Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01226

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01225 and BACOVA_01226 are separated by 19 nucleotidesBACOVA_01226 and BACOVA_01227 are separated by 25 nucleotides BACOVA_01225: BACOVA_01225 - hypothetical protein, at 4,126 to 5,688 _01225 BACOVA_01226: BACOVA_01226 - hypothetical protein, at 5,708 to 6,598 _01226 BACOVA_01227: BACOVA_01227 - SusD family protein, at 6,624 to 8,144 _01227 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.776 kb on + strand, within BACOVA_01225at 4.776 kb on + strand, within BACOVA_01225at 4.785 kb on + strand, within BACOVA_01225at 4.833 kb on + strand, within BACOVA_01225at 4.833 kb on + strand, within BACOVA_01225at 4.835 kb on + strand, within BACOVA_01225at 4.836 kb on - strand, within BACOVA_01225at 4.850 kb on + strand, within BACOVA_01225at 4.851 kb on - strand, within BACOVA_01225at 4.851 kb on - strand, within BACOVA_01225at 4.854 kb on + strand, within BACOVA_01225at 4.854 kb on + strand, within BACOVA_01225at 4.855 kb on - strand, within BACOVA_01225at 4.856 kb on + strand, within BACOVA_01225at 4.856 kb on + strand, within BACOVA_01225at 4.882 kb on + strand, within BACOVA_01225at 4.904 kb on + strand, within BACOVA_01225at 4.917 kb on + strand, within BACOVA_01225at 4.917 kb on + strand, within BACOVA_01225at 4.951 kb on - strand, within BACOVA_01225at 4.951 kb on - strand, within BACOVA_01225at 4.969 kb on - strand, within BACOVA_01225at 4.971 kb on + strand, within BACOVA_01225at 4.972 kb on - strand, within BACOVA_01225at 4.980 kb on + strand, within BACOVA_01225at 4.981 kb on - strand, within BACOVA_01225at 5.131 kb on - strand, within BACOVA_01225at 5.188 kb on + strand, within BACOVA_01225at 5.188 kb on + strand, within BACOVA_01225at 5.189 kb on - strand, within BACOVA_01225at 5.238 kb on - strand, within BACOVA_01225at 5.238 kb on - strand, within BACOVA_01225at 5.250 kb on - strand, within BACOVA_01225at 5.272 kb on + strand, within BACOVA_01225at 5.306 kb on + strand, within BACOVA_01225at 5.339 kb on - strand, within BACOVA_01225at 5.412 kb on + strand, within BACOVA_01225at 5.413 kb on - strand, within BACOVA_01225at 5.415 kb on + strand, within BACOVA_01225at 5.487 kb on - strand, within BACOVA_01225at 5.521 kb on - strand, within BACOVA_01225at 5.527 kb on - strand, within BACOVA_01225at 5.569 kb on + strandat 5.620 kb on - strandat 5.674 kb on + strandat 5.674 kb on + strandat 5.692 kb on + strandat 5.704 kb on + strandat 5.704 kb on + strandat 5.709 kb on + strandat 5.709 kb on + strandat 5.775 kb on + strandat 5.776 kb on - strandat 5.776 kb on - strandat 5.779 kb on + strandat 5.779 kb on + strandat 5.805 kb on + strand, within BACOVA_01226at 5.809 kb on + strand, within BACOVA_01226at 5.809 kb on + strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.815 kb on + strand, within BACOVA_01226at 5.817 kb on + strand, within BACOVA_01226at 5.819 kb on + strand, within BACOVA_01226at 5.820 kb on - strand, within BACOVA_01226at 5.840 kb on + strand, within BACOVA_01226at 5.840 kb on + strand, within BACOVA_01226at 5.841 kb on - strand, within BACOVA_01226at 5.845 kb on + strand, within BACOVA_01226at 5.846 kb on - strand, within BACOVA_01226at 5.846 kb on - strand, within BACOVA_01226at 5.847 kb on + strand, within BACOVA_01226at 5.851 kb on - strand, within BACOVA_01226at 5.875 kb on + strand, within BACOVA_01226at 5.875 kb on + strand, within BACOVA_01226at 5.876 kb on - strand, within BACOVA_01226at 5.876 kb on - strand, within BACOVA_01226at 5.926 kb on + strand, within BACOVA_01226at 5.927 kb on - strand, within BACOVA_01226at 5.927 kb on - strand, within BACOVA_01226at 5.930 kb on + strand, within BACOVA_01226at 5.932 kb on + strand, within BACOVA_01226at 5.987 kb on - strand, within BACOVA_01226at 6.023 kb on + strand, within BACOVA_01226at 6.023 kb on + strand, within BACOVA_01226at 6.024 kb on - strand, within BACOVA_01226at 6.035 kb on - strand, within BACOVA_01226at 6.093 kb on + strand, within BACOVA_01226at 6.126 kb on + strand, within BACOVA_01226at 6.127 kb on - strand, within BACOVA_01226at 6.127 kb on - strand, within BACOVA_01226at 6.140 kb on - strand, within BACOVA_01226at 6.142 kb on + strand, within BACOVA_01226at 6.193 kb on - strand, within BACOVA_01226at 6.203 kb on + strand, within BACOVA_01226at 6.270 kb on + strand, within BACOVA_01226at 6.342 kb on + strand, within BACOVA_01226at 6.342 kb on + strand, within BACOVA_01226at 6.364 kb on + strand, within BACOVA_01226at 6.364 kb on + strand, within BACOVA_01226at 6.406 kb on - strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.426 kb on - strand, within BACOVA_01226at 6.469 kb on - strand, within BACOVA_01226at 6.472 kb on + strand, within BACOVA_01226at 6.472 kb on + strand, within BACOVA_01226at 6.476 kb on + strand, within BACOVA_01226at 6.535 kb on + strandat 6.535 kb on + strandat 6.536 kb on - strandat 6.573 kb on - strandat 6.573 kb on - strandat 6.609 kb on + strandat 6.609 kb on + strandat 6.620 kb on + strandat 6.620 kb on + strandat 6.626 kb on - strandat 6.728 kb on + strandat 6.728 kb on + strandat 6.761 kb on + strandat 6.830 kb on + strand, within BACOVA_01227at 6.852 kb on - strand, within BACOVA_01227at 6.879 kb on - strand, within BACOVA_01227at 6.946 kb on + strand, within BACOVA_01227at 6.946 kb on + strand, within BACOVA_01227at 6.946 kb on + strand, within BACOVA_01227at 6.947 kb on - strand, within BACOVA_01227at 6.947 kb on - strand, within BACOVA_01227at 6.988 kb on + strand, within BACOVA_01227at 7.045 kb on - strand, within BACOVA_01227at 7.046 kb on + strand, within BACOVA_01227at 7.046 kb on + strand, within BACOVA_01227at 7.064 kb on + strand, within BACOVA_01227at 7.065 kb on - strand, within BACOVA_01227at 7.135 kb on + strand, within BACOVA_01227at 7.156 kb on + strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.183 kb on - strand, within BACOVA_01227at 7.187 kb on - strand, within BACOVA_01227at 7.197 kb on - strand, within BACOVA_01227at 7.205 kb on + strand, within BACOVA_01227at 7.205 kb on + strand, within BACOVA_01227at 7.206 kb on - strand, within BACOVA_01227at 7.207 kb on + strand, within BACOVA_01227at 7.208 kb on - strand, within BACOVA_01227at 7.214 kb on - strand, within BACOVA_01227at 7.224 kb on + strand, within BACOVA_01227at 7.224 kb on + strand, within BACOVA_01227at 7.247 kb on - strand, within BACOVA_01227at 7.267 kb on - strand, within BACOVA_01227at 7.293 kb on - strand, within BACOVA_01227at 7.293 kb on - strand, within BACOVA_01227at 7.298 kb on - strand, within BACOVA_01227at 7.307 kb on + strand, within BACOVA_01227at 7.307 kb on + strand, within BACOVA_01227at 7.310 kb on - strand, within BACOVA_01227at 7.324 kb on + strand, within BACOVA_01227at 7.337 kb on - strand, within BACOVA_01227at 7.350 kb on - strand, within BACOVA_01227at 7.359 kb on + strand, within BACOVA_01227at 7.360 kb on - strand, within BACOVA_01227at 7.367 kb on - strand, within BACOVA_01227at 7.374 kb on - strand, within BACOVA_01227at 7.374 kb on - strand, within BACOVA_01227at 7.381 kb on - strand, within BACOVA_01227at 7.388 kb on + strand, within BACOVA_01227at 7.396 kb on + strand, within BACOVA_01227at 7.424 kb on + strand, within BACOVA_01227at 7.426 kb on + strand, within BACOVA_01227at 7.432 kb on + strand, within BACOVA_01227at 7.436 kb on + strand, within BACOVA_01227at 7.437 kb on - strand, within BACOVA_01227at 7.445 kb on - strand, within BACOVA_01227at 7.445 kb on - strand, within BACOVA_01227at 7.474 kb on - strand, within BACOVA_01227at 7.486 kb on + strand, within BACOVA_01227at 7.499 kb on + strand, within BACOVA_01227at 7.522 kb on + strand, within BACOVA_01227at 7.572 kb on + strand, within BACOVA_01227

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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4,776 + BACOVA_01225 0.42 +0.0
4,776 + BACOVA_01225 0.42 -1.7
4,785 + BACOVA_01225 0.42 +1.3
4,833 + BACOVA_01225 0.45 +0.7
4,833 + BACOVA_01225 0.45 -1.5
4,835 + BACOVA_01225 0.45 -0.1
4,836 - BACOVA_01225 0.45 +0.9
4,850 + BACOVA_01225 0.46 -1.0
4,851 - BACOVA_01225 0.46 +0.8
4,851 - BACOVA_01225 0.46 -0.8
4,854 + BACOVA_01225 0.47 +1.0
4,854 + BACOVA_01225 0.47 +1.9
4,855 - BACOVA_01225 0.47 +0.6
4,856 + BACOVA_01225 0.47 +0.5
4,856 + BACOVA_01225 0.47 +1.6
4,882 + BACOVA_01225 0.48 -0.5
4,904 + BACOVA_01225 0.50 -0.6
4,917 + BACOVA_01225 0.51 -0.3
4,917 + BACOVA_01225 0.51 +0.2
4,951 - BACOVA_01225 0.53 -1.8
4,951 - BACOVA_01225 0.53 -1.3
4,969 - BACOVA_01225 0.54 +1.8
4,971 + BACOVA_01225 0.54 -1.6
4,972 - BACOVA_01225 0.54 +0.1
4,980 + BACOVA_01225 0.55 +0.8
4,981 - BACOVA_01225 0.55 -1.5
5,131 - BACOVA_01225 0.64 -0.3
5,188 + BACOVA_01225 0.68 +1.0
5,188 + BACOVA_01225 0.68 -0.8
5,189 - BACOVA_01225 0.68 +1.5
5,238 - BACOVA_01225 0.71 +0.4
5,238 - BACOVA_01225 0.71 -0.0
5,250 - BACOVA_01225 0.72 +1.0
5,272 + BACOVA_01225 0.73 -0.4
5,306 + BACOVA_01225 0.75 +0.1
5,339 - BACOVA_01225 0.78 +2.0
5,412 + BACOVA_01225 0.82 -0.9
5,413 - BACOVA_01225 0.82 +0.4
5,415 + BACOVA_01225 0.82 -1.6
5,487 - BACOVA_01225 0.87 +0.5
5,521 - BACOVA_01225 0.89 +0.6
5,527 - BACOVA_01225 0.90 -0.6
5,569 + +0.1
5,620 - -0.7
5,674 + +0.4
5,674 + -1.5
5,692 + +2.3
5,704 + -0.5
5,704 + -1.1
5,709 + +0.1
5,709 + +0.3
5,775 + +0.4
5,776 - -0.3
5,776 - +0.3
5,779 + +1.3
5,779 + -1.3
5,805 + BACOVA_01226 0.11 -1.5
5,809 + BACOVA_01226 0.11 +0.4
5,809 + BACOVA_01226 0.11 +1.0
5,810 - BACOVA_01226 0.11 +1.0
5,810 - BACOVA_01226 0.11 +0.1
5,810 - BACOVA_01226 0.11 -0.5
5,815 + BACOVA_01226 0.12 -0.9
5,817 + BACOVA_01226 0.12 -0.7
5,819 + BACOVA_01226 0.12 -0.0
5,820 - BACOVA_01226 0.13 +1.2
5,840 + BACOVA_01226 0.15 +0.7
5,840 + BACOVA_01226 0.15 +0.0
5,841 - BACOVA_01226 0.15 -0.1
5,845 + BACOVA_01226 0.15 +1.0
5,846 - BACOVA_01226 0.15 +2.1
5,846 - BACOVA_01226 0.15 +1.4
5,847 + BACOVA_01226 0.16 -1.3
5,851 - BACOVA_01226 0.16 +2.0
5,875 + BACOVA_01226 0.19 -0.2
5,875 + BACOVA_01226 0.19 +1.8
5,876 - BACOVA_01226 0.19 +1.3
5,876 - BACOVA_01226 0.19 +1.3
5,926 + BACOVA_01226 0.24 -0.4
5,927 - BACOVA_01226 0.25 -0.6
5,927 - BACOVA_01226 0.25 +1.5
5,930 + BACOVA_01226 0.25 +1.4
5,932 + BACOVA_01226 0.25 +0.9
5,987 - BACOVA_01226 0.31 +1.0
6,023 + BACOVA_01226 0.35 +0.6
6,023 + BACOVA_01226 0.35 +0.2
6,024 - BACOVA_01226 0.35 -0.5
6,035 - BACOVA_01226 0.37 +0.7
6,093 + BACOVA_01226 0.43 +0.0
6,126 + BACOVA_01226 0.47 -0.8
6,127 - BACOVA_01226 0.47 -0.6
6,127 - BACOVA_01226 0.47 +0.1
6,140 - BACOVA_01226 0.48 +0.2
6,142 + BACOVA_01226 0.49 -0.9
6,193 - BACOVA_01226 0.54 +1.5
6,203 + BACOVA_01226 0.56 -0.8
6,270 + BACOVA_01226 0.63 -1.8
6,342 + BACOVA_01226 0.71 +0.5
6,342 + BACOVA_01226 0.71 +0.9
6,364 + BACOVA_01226 0.74 -0.3
6,364 + BACOVA_01226 0.74 -2.4
6,406 - BACOVA_01226 0.78 -0.3
6,415 + BACOVA_01226 0.79 -1.0
6,415 + BACOVA_01226 0.79 -1.2
6,415 + BACOVA_01226 0.79 -1.4
6,426 - BACOVA_01226 0.81 +0.8
6,469 - BACOVA_01226 0.85 -0.4
6,472 + BACOVA_01226 0.86 -1.2
6,472 + BACOVA_01226 0.86 -1.0
6,476 + BACOVA_01226 0.86 +1.6
6,535 + +1.1
6,535 + +0.1
6,536 - +1.1
6,573 - -0.2
6,573 - -0.4
6,609 + -0.4
6,609 + -1.4
6,620 + -0.7
6,620 + -0.6
6,626 - +0.4
6,728 + +0.4
6,728 + +0.2
6,761 + +0.7
6,830 + BACOVA_01227 0.14 -2.5
6,852 - BACOVA_01227 0.15 -0.5
6,879 - BACOVA_01227 0.17 -0.4
6,946 + BACOVA_01227 0.21 -1.6
6,946 + BACOVA_01227 0.21 +0.4
6,946 + BACOVA_01227 0.21 +0.6
6,947 - BACOVA_01227 0.21 +1.5
6,947 - BACOVA_01227 0.21 -0.6
6,988 + BACOVA_01227 0.24 +0.9
7,045 - BACOVA_01227 0.28 +0.8
7,046 + BACOVA_01227 0.28 -0.7
7,046 + BACOVA_01227 0.28 +1.6
7,064 + BACOVA_01227 0.29 -1.0
7,065 - BACOVA_01227 0.29 -0.6
7,135 + BACOVA_01227 0.34 -0.8
7,156 + BACOVA_01227 0.35 -1.3
7,157 - BACOVA_01227 0.35 +1.3
7,157 - BACOVA_01227 0.35 +0.1
7,157 - BACOVA_01227 0.35 +1.6
7,157 - BACOVA_01227 0.35 +1.1
7,183 - BACOVA_01227 0.37 -0.5
7,187 - BACOVA_01227 0.37 +0.6
7,197 - BACOVA_01227 0.38 -0.7
7,205 + BACOVA_01227 0.38 -0.6
7,205 + BACOVA_01227 0.38 -0.5
7,206 - BACOVA_01227 0.38 -0.1
7,207 + BACOVA_01227 0.38 -0.6
7,208 - BACOVA_01227 0.38 -0.7
7,214 - BACOVA_01227 0.39 +0.9
7,224 + BACOVA_01227 0.39 +1.6
7,224 + BACOVA_01227 0.39 +0.3
7,247 - BACOVA_01227 0.41 +0.4
7,267 - BACOVA_01227 0.42 -0.9
7,293 - BACOVA_01227 0.44 +2.0
7,293 - BACOVA_01227 0.44 -0.3
7,298 - BACOVA_01227 0.44 +0.0
7,307 + BACOVA_01227 0.45 +0.4
7,307 + BACOVA_01227 0.45 -1.6
7,310 - BACOVA_01227 0.45 +1.0
7,324 + BACOVA_01227 0.46 -0.4
7,337 - BACOVA_01227 0.47 +2.2
7,350 - BACOVA_01227 0.48 -0.7
7,359 + BACOVA_01227 0.48 +1.1
7,360 - BACOVA_01227 0.48 -0.6
7,367 - BACOVA_01227 0.49 -0.3
7,374 - BACOVA_01227 0.49 +0.9
7,374 - BACOVA_01227 0.49 -0.2
7,381 - BACOVA_01227 0.50 +2.0
7,388 + BACOVA_01227 0.50 -0.6
7,396 + BACOVA_01227 0.51 +0.3
7,424 + BACOVA_01227 0.53 -1.9
7,426 + BACOVA_01227 0.53 -0.5
7,432 + BACOVA_01227 0.53 -2.2
7,436 + BACOVA_01227 0.53 -1.1
7,437 - BACOVA_01227 0.53 +1.6
7,445 - BACOVA_01227 0.54 +0.5
7,445 - BACOVA_01227 0.54 -1.4
7,474 - BACOVA_01227 0.56 +1.0
7,486 + BACOVA_01227 0.57 +0.3
7,499 + BACOVA_01227 0.58 +0.1
7,522 + BACOVA_01227 0.59 +1.3
7,572 + BACOVA_01227 0.62 -0.4

Or see this region's nucleotide sequence