Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01052 and BACOVA_01053 are separated by 148 nucleotides BACOVA_01053 and BACOVA_01054 are separated by 290 nucleotides BACOVA_01054 and BACOVA_01055 overlap by 4 nucleotides
BACOVA_01052: BACOVA_01052 - hypothetical protein, at 258,926 to 260,707
_01052
BACOVA_01053: BACOVA_01053 - hexapeptide transferase family protein, at 260,856 to 261,371
_01053
BACOVA_01054: BACOVA_01054 - hypothetical protein, at 261,662 to 262,873
_01054
BACOVA_01055: BACOVA_01055 - hypothetical protein, at 262,870 to 264,504
_01055
Position (kb) 261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 260.782 kb on + strand at 260.783 kb on - strand at 260.806 kb on - strand at 260.812 kb on + strand at 260.812 kb on + strand at 260.812 kb on + strand at 260.813 kb on - strand at 260.813 kb on - strand at 260.823 kb on + strand at 260.827 kb on + strand at 260.850 kb on + strand at 260.850 kb on + strand at 260.851 kb on - strand at 260.854 kb on - strand at 260.855 kb on + strand at 260.855 kb on + strand at 260.856 kb on - strand at 260.856 kb on - strand at 260.863 kb on + strand at 260.868 kb on - strand at 260.886 kb on - strand at 260.930 kb on + strand, within BACOVA_01053 at 260.930 kb on + strand, within BACOVA_01053 at 260.930 kb on + strand, within BACOVA_01053 at 260.931 kb on - strand, within BACOVA_01053 at 260.933 kb on + strand, within BACOVA_01053 at 260.935 kb on + strand, within BACOVA_01053 at 260.935 kb on + strand, within BACOVA_01053 at 260.936 kb on - strand, within BACOVA_01053 at 260.936 kb on - strand, within BACOVA_01053 at 260.944 kb on + strand, within BACOVA_01053 at 260.945 kb on - strand, within BACOVA_01053 at 260.945 kb on - strand, within BACOVA_01053 at 260.978 kb on + strand, within BACOVA_01053 at 260.987 kb on - strand, within BACOVA_01053 at 261.053 kb on + strand, within BACOVA_01053 at 261.054 kb on - strand, within BACOVA_01053 at 261.054 kb on - strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.058 kb on + strand, within BACOVA_01053 at 261.059 kb on - strand, within BACOVA_01053 at 261.094 kb on + strand, within BACOVA_01053 at 261.094 kb on + strand, within BACOVA_01053 at 261.094 kb on + strand, within BACOVA_01053 at 261.101 kb on - strand, within BACOVA_01053 at 261.101 kb on - strand, within BACOVA_01053 at 261.107 kb on + strand, within BACOVA_01053 at 261.108 kb on - strand, within BACOVA_01053 at 261.141 kb on + strand, within BACOVA_01053 at 261.184 kb on + strand, within BACOVA_01053 at 261.226 kb on + strand, within BACOVA_01053 at 261.226 kb on + strand, within BACOVA_01053 at 261.227 kb on - strand, within BACOVA_01053 at 261.227 kb on - strand, within BACOVA_01053 at 261.227 kb on - strand, within BACOVA_01053 at 261.292 kb on + strand, within BACOVA_01053 at 261.349 kb on - strand at 261.360 kb on + strand at 261.360 kb on + strand at 261.360 kb on + strand at 261.363 kb on - strand at 261.375 kb on + strand at 261.416 kb on - strand at 261.484 kb on + strand at 261.508 kb on + strand at 261.508 kb on + strand at 261.522 kb on + strand at 261.529 kb on - strand at 261.552 kb on - strand at 261.559 kb on - strand at 261.570 kb on - strand at 261.588 kb on - strand at 261.655 kb on - strand at 261.655 kb on - strand at 261.670 kb on + strand at 261.678 kb on + strand at 261.679 kb on - strand at 261.709 kb on - strand at 261.744 kb on + strand at 261.744 kb on + strand at 261.754 kb on - strand at 261.757 kb on + strand at 261.788 kb on + strand, within BACOVA_01054 at 261.788 kb on + strand, within BACOVA_01054 at 261.791 kb on + strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.792 kb on - strand, within BACOVA_01054 at 261.835 kb on - strand, within BACOVA_01054 at 261.838 kb on + strand, within BACOVA_01054 at 261.857 kb on - strand, within BACOVA_01054 at 261.888 kb on + strand, within BACOVA_01054 at 261.888 kb on + strand, within BACOVA_01054 at 261.889 kb on - strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.945 kb on - strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.958 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 262.034 kb on - strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.036 kb on - strand, within BACOVA_01054 at 262.085 kb on - strand, within BACOVA_01054 at 262.099 kb on + strand, within BACOVA_01054 at 262.105 kb on - strand, within BACOVA_01054 at 262.129 kb on + strand, within BACOVA_01054 at 262.134 kb on - strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.191 kb on - strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.226 kb on - strand, within BACOVA_01054 at 262.234 kb on + strand, within BACOVA_01054 at 262.235 kb on - strand, within BACOVA_01054 at 262.239 kb on - strand, within BACOVA_01054 at 262.276 kb on + strand, within BACOVA_01054 at 262.352 kb on + strand, within BACOVA_01054 at 262.388 kb on + strand, within BACOVA_01054 at 262.395 kb on + strand, within BACOVA_01054 at 262.398 kb on + strand, within BACOVA_01054 at 262.415 kb on + strand, within BACOVA_01054 at 262.450 kb on + strand, within BACOVA_01054 at 262.451 kb on - strand, within BACOVA_01054 at 262.452 kb on + strand, within BACOVA_01054 at 262.534 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.642 kb on - strand, within BACOVA_01054 at 262.657 kb on + strand, within BACOVA_01054 at 262.658 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.679 kb on - strand, within BACOVA_01054 at 262.703 kb on + strand, within BACOVA_01054 at 262.705 kb on + strand, within BACOVA_01054 at 262.706 kb on - strand, within BACOVA_01054 at 262.743 kb on - strand, within BACOVA_01054 at 262.779 kb on + strand at 262.779 kb on + strand at 262.779 kb on + strand at 262.780 kb on - strand at 262.806 kb on + strand at 262.818 kb on - strand at 262.819 kb on + strand at 262.820 kb on - strand at 262.820 kb on - strand at 262.822 kb on + strand at 262.823 kb on - strand at 262.823 kb on - strand at 262.838 kb on - strand at 262.848 kb on + strand at 262.866 kb on + strand at 262.867 kb on - strand at 262.869 kb on + strand at 262.870 kb on - strand at 262.870 kb on - strand at 262.886 kb on + strand at 262.914 kb on - strand at 262.938 kb on - strand at 262.993 kb on + strand at 262.993 kb on + strand at 263.015 kb on + strand at 263.097 kb on + strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.100 kb on + strand, within BACOVA_01055 at 263.101 kb on - strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.192 kb on + strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.197 kb on - strand, within BACOVA_01055 at 263.204 kb on + strand, within BACOVA_01055 at 263.208 kb on + strand, within BACOVA_01055 at 263.209 kb on + strand, within BACOVA_01055 at 263.232 kb on - strand, within BACOVA_01055 at 263.246 kb on - strand, within BACOVA_01055 at 263.256 kb on + strand, within BACOVA_01055 at 263.295 kb on - strand, within BACOVA_01055 at 263.322 kb on - strand, within BACOVA_01055 at 263.330 kb on - strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.343 kb on + strand, within BACOVA_01055 at 263.370 kb on + strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.393 kb on + strand, within BACOVA_01055 at 263.394 kb on - strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.494 kb on + strand, within BACOVA_01055 at 263.495 kb on - strand, within BACOVA_01055 at 263.625 kb on - strand, within BACOVA_01055 at 263.639 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.645 kb on - strand, within BACOVA_01055 at 263.666 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.758 kb on + strand, within BACOVA_01055 at 263.759 kb on - strand, within BACOVA_01055 at 263.807 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.818 kb on - strand, within BACOVA_01055 at 263.828 kb on - strand, within BACOVA_01055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 260,782 + -0.7 260,783 - -2.8 260,806 - -2.3 260,812 + +0.7 260,812 + -0.0 260,812 + +0.3 260,813 - +0.0 260,813 - -0.7 260,823 + +0.3 260,827 + +1.0 260,850 + +3.5 260,850 + +0.0 260,851 - -2.6 260,854 - -2.9 260,855 + -0.3 260,855 + +0.1 260,856 - -1.4 260,856 - -0.3 260,863 + -0.7 260,868 - -2.3 260,886 - +0.5 260,930 + BACOVA_01053 0.14 -0.5 260,930 + BACOVA_01053 0.14 -1.2 260,930 + BACOVA_01053 0.14 +0.3 260,931 - BACOVA_01053 0.15 -1.4 260,933 + BACOVA_01053 0.15 -0.3 260,935 + BACOVA_01053 0.15 +0.1 260,935 + BACOVA_01053 0.15 +0.9 260,936 - BACOVA_01053 0.16 -0.7 260,936 - BACOVA_01053 0.16 -1.4 260,944 + BACOVA_01053 0.17 +0.2 260,945 - BACOVA_01053 0.17 -0.6 260,945 - BACOVA_01053 0.17 -2.9 260,978 + BACOVA_01053 0.24 +0.1 260,987 - BACOVA_01053 0.25 -0.2 261,053 + BACOVA_01053 0.38 +0.6 261,054 - BACOVA_01053 0.38 -0.7 261,054 - BACOVA_01053 0.38 -1.1 261,058 + BACOVA_01053 0.39 -1.7 261,058 + BACOVA_01053 0.39 -0.8 261,058 + BACOVA_01053 0.39 +0.1 261,058 + BACOVA_01053 0.39 -0.1 261,058 + BACOVA_01053 0.39 -0.8 261,059 - BACOVA_01053 0.39 -0.6 261,094 + BACOVA_01053 0.46 -0.6 261,094 + BACOVA_01053 0.46 -1.1 261,094 + BACOVA_01053 0.46 -1.5 261,101 - BACOVA_01053 0.47 +0.1 261,101 - BACOVA_01053 0.47 -2.8 261,107 + BACOVA_01053 0.49 -0.5 261,108 - BACOVA_01053 0.49 +0.4 261,141 + BACOVA_01053 0.55 +0.6 261,184 + BACOVA_01053 0.64 -0.0 261,226 + BACOVA_01053 0.72 +1.4 261,226 + BACOVA_01053 0.72 +2.3 261,227 - BACOVA_01053 0.72 +0.2 261,227 - BACOVA_01053 0.72 +0.6 261,227 - BACOVA_01053 0.72 -0.6 261,292 + BACOVA_01053 0.84 -1.4 261,349 - -0.3 261,360 + -2.0 261,360 + -0.6 261,360 + -0.1 261,363 - -0.9 261,375 + +0.1 261,416 - -1.3 261,484 + +0.4 261,508 + -0.5 261,508 + -0.7 261,522 + +0.5 261,529 - +0.5 261,552 - -0.3 261,559 - +0.3 261,570 - -1.5 261,588 - -0.9 261,655 - +0.4 261,655 - +0.1 261,670 + -1.3 261,678 + +1.7 261,679 - -1.1 261,709 - -0.9 261,744 + +1.2 261,744 + -1.8 261,754 - -0.1 261,757 + +0.0 261,788 + BACOVA_01054 0.10 -2.7 261,788 + BACOVA_01054 0.10 -0.3 261,791 + BACOVA_01054 0.11 -1.9 261,792 - BACOVA_01054 0.11 -2.0 261,792 - BACOVA_01054 0.11 +0.4 261,792 - BACOVA_01054 0.11 -1.4 261,792 - BACOVA_01054 0.11 +0.7 261,792 - BACOVA_01054 0.11 -1.0 261,835 - BACOVA_01054 0.14 -0.5 261,838 + BACOVA_01054 0.15 -0.6 261,857 - BACOVA_01054 0.16 -0.6 261,888 + BACOVA_01054 0.19 +0.2 261,888 + BACOVA_01054 0.19 -0.7 261,889 - BACOVA_01054 0.19 +1.4 261,899 + BACOVA_01054 0.20 +1.7 261,899 + BACOVA_01054 0.20 -2.3 261,900 - BACOVA_01054 0.20 -0.5 261,900 - BACOVA_01054 0.20 +0.0 261,900 - BACOVA_01054 0.20 -0.3 261,923 - BACOVA_01054 0.22 -1.0 261,923 - BACOVA_01054 0.22 -1.5 261,945 - BACOVA_01054 0.23 -0.3 261,957 + BACOVA_01054 0.24 -0.9 261,957 + BACOVA_01054 0.24 +0.7 261,957 + BACOVA_01054 0.24 -0.0 261,958 - BACOVA_01054 0.24 +0.7 261,991 - BACOVA_01054 0.27 -1.8 261,991 - BACOVA_01054 0.27 -1.1 262,034 - BACOVA_01054 0.31 +1.6 262,035 + BACOVA_01054 0.31 +2.4 262,035 + BACOVA_01054 0.31 -1.5 262,035 + BACOVA_01054 0.31 +1.5 262,035 + BACOVA_01054 0.31 -0.2 262,036 - BACOVA_01054 0.31 -0.7 262,085 - BACOVA_01054 0.35 -0.7 262,099 + BACOVA_01054 0.36 +0.4 262,105 - BACOVA_01054 0.37 -1.1 262,129 + BACOVA_01054 0.39 -1.1 262,134 - BACOVA_01054 0.39 -0.6 262,136 + BACOVA_01054 0.39 -0.7 262,136 + BACOVA_01054 0.39 +0.5 262,191 - BACOVA_01054 0.44 -0.7 262,225 + BACOVA_01054 0.46 -2.4 262,225 + BACOVA_01054 0.46 +0.6 262,225 + BACOVA_01054 0.46 +0.9 262,225 + BACOVA_01054 0.46 -0.3 262,226 - BACOVA_01054 0.47 -0.6 262,234 + BACOVA_01054 0.47 +0.2 262,235 - BACOVA_01054 0.47 -0.4 262,239 - BACOVA_01054 0.48 -1.1 262,276 + BACOVA_01054 0.51 -1.4 262,352 + BACOVA_01054 0.57 -1.8 262,388 + BACOVA_01054 0.60 -0.4 262,395 + BACOVA_01054 0.60 +0.1 262,398 + BACOVA_01054 0.61 +0.5 262,415 + BACOVA_01054 0.62 -0.7 262,450 + BACOVA_01054 0.65 -0.3 262,451 - BACOVA_01054 0.65 -0.1 262,452 + BACOVA_01054 0.65 -1.5 262,534 - BACOVA_01054 0.72 -0.9 262,537 - BACOVA_01054 0.72 +0.7 262,537 - BACOVA_01054 0.72 -0.4 262,642 - BACOVA_01054 0.81 -1.2 262,657 + BACOVA_01054 0.82 +0.6 262,658 - BACOVA_01054 0.82 -1.0 262,663 - BACOVA_01054 0.83 -1.8 262,663 - BACOVA_01054 0.83 +1.2 262,679 - BACOVA_01054 0.84 +0.6 262,703 + BACOVA_01054 0.86 -0.9 262,705 + BACOVA_01054 0.86 +0.0 262,706 - BACOVA_01054 0.86 +1.3 262,743 - BACOVA_01054 0.89 -0.6 262,779 + -2.5 262,779 + -1.4 262,779 + -1.0 262,780 - -0.8 262,806 + -1.4 262,818 - +0.9 262,819 + -1.2 262,820 - -0.4 262,820 - -1.1 262,822 + -0.9 262,823 - +1.7 262,823 - +0.5 262,838 - -2.2 262,848 + -0.6 262,866 + -3.5 262,867 - +1.1 262,869 + -1.5 262,870 - +0.3 262,870 - -1.0 262,886 + -0.6 262,914 - +0.6 262,938 - -1.3 262,993 + -1.6 262,993 + -1.9 263,015 + +0.3 263,097 + BACOVA_01055 0.14 +0.6 263,098 - BACOVA_01055 0.14 -2.0 263,098 - BACOVA_01055 0.14 -2.0 263,100 + BACOVA_01055 0.14 +1.9 263,101 - BACOVA_01055 0.14 +0.2 263,121 + BACOVA_01055 0.15 +1.0 263,121 + BACOVA_01055 0.15 -1.0 263,122 - BACOVA_01055 0.15 +0.0 263,122 - BACOVA_01055 0.15 -1.3 263,192 + BACOVA_01055 0.20 +0.5 263,193 - BACOVA_01055 0.20 -1.0 263,193 - BACOVA_01055 0.20 +0.0 263,197 - BACOVA_01055 0.20 +1.0 263,204 + BACOVA_01055 0.20 +1.3 263,208 + BACOVA_01055 0.21 -0.7 263,209 + BACOVA_01055 0.21 -3.3 263,232 - BACOVA_01055 0.22 -1.4 263,246 - BACOVA_01055 0.23 +0.4 263,256 + BACOVA_01055 0.24 -1.1 263,295 - BACOVA_01055 0.26 -0.2 263,322 - BACOVA_01055 0.28 -1.8 263,330 - BACOVA_01055 0.28 +0.0 263,336 + BACOVA_01055 0.29 +1.4 263,336 + BACOVA_01055 0.29 -1.4 263,337 - BACOVA_01055 0.29 +0.1 263,337 - BACOVA_01055 0.29 -1.0 263,337 - BACOVA_01055 0.29 -1.0 263,343 + BACOVA_01055 0.29 -0.4 263,370 + BACOVA_01055 0.31 -0.7 263,371 - BACOVA_01055 0.31 -0.7 263,371 - BACOVA_01055 0.31 -2.0 263,380 + BACOVA_01055 0.31 -1.4 263,380 + BACOVA_01055 0.31 -0.6 263,381 - BACOVA_01055 0.31 -0.7 263,381 - BACOVA_01055 0.31 -0.9 263,393 + BACOVA_01055 0.32 -0.9 263,394 - BACOVA_01055 0.32 -1.0 263,414 + BACOVA_01055 0.33 -1.1 263,414 + BACOVA_01055 0.33 -0.2 263,414 + BACOVA_01055 0.33 -0.2 263,414 + BACOVA_01055 0.33 -0.4 263,494 + BACOVA_01055 0.38 +2.9 263,495 - BACOVA_01055 0.38 +1.6 263,625 - BACOVA_01055 0.46 -0.6 263,639 - BACOVA_01055 0.47 -0.9 263,641 - BACOVA_01055 0.47 +1.0 263,641 - BACOVA_01055 0.47 -0.2 263,645 - BACOVA_01055 0.47 -0.4 263,666 + BACOVA_01055 0.49 -0.3 263,668 + BACOVA_01055 0.49 +0.1 263,668 + BACOVA_01055 0.49 +1.9 263,748 + BACOVA_01055 0.54 +4.8 263,748 + BACOVA_01055 0.54 -0.7 263,749 - BACOVA_01055 0.54 -1.1 263,749 - BACOVA_01055 0.54 -0.3 263,758 + BACOVA_01055 0.54 +1.7 263,759 - BACOVA_01055 0.54 +0.6 263,807 + BACOVA_01055 0.57 -0.4 263,817 + BACOVA_01055 0.58 -0.3 263,817 + BACOVA_01055 0.58 -1.3 263,817 + BACOVA_01055 0.58 +1.3 263,818 - BACOVA_01055 0.58 +0.6 263,828 - BACOVA_01055 0.59 -1.9
Or see this region's nucleotide sequence