Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01471

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01469 and BACOVA_01470 are separated by 44 nucleotidesBACOVA_01470 and BACOVA_01471 are separated by 4 nucleotidesBACOVA_01471 and BACOVA_01472 are separated by 3 nucleotidesBACOVA_01472 and BACOVA_01473 are separated by 17 nucleotides BACOVA_01469: BACOVA_01469 - hypothetical protein, at 127,075 to 127,605 _01469 BACOVA_01470: BACOVA_01470 - hypothetical protein, at 127,650 to 128,375 _01470 BACOVA_01471: BACOVA_01471 - transcriptional regulator, TetR family, at 128,380 to 128,985 _01471 BACOVA_01472: BACOVA_01472 - hypothetical protein, at 128,989 to 129,105 _01472 BACOVA_01473: BACOVA_01473 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 129,123 to 129,902 _01473 Position (kb) 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 127.475 kb on + strand, within BACOVA_01469at 127.476 kb on - strand, within BACOVA_01469at 127.476 kb on - strand, within BACOVA_01469at 127.510 kb on - strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.511 kb on + strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.512 kb on - strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.515 kb on + strand, within BACOVA_01469at 127.516 kb on - strand, within BACOVA_01469at 127.593 kb on + strandat 127.605 kb on + strandat 127.605 kb on + strandat 127.632 kb on + strandat 127.645 kb on + strandat 127.651 kb on + strandat 127.652 kb on - strandat 127.652 kb on - strandat 127.660 kb on + strandat 127.671 kb on - strandat 127.676 kb on + strandat 127.719 kb on - strandat 127.730 kb on + strand, within BACOVA_01470at 127.730 kb on + strand, within BACOVA_01470at 127.730 kb on + strand, within BACOVA_01470at 127.770 kb on - strand, within BACOVA_01470at 127.852 kb on + strand, within BACOVA_01470at 127.853 kb on - strand, within BACOVA_01470at 127.988 kb on + strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.036 kb on - strand, within BACOVA_01470at 128.037 kb on + strand, within BACOVA_01470at 128.038 kb on - strand, within BACOVA_01470at 128.038 kb on - strand, within BACOVA_01470at 128.050 kb on + strand, within BACOVA_01470at 128.150 kb on - strand, within BACOVA_01470at 128.165 kb on - strand, within BACOVA_01470at 128.178 kb on - strand, within BACOVA_01470at 128.275 kb on - strand, within BACOVA_01470at 128.279 kb on + strand, within BACOVA_01470at 128.288 kb on + strand, within BACOVA_01470at 128.301 kb on + strand, within BACOVA_01470at 128.325 kb on - strandat 128.358 kb on + strandat 128.382 kb on - strandat 128.474 kb on + strand, within BACOVA_01471at 128.507 kb on + strand, within BACOVA_01471at 128.640 kb on + strand, within BACOVA_01471at 128.683 kb on - strand, within BACOVA_01471at 128.683 kb on - strand, within BACOVA_01471at 128.685 kb on - strand, within BACOVA_01471at 128.783 kb on + strand, within BACOVA_01471at 128.844 kb on + strand, within BACOVA_01471at 128.844 kb on + strand, within BACOVA_01471at 128.844 kb on + strand, within BACOVA_01471at 128.876 kb on - strand, within BACOVA_01471at 128.967 kb on + strandat 128.967 kb on + strandat 128.968 kb on - strandat 128.971 kb on - strandat 128.971 kb on - strandat 128.986 kb on - strandat 129.067 kb on - strand, within BACOVA_01472at 129.083 kb on + strand, within BACOVA_01472at 129.083 kb on + strand, within BACOVA_01472at 129.083 kb on + strand, within BACOVA_01472at 129.084 kb on - strand, within BACOVA_01472at 129.104 kb on - strandat 129.106 kb on + strandat 129.107 kb on - strandat 129.107 kb on - strandat 129.107 kb on - strandat 129.107 kb on - strandat 129.227 kb on + strand, within BACOVA_01473at 129.227 kb on + strand, within BACOVA_01473at 129.284 kb on + strand, within BACOVA_01473at 129.285 kb on - strand, within BACOVA_01473at 129.285 kb on - strand, within BACOVA_01473at 129.287 kb on + strand, within BACOVA_01473at 129.291 kb on + strand, within BACOVA_01473at 129.291 kb on + strand, within BACOVA_01473at 129.292 kb on - strand, within BACOVA_01473at 129.327 kb on - strand, within BACOVA_01473at 129.331 kb on - strand, within BACOVA_01473at 129.392 kb on - strand, within BACOVA_01473at 129.432 kb on + strand, within BACOVA_01473at 129.438 kb on - strand, within BACOVA_01473at 129.466 kb on - strand, within BACOVA_01473at 129.474 kb on + strand, within BACOVA_01473at 129.474 kb on + strand, within BACOVA_01473at 129.475 kb on - strand, within BACOVA_01473at 129.512 kb on + strand, within BACOVA_01473at 129.535 kb on + strand, within BACOVA_01473at 129.536 kb on - strand, within BACOVA_01473at 129.536 kb on - strand, within BACOVA_01473at 129.577 kb on + strand, within BACOVA_01473at 129.578 kb on - strand, within BACOVA_01473at 129.602 kb on + strand, within BACOVA_01473at 129.603 kb on - strand, within BACOVA_01473at 129.631 kb on - strand, within BACOVA_01473at 129.631 kb on - strand, within BACOVA_01473at 129.635 kb on + strand, within BACOVA_01473at 129.638 kb on + strand, within BACOVA_01473at 129.651 kb on + strand, within BACOVA_01473at 129.722 kb on - strand, within BACOVA_01473at 129.804 kb on + strand, within BACOVA_01473at 129.879 kb on + strandat 129.880 kb on - strandat 129.880 kb on - strandat 129.902 kb on + strandat 129.903 kb on - strandat 129.903 kb on - strandat 129.905 kb on - strandat 129.905 kb on - strandat 129.922 kb on + strandat 129.923 kb on - strandat 129.978 kb on + strandat 129.978 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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127,475 + BACOVA_01469 0.75 +0.9
127,476 - BACOVA_01469 0.76 +1.3
127,476 - BACOVA_01469 0.76 -0.0
127,510 - BACOVA_01469 0.82 -0.4
127,511 + BACOVA_01469 0.82 +5.4
127,511 + BACOVA_01469 0.82 +1.1
127,511 + BACOVA_01469 0.82 -0.3
127,511 + BACOVA_01469 0.82 +0.5
127,511 + BACOVA_01469 0.82 +0.7
127,511 + BACOVA_01469 0.82 +1.2
127,512 - BACOVA_01469 0.82 -2.4
127,512 - BACOVA_01469 0.82 +1.0
127,512 - BACOVA_01469 0.82 +0.7
127,512 - BACOVA_01469 0.82 +0.3
127,515 + BACOVA_01469 0.83 -1.7
127,515 + BACOVA_01469 0.83 +0.7
127,515 + BACOVA_01469 0.83 -1.7
127,516 - BACOVA_01469 0.83 -1.6
127,593 + +0.3
127,605 + -0.9
127,605 + -0.2
127,632 + +0.5
127,645 + -0.4
127,651 + +0.3
127,652 - +0.5
127,652 - +0.7
127,660 + -0.6
127,671 - +0.6
127,676 + -0.3
127,719 - -0.3
127,730 + BACOVA_01470 0.11 -0.6
127,730 + BACOVA_01470 0.11 +0.2
127,730 + BACOVA_01470 0.11 +0.2
127,770 - BACOVA_01470 0.17 -1.1
127,852 + BACOVA_01470 0.28 -0.3
127,853 - BACOVA_01470 0.28 -0.3
127,988 + BACOVA_01470 0.47 +0.3
128,036 - BACOVA_01470 0.53 +1.3
128,036 - BACOVA_01470 0.53 +1.8
128,036 - BACOVA_01470 0.53 -2.1
128,037 + BACOVA_01470 0.53 -0.4
128,038 - BACOVA_01470 0.53 -0.6
128,038 - BACOVA_01470 0.53 +0.2
128,050 + BACOVA_01470 0.55 +0.6
128,150 - BACOVA_01470 0.69 +0.4
128,165 - BACOVA_01470 0.71 +0.5
128,178 - BACOVA_01470 0.73 +1.1
128,275 - BACOVA_01470 0.86 +2.3
128,279 + BACOVA_01470 0.87 +2.7
128,288 + BACOVA_01470 0.88 +1.3
128,301 + BACOVA_01470 0.90 +0.7
128,325 - -0.4
128,358 + +0.2
128,382 - -0.1
128,474 + BACOVA_01471 0.16 -0.3
128,507 + BACOVA_01471 0.21 -0.6
128,640 + BACOVA_01471 0.43 -0.9
128,683 - BACOVA_01471 0.50 -0.9
128,683 - BACOVA_01471 0.50 +0.7
128,685 - BACOVA_01471 0.50 +1.1
128,783 + BACOVA_01471 0.67 -1.5
128,844 + BACOVA_01471 0.77 -0.6
128,844 + BACOVA_01471 0.77 -0.8
128,844 + BACOVA_01471 0.77 -0.9
128,876 - BACOVA_01471 0.82 -1.5
128,967 + +1.1
128,967 + -0.8
128,968 - -1.3
128,971 - -0.0
128,971 - +1.0
128,986 - +0.3
129,067 - BACOVA_01472 0.67 +1.3
129,083 + BACOVA_01472 0.80 +0.8
129,083 + BACOVA_01472 0.80 -0.6
129,083 + BACOVA_01472 0.80 +0.2
129,084 - BACOVA_01472 0.81 -0.5
129,104 - +0.0
129,106 + -1.3
129,107 - +2.1
129,107 - +0.7
129,107 - -0.4
129,107 - -0.3
129,227 + BACOVA_01473 0.13 -0.9
129,227 + BACOVA_01473 0.13 +1.3
129,284 + BACOVA_01473 0.21 -0.4
129,285 - BACOVA_01473 0.21 +0.7
129,285 - BACOVA_01473 0.21 +1.4
129,287 + BACOVA_01473 0.21 -1.5
129,291 + BACOVA_01473 0.22 +0.3
129,291 + BACOVA_01473 0.22 -0.0
129,292 - BACOVA_01473 0.22 -0.6
129,327 - BACOVA_01473 0.26 -0.3
129,331 - BACOVA_01473 0.27 -0.0
129,392 - BACOVA_01473 0.34 -0.3
129,432 + BACOVA_01473 0.40 -0.8
129,438 - BACOVA_01473 0.40 -2.2
129,466 - BACOVA_01473 0.44 +0.7
129,474 + BACOVA_01473 0.45 -1.9
129,474 + BACOVA_01473 0.45 -1.3
129,475 - BACOVA_01473 0.45 +2.8
129,512 + BACOVA_01473 0.50 +0.7
129,535 + BACOVA_01473 0.53 -1.8
129,536 - BACOVA_01473 0.53 +0.2
129,536 - BACOVA_01473 0.53 +0.2
129,577 + BACOVA_01473 0.58 +0.5
129,578 - BACOVA_01473 0.58 +0.5
129,602 + BACOVA_01473 0.61 +0.8
129,603 - BACOVA_01473 0.62 -0.7
129,631 - BACOVA_01473 0.65 +0.2
129,631 - BACOVA_01473 0.65 +0.2
129,635 + BACOVA_01473 0.66 +1.1
129,638 + BACOVA_01473 0.66 -1.1
129,651 + BACOVA_01473 0.68 -0.6
129,722 - BACOVA_01473 0.77 +0.0
129,804 + BACOVA_01473 0.87 +0.3
129,879 + +0.2
129,880 - +0.7
129,880 - -0.3
129,902 + -1.9
129,903 - +0.2
129,903 - +1.1
129,905 - -1.3
129,905 - -0.6
129,922 + +0.3
129,923 - -1.4
129,978 + -0.6
129,978 + -0.5

Or see this region's nucleotide sequence