Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01715 and BACOVA_01716 are separated by 87 nucleotides BACOVA_01716 and BACOVA_01717 are separated by 180 nucleotides
BACOVA_01715: BACOVA_01715 - aldose 1-epimerase, at 140,590 to 141,729
_01715
BACOVA_01716: BACOVA_01716 - hypothetical protein, at 141,817 to 141,924
_01716
BACOVA_01717: BACOVA_01717 - carbohydrate binding domain protein, at 142,105 to 144,087
_01717
Position (kb) 141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 140.855 kb on - strand, within BACOVA_01715 at 140.901 kb on - strand, within BACOVA_01715 at 140.901 kb on - strand, within BACOVA_01715 at 140.949 kb on + strand, within BACOVA_01715 at 141.018 kb on + strand, within BACOVA_01715 at 141.024 kb on + strand, within BACOVA_01715 at 141.039 kb on + strand, within BACOVA_01715 at 141.039 kb on + strand, within BACOVA_01715 at 141.044 kb on + strand, within BACOVA_01715 at 141.059 kb on + strand, within BACOVA_01715 at 141.059 kb on + strand, within BACOVA_01715 at 141.059 kb on + strand, within BACOVA_01715 at 141.060 kb on - strand, within BACOVA_01715 at 141.064 kb on + strand, within BACOVA_01715 at 141.064 kb on + strand, within BACOVA_01715 at 141.065 kb on - strand, within BACOVA_01715 at 141.065 kb on - strand, within BACOVA_01715 at 141.065 kb on - strand, within BACOVA_01715 at 141.126 kb on + strand, within BACOVA_01715 at 141.127 kb on - strand, within BACOVA_01715 at 141.151 kb on - strand, within BACOVA_01715 at 141.161 kb on + strand, within BACOVA_01715 at 141.165 kb on + strand, within BACOVA_01715 at 141.305 kb on + strand, within BACOVA_01715 at 141.305 kb on + strand, within BACOVA_01715 at 141.305 kb on + strand, within BACOVA_01715 at 141.306 kb on - strand, within BACOVA_01715 at 141.423 kb on + strand, within BACOVA_01715 at 141.445 kb on + strand, within BACOVA_01715 at 141.453 kb on + strand, within BACOVA_01715 at 141.454 kb on - strand, within BACOVA_01715 at 141.454 kb on - strand, within BACOVA_01715 at 141.455 kb on + strand, within BACOVA_01715 at 141.455 kb on + strand, within BACOVA_01715 at 141.456 kb on - strand, within BACOVA_01715 at 141.456 kb on - strand, within BACOVA_01715 at 141.484 kb on + strand, within BACOVA_01715 at 141.498 kb on + strand, within BACOVA_01715 at 141.499 kb on - strand, within BACOVA_01715 at 141.532 kb on - strand, within BACOVA_01715 at 141.556 kb on + strand, within BACOVA_01715 at 141.557 kb on - strand, within BACOVA_01715 at 141.557 kb on - strand, within BACOVA_01715 at 141.557 kb on - strand, within BACOVA_01715 at 141.565 kb on - strand, within BACOVA_01715 at 141.580 kb on + strand, within BACOVA_01715 at 141.586 kb on - strand, within BACOVA_01715 at 141.586 kb on - strand, within BACOVA_01715 at 141.588 kb on - strand, within BACOVA_01715 at 141.830 kb on + strand, within BACOVA_01716 at 141.830 kb on + strand, within BACOVA_01716 at 141.839 kb on + strand, within BACOVA_01716 at 141.840 kb on - strand, within BACOVA_01716 at 141.864 kb on - strand, within BACOVA_01716 at 141.864 kb on - strand, within BACOVA_01716 at 141.871 kb on - strand, within BACOVA_01716 at 141.872 kb on + strand, within BACOVA_01716 at 141.906 kb on + strand, within BACOVA_01716 at 141.907 kb on - strand, within BACOVA_01716 at 142.020 kb on + strand at 142.020 kb on + strand at 142.021 kb on - strand at 142.076 kb on + strand at 142.081 kb on - strand at 142.082 kb on + strand at 142.085 kb on - strand at 142.115 kb on - strand at 142.136 kb on + strand at 142.146 kb on + strand at 142.147 kb on - strand at 142.147 kb on - strand at 142.221 kb on + strand at 142.221 kb on + strand at 142.221 kb on + strand at 142.222 kb on - strand at 142.222 kb on - strand at 142.224 kb on + strand at 142.224 kb on + strand at 142.224 kb on + strand at 142.225 kb on - strand at 142.225 kb on - strand at 142.225 kb on - strand at 142.225 kb on - strand at 142.228 kb on + strand at 142.229 kb on - strand at 142.229 kb on - strand at 142.355 kb on + strand, within BACOVA_01717 at 142.356 kb on - strand, within BACOVA_01717 at 142.422 kb on + strand, within BACOVA_01717 at 142.422 kb on + strand, within BACOVA_01717 at 142.423 kb on - strand, within BACOVA_01717 at 142.423 kb on - strand, within BACOVA_01717 at 142.522 kb on - strand, within BACOVA_01717 at 142.551 kb on - strand, within BACOVA_01717 at 142.599 kb on + strand, within BACOVA_01717 at 142.611 kb on + strand, within BACOVA_01717 at 142.653 kb on + strand, within BACOVA_01717 at 142.653 kb on + strand, within BACOVA_01717 at 142.671 kb on - strand, within BACOVA_01717 at 142.737 kb on + strand, within BACOVA_01717 at 142.775 kb on + strand, within BACOVA_01717 at 142.775 kb on + strand, within BACOVA_01717 at 142.776 kb on - strand, within BACOVA_01717 at 142.836 kb on - strand, within BACOVA_01717
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 140,855 - BACOVA_01715 0.23 -1.0 140,901 - BACOVA_01715 0.27 +0.3 140,901 - BACOVA_01715 0.27 +0.6 140,949 + BACOVA_01715 0.31 -1.5 141,018 + BACOVA_01715 0.38 -2.6 141,024 + BACOVA_01715 0.38 -2.5 141,039 + BACOVA_01715 0.39 +0.8 141,039 + BACOVA_01715 0.39 -3.1 141,044 + BACOVA_01715 0.40 +0.0 141,059 + BACOVA_01715 0.41 -1.1 141,059 + BACOVA_01715 0.41 -0.6 141,059 + BACOVA_01715 0.41 -2.0 141,060 - BACOVA_01715 0.41 +0.6 141,064 + BACOVA_01715 0.42 -1.5 141,064 + BACOVA_01715 0.42 -2.6 141,065 - BACOVA_01715 0.42 +0.6 141,065 - BACOVA_01715 0.42 +0.3 141,065 - BACOVA_01715 0.42 -1.1 141,126 + BACOVA_01715 0.47 +0.1 141,127 - BACOVA_01715 0.47 -0.1 141,151 - BACOVA_01715 0.49 -0.2 141,161 + BACOVA_01715 0.50 -2.7 141,165 + BACOVA_01715 0.50 -1.2 141,305 + BACOVA_01715 0.63 +1.0 141,305 + BACOVA_01715 0.63 -2.3 141,305 + BACOVA_01715 0.63 -2.6 141,306 - BACOVA_01715 0.63 +0.4 141,423 + BACOVA_01715 0.73 -1.7 141,445 + BACOVA_01715 0.75 -2.7 141,453 + BACOVA_01715 0.76 -0.1 141,454 - BACOVA_01715 0.76 -2.1 141,454 - BACOVA_01715 0.76 -0.3 141,455 + BACOVA_01715 0.76 -1.7 141,455 + BACOVA_01715 0.76 -1.2 141,456 - BACOVA_01715 0.76 -0.9 141,456 - BACOVA_01715 0.76 -0.7 141,484 + BACOVA_01715 0.78 +0.8 141,498 + BACOVA_01715 0.80 -1.2 141,499 - BACOVA_01715 0.80 +0.4 141,532 - BACOVA_01715 0.83 -1.0 141,556 + BACOVA_01715 0.85 -2.6 141,557 - BACOVA_01715 0.85 -0.9 141,557 - BACOVA_01715 0.85 -1.9 141,557 - BACOVA_01715 0.85 -2.1 141,565 - BACOVA_01715 0.86 -2.1 141,580 + BACOVA_01715 0.87 +1.3 141,586 - BACOVA_01715 0.87 -1.3 141,586 - BACOVA_01715 0.87 -0.9 141,588 - BACOVA_01715 0.88 -1.3 141,830 + BACOVA_01716 0.12 -1.9 141,830 + BACOVA_01716 0.12 -1.5 141,839 + BACOVA_01716 0.20 -1.1 141,840 - BACOVA_01716 0.21 +1.6 141,864 - BACOVA_01716 0.44 -0.6 141,864 - BACOVA_01716 0.44 -0.3 141,871 - BACOVA_01716 0.50 +0.5 141,872 + BACOVA_01716 0.51 -0.1 141,906 + BACOVA_01716 0.82 -1.5 141,907 - BACOVA_01716 0.83 +0.3 142,020 + +0.0 142,020 + +1.3 142,021 - -1.0 142,076 + -0.1 142,081 - +0.3 142,082 + +0.6 142,085 - +0.4 142,115 - +0.1 142,136 + +0.7 142,146 + +1.0 142,147 - -0.7 142,147 - +2.9 142,221 + -0.2 142,221 + -0.0 142,221 + -1.4 142,222 - -0.0 142,222 - -1.8 142,224 + +0.1 142,224 + -1.9 142,224 + +1.3 142,225 - -0.1 142,225 - +0.0 142,225 - +2.0 142,225 - -0.3 142,228 + +0.6 142,229 - -1.3 142,229 - -0.2 142,355 + BACOVA_01717 0.13 -1.4 142,356 - BACOVA_01717 0.13 +2.3 142,422 + BACOVA_01717 0.16 +0.3 142,422 + BACOVA_01717 0.16 -1.4 142,423 - BACOVA_01717 0.16 -0.5 142,423 - BACOVA_01717 0.16 -0.1 142,522 - BACOVA_01717 0.21 -1.0 142,551 - BACOVA_01717 0.22 +0.0 142,599 + BACOVA_01717 0.25 +1.5 142,611 + BACOVA_01717 0.26 +0.6 142,653 + BACOVA_01717 0.28 -1.2 142,653 + BACOVA_01717 0.28 -1.5 142,671 - BACOVA_01717 0.29 +1.0 142,737 + BACOVA_01717 0.32 +0.6 142,775 + BACOVA_01717 0.34 -0.4 142,775 + BACOVA_01717 0.34 +0.0 142,776 - BACOVA_01717 0.34 +0.4 142,836 - BACOVA_01717 0.37 +1.8
Or see this region's nucleotide sequence