOVA_01872at 70.878 kb on - strand, within BACOVA_01872at 70.913 kb on + strandat 70.915 kb on + strandat 70.919 kb on + strandat 70.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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68,692 + -1.1
68,694 - -1.9
68,703 + -1.5
68,704 - -1.1
68,707 + +0.1
68,708 - +1.8
68,708 - -0.7
68,721 - +0.8
68,820 + +1.3
68,820 + -0.8
68,820 + +0.2
68,820 + -1.1
68,821 - -2.2
68,821 - +2.9
68,843 + BACOVA_01870 0.12 +1.0
68,843 + BACOVA_01870 0.12 -0.8
68,843 + BACOVA_01870 0.12 +1.3
68,843 + BACOVA_01870 0.12 -0.9
68,844 - BACOVA_01870 0.12 -0.7
68,848 + BACOVA_01870 0.12 +0.4
68,849 - BACOVA_01870 0.12 -0.2
68,872 + BACOVA_01870 0.15 -1.1
68,899 + BACOVA_01870 0.18 -0.1
68,899 + BACOVA_01870 0.18 +0.1
68,900 - BACOVA_01870 0.18 -1.3
68,902 - BACOVA_01870 0.19 -0.1
68,967 + BACOVA_01870 0.26 -1.3
68,967 + BACOVA_01870 0.26 -0.8
68,967 + BACOVA_01870 0.26 +0.3
69,026 - BACOVA_01870 0.33 +0.2
69,041 + BACOVA_01870 0.35 -0.3
69,042 - BACOVA_01870 0.35 -1.4
69,043 + BACOVA_01870 0.35 -0.4
69,043 + BACOVA_01870 0.35 -0.7
69,050 + BACOVA_01870 0.36 +0.8
69,070 + BACOVA_01870 0.38 +0.9
69,119 - BACOVA_01870 0.44 +0.2
69,168 - BACOVA_01870 0.49 -1.4
69,215 - BACOVA_01870 0.55 +0.2
69,229 + BACOVA_01870 0.56 +0.2
69,229 + BACOVA_01870 0.56 +0.4
69,260 + BACOVA_01870 0.60 +0.9
69,303 + BACOVA_01870 0.65 +0.1
69,304 - BACOVA_01870 0.65 -0.1
69,326 + BACOVA_01870 0.68 -0.9
69,332 + BACOVA_01870 0.68 -0.0
69,349 + BACOVA_01870 0.70 +0.5
69,384 + BACOVA_01870 0.74 +0.6
69,385 - BACOVA_01870 0.74 -0.9
69,385 - BACOVA_01870 0.74 -0.9
69,407 - BACOVA_01870 0.77 +1.0
69,449 - BACOVA_01870 0.82 -1.1
69,449 - BACOVA_01870 0.82 -0.4
69,449 - BACOVA_01870 0.82 -1.7
69,595 + -0.5
69,595 - +0.0
69,597 + -0.3
69,644 - +0.3
69,664 + -0.3
69,664 + -0.5
69,664 + -1.1
69,665 - -0.9
69,665 - -2.1
69,668 + -0.1
69,669 - -0.5
69,669 - -2.5
69,705 - BACOVA_01871 0.12 +1.3
69,705 - BACOVA_01871 0.12 +2.2
69,718 + BACOVA_01871 0.16 +0.4
69,718 + BACOVA_01871 0.16 +1.2
69,719 - BACOVA_01871 0.17 -2.1
69,764 + BACOVA_01871 0.31 +1.0
69,765 - BACOVA_01871 0.32 +0.3
69,802 + BACOVA_01871 0.44 -1.2
69,803 - BACOVA_01871 0.44 -0.2
69,914 - BACOVA_01871 0.81 -0.2
69,915 + BACOVA_01871 0.81 +0.0
69,915 + BACOVA_01871 0.81 -1.7
69,962 + -0.9
69,972 + -1.2
69,972 + +0.9
69,973 - +1.2
69,977 + +0.6
69,978 - +0.1
69,978 - -0.2
69,978 - +1.0
69,993 + -2.7
69,993 + +0.3
69,993 + +0.9
69,994 - +0.3
70,006 + +0.1
70,011 - +0.7
70,033 - +1.8
70,092 + BACOVA_01872 0.11 -2.1
70,092 + BACOVA_01872 0.11 +1.0
70,093 - BACOVA_01872 0.11 +1.3
70,095 - BACOVA_01872 0.12 -3.3
70,095 - BACOVA_01872 0.12 -0.3
70,115 + BACOVA_01872 0.14 +1.8
70,115 + BACOVA_01872 0.14 -1.1
70,116 - BACOVA_01872 0.14 -0.4
70,116 - BACOVA_01872 0.14 +0.8
70,134 - BACOVA_01872 0.15 -0.2
70,134 - BACOVA_01872 0.15 +0.6
70,160 - BACOVA_01872 0.18 -0.3
70,160 - BACOVA_01872 0.18 -0.7
70,182 + BACOVA_01872 0.20 +0.8
70,240 + BACOVA_01872 0.26 +0.3
70,244 + BACOVA_01872 0.26 +0.7
70,245 - BACOVA_01872 0.26 -0.7
70,245 - BACOVA_01872 0.26 -0.6
70,245 - BACOVA_01872 0.26 -0.5
70,257 + BACOVA_01872 0.27 -1.3
70,258 - BACOVA_01872 0.27 -1.1
70,264 + BACOVA_01872 0.28 +0.5
70,332 + BACOVA_01872 0.35 +0.0
70,333 - BACOVA_01872 0.35 -1.2
70,367 + BACOVA_01872 0.38 +0.5
70,372 - BACOVA_01872 0.39 -0.3
70,372 - BACOVA_01872 0.39 -0.3
70,387 + BACOVA_01872 0.40 +0.5
70,388 - BACOVA_01872 0.40 -1.2
70,388 - BACOVA_01872 0.40 -0.6
70,388 - BACOVA_01872 0.40 -0.4
70,445 + BACOVA_01872 0.46 -0.7
70,461 - BACOVA_01872 0.47 +0.6
70,461 - BACOVA_01872 0.47 -1.4
70,467 + BACOVA_01872 0.48 -0.1
70,467 + BACOVA_01872 0.48 -1.0
70,468 - BACOVA_01872 0.48 -0.2
70,510 + BACOVA_01872 0.52 -1.1
70,510 + BACOVA_01872 0.52 +1.2
70,526 + BACOVA_01872 0.54 -0.5
70,716 - BACOVA_01872 0.72 +0.7
70,716 - BACOVA_01872 0.72 -0.6
70,718 - BACOVA_01872 0.72 -1.0
70,722 + BACOVA_01872 0.73 -0.2
70,722 + BACOVA_01872 0.73 -0.1
70,723 - BACOVA_01872 0.73 -0.0
70,724 + BACOVA_01872 0.73 -0.3
70,724 + BACOVA_01872 0.73 -0.4
70,749 + BACOVA_01872 0.75 +0.1
70,751 + BACOVA_01872 0.76 -0.9
70,751 + BACOVA_01872 0.76 -0.3
70,752 - BACOVA_01872 0.76 -1.3
70,752 - BACOVA_01872 0.76 +0.5
70,752 - BACOVA_01872 0.76 +0.1
70,858 + BACOVA_01872 0.86 -1.5
70,859 - BACOVA_01872 0.86 -1.8
70,859 - BACOVA_01872 0.86 -0.6
70,870 - BACOVA_01872 0.87 -0.3
70,878 - BACOVA_01872 0.88 +1.5
70,913 + +0.5
70,915 + -0.5
70,919 + -0.1
70,930 - -1.3

Or see this region's nucleotide sequence