Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00901 and BACOVA_00903 overlap by 7 nucleotides BACOVA_00903 and BACOVA_00904 are separated by 558 nucleotides BACOVA_00904 and BACOVA_00905 are separated by 115 nucleotides
BACOVA_00901: BACOVA_00901 - Alpha-L-rhamnosidase N-terminal domain protein, at 31,862 to 34,519
_00901
BACOVA_00903: BACOVA_00903 - glycosyl hydrolase family 2, sugar binding domain protein, at 34,513 to 34,719
_00903
BACOVA_00904: BACOVA_00904 - DEAD/DEAH box helicase, at 35,278 to 37,212
_00904
BACOVA_00905: BACOVA_00905 - tyrosine phosphatase family, at 37,328 to 38,317
_00905
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.369 kb on + strand at 34.381 kb on + strand at 34.382 kb on - strand at 34.382 kb on - strand at 34.382 kb on - strand at 34.396 kb on - strand at 34.412 kb on - strand at 34.427 kb on + strand at 34.483 kb on + strand at 34.484 kb on - strand at 34.484 kb on - strand at 34.495 kb on - strand at 34.553 kb on - strand, within BACOVA_00903 at 34.576 kb on + strand, within BACOVA_00903 at 34.576 kb on + strand, within BACOVA_00903 at 34.577 kb on - strand, within BACOVA_00903 at 34.577 kb on - strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.600 kb on - strand, within BACOVA_00903 at 34.648 kb on - strand, within BACOVA_00903 at 34.648 kb on - strand, within BACOVA_00903 at 34.648 kb on - strand, within BACOVA_00903 at 34.679 kb on + strand, within BACOVA_00903 at 34.680 kb on - strand, within BACOVA_00903 at 34.729 kb on - strand at 34.746 kb on - strand at 34.755 kb on + strand at 34.755 kb on + strand at 34.756 kb on - strand at 34.756 kb on - strand at 34.792 kb on - strand at 34.802 kb on + strand at 34.809 kb on - strand at 34.811 kb on + strand at 34.812 kb on - strand at 34.830 kb on + strand at 34.831 kb on - strand at 34.854 kb on - strand at 34.860 kb on + strand at 34.885 kb on + strand at 34.886 kb on - strand at 34.899 kb on + strand at 34.906 kb on - strand at 34.911 kb on + strand at 34.911 kb on + strand at 34.911 kb on + strand at 34.915 kb on - strand at 34.915 kb on - strand at 34.916 kb on + strand at 34.982 kb on - strand at 34.982 kb on - strand at 35.047 kb on - strand at 35.050 kb on + strand at 35.069 kb on - strand at 35.072 kb on - strand at 35.075 kb on + strand at 35.076 kb on - strand at 35.076 kb on - strand at 35.081 kb on + strand at 35.085 kb on - strand at 35.113 kb on + strand at 35.128 kb on - strand at 35.164 kb on + strand at 35.176 kb on - strand at 35.194 kb on + strand at 35.211 kb on - strand at 35.243 kb on - strand at 35.263 kb on - strand at 35.276 kb on - strand at 35.334 kb on + strand at 35.335 kb on - strand at 35.410 kb on - strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.467 kb on - strand at 35.472 kb on + strand, within BACOVA_00904 at 35.472 kb on + strand, within BACOVA_00904 at 35.638 kb on + strand, within BACOVA_00904 at 35.639 kb on - strand, within BACOVA_00904 at 35.679 kb on - strand, within BACOVA_00904 at 35.679 kb on - strand, within BACOVA_00904 at 35.689 kb on + strand, within BACOVA_00904 at 35.890 kb on + strand, within BACOVA_00904 at 35.890 kb on + strand, within BACOVA_00904 at 35.916 kb on - strand, within BACOVA_00904 at 35.918 kb on + strand, within BACOVA_00904 at 36.010 kb on - strand, within BACOVA_00904 at 36.066 kb on + strand, within BACOVA_00904 at 36.144 kb on + strand, within BACOVA_00904 at 36.188 kb on + strand, within BACOVA_00904 at 36.235 kb on - strand, within BACOVA_00904 at 36.236 kb on + strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.270 kb on + strand, within BACOVA_00904 at 36.270 kb on + strand, within BACOVA_00904 at 36.271 kb on - strand, within BACOVA_00904 at 36.271 kb on - strand, within BACOVA_00904 at 36.289 kb on + strand, within BACOVA_00904 at 36.360 kb on + strand, within BACOVA_00904 at 36.427 kb on + strand, within BACOVA_00904 at 36.463 kb on - strand, within BACOVA_00904 at 36.477 kb on + strand, within BACOVA_00904 at 36.482 kb on + strand, within BACOVA_00904 at 36.507 kb on + strand, within BACOVA_00904 at 36.508 kb on - strand, within BACOVA_00904 at 36.548 kb on + strand, within BACOVA_00904 at 36.692 kb on - strand, within BACOVA_00904 at 36.777 kb on + strand, within BACOVA_00904 at 36.778 kb on - strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.782 kb on - strand, within BACOVA_00904 at 36.788 kb on - strand, within BACOVA_00904 at 36.828 kb on + strand, within BACOVA_00904 at 36.833 kb on - strand, within BACOVA_00904 at 36.833 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.896 kb on - strand, within BACOVA_00904 at 36.899 kb on - strand, within BACOVA_00904 at 36.902 kb on - strand, within BACOVA_00904 at 36.904 kb on + strand, within BACOVA_00904 at 36.911 kb on - strand, within BACOVA_00904 at 36.923 kb on + strand, within BACOVA_00904 at 36.952 kb on + strand, within BACOVA_00904 at 37.085 kb on - strand at 37.085 kb on - strand at 37.085 kb on - strand at 37.085 kb on - strand at 37.103 kb on - strand at 37.174 kb on + strand at 37.214 kb on - strand at 37.224 kb on - strand at 37.279 kb on + strand at 37.283 kb on - strand at 37.307 kb on + strand at 37.319 kb on + strand at 37.319 kb on + strand at 37.329 kb on + strand at 37.330 kb on - strand at 37.330 kb on - strand at 37.344 kb on - strand at 37.401 kb on + strand at 37.402 kb on - strand at 37.410 kb on - strand at 37.419 kb on + strand at 37.474 kb on - strand, within BACOVA_00905 at 37.483 kb on + strand, within BACOVA_00905 at 37.484 kb on - strand, within BACOVA_00905 at 37.513 kb on + strand, within BACOVA_00905 at 37.513 kb on + strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.515 kb on + strand, within BACOVA_00905 at 37.515 kb on + strand, within BACOVA_00905 at 37.516 kb on - strand, within BACOVA_00905 at 37.521 kb on + strand, within BACOVA_00905 at 37.522 kb on - strand, within BACOVA_00905 at 37.540 kb on + strand, within BACOVA_00905 at 37.543 kb on + strand, within BACOVA_00905 at 37.543 kb on + strand, within BACOVA_00905 at 37.544 kb on - strand, within BACOVA_00905 at 37.555 kb on + strand, within BACOVA_00905 at 37.566 kb on + strand, within BACOVA_00905 at 37.576 kb on + strand, within BACOVA_00905 at 37.614 kb on - strand, within BACOVA_00905 at 37.651 kb on + strand, within BACOVA_00905 at 37.651 kb on + strand, within BACOVA_00905 at 37.652 kb on - strand, within BACOVA_00905 at 37.722 kb on + strand, within BACOVA_00905 at 37.723 kb on - strand, within BACOVA_00905 at 37.728 kb on - strand, within BACOVA_00905 at 37.734 kb on - strand, within BACOVA_00905 at 37.754 kb on + strand, within BACOVA_00905 at 37.754 kb on + strand, within BACOVA_00905 at 37.764 kb on + strand, within BACOVA_00905 at 37.769 kb on - strand, within BACOVA_00905 at 37.781 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.878 kb on + strand, within BACOVA_00905 at 37.904 kb on + strand, within BACOVA_00905 at 37.904 kb on + strand, within BACOVA_00905 at 37.905 kb on - strand, within BACOVA_00905 at 37.905 kb on - strand, within BACOVA_00905 at 37.910 kb on + strand, within BACOVA_00905 at 37.910 kb on + strand, within BACOVA_00905 at 37.911 kb on - strand, within BACOVA_00905 at 37.936 kb on + strand, within BACOVA_00905 at 37.937 kb on - strand, within BACOVA_00905 at 37.986 kb on + strand, within BACOVA_00905 at 37.986 kb on + strand, within BACOVA_00905 at 37.989 kb on - strand, within BACOVA_00905 at 38.032 kb on - strand, within BACOVA_00905 at 38.071 kb on + strand, within BACOVA_00905 at 38.072 kb on - strand, within BACOVA_00905 at 38.072 kb on - strand, within BACOVA_00905 at 38.108 kb on - strand, within BACOVA_00905 at 38.110 kb on + strand, within BACOVA_00905 at 38.114 kb on + strand, within BACOVA_00905 at 38.124 kb on + strand, within BACOVA_00905 at 38.124 kb on + strand, within BACOVA_00905 at 38.125 kb on - strand, within BACOVA_00905 at 38.128 kb on - strand, within BACOVA_00905 at 38.131 kb on - strand, within BACOVA_00905 at 38.154 kb on - strand, within BACOVA_00905 at 38.167 kb on + strand, within BACOVA_00905 at 38.168 kb on - strand, within BACOVA_00905 at 38.212 kb on + strand, within BACOVA_00905
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 34,369 + -1.1 34,381 + -0.9 34,382 - +1.1 34,382 - -0.5 34,382 - +0.0 34,396 - -0.3 34,412 - +0.6 34,427 + -0.9 34,483 + -1.3 34,484 - +0.9 34,484 - +0.9 34,495 - +0.5 34,553 - BACOVA_00903 0.19 +1.4 34,576 + BACOVA_00903 0.30 -2.3 34,576 + BACOVA_00903 0.30 +0.7 34,577 - BACOVA_00903 0.31 -2.5 34,577 - BACOVA_00903 0.31 -1.8 34,597 + BACOVA_00903 0.41 -0.6 34,597 + BACOVA_00903 0.41 -0.6 34,597 + BACOVA_00903 0.41 +0.3 34,597 + BACOVA_00903 0.41 -2.3 34,598 - BACOVA_00903 0.41 -1.7 34,598 - BACOVA_00903 0.41 -0.6 34,598 - BACOVA_00903 0.41 -0.0 34,598 - BACOVA_00903 0.41 -0.3 34,598 - BACOVA_00903 0.41 -0.4 34,599 + BACOVA_00903 0.42 -1.9 34,599 + BACOVA_00903 0.42 -0.5 34,599 + BACOVA_00903 0.42 +0.4 34,599 + BACOVA_00903 0.42 -0.3 34,600 - BACOVA_00903 0.42 +0.4 34,648 - BACOVA_00903 0.65 -1.5 34,648 - BACOVA_00903 0.65 -0.3 34,648 - BACOVA_00903 0.65 -0.3 34,679 + BACOVA_00903 0.80 -0.9 34,680 - BACOVA_00903 0.81 -0.2 34,729 - -1.1 34,746 - +0.2 34,755 + -1.7 34,755 + -0.5 34,756 - -1.8 34,756 - -1.2 34,792 - +0.7 34,802 + -0.6 34,809 - -1.0 34,811 + -0.3 34,812 - -0.5 34,830 + +1.9 34,831 - -1.2 34,854 - -1.1 34,860 + +0.6 34,885 + +0.6 34,886 - +1.4 34,899 + -1.0 34,906 - +0.1 34,911 + +1.4 34,911 + -1.2 34,911 + -0.9 34,915 - +0.8 34,915 - -0.1 34,916 + -1.3 34,982 - -1.2 34,982 - -1.4 35,047 - -0.2 35,050 + -0.8 35,069 - -0.4 35,072 - +0.0 35,075 + -0.4 35,076 - -0.5 35,076 - -0.1 35,081 + +2.5 35,085 - +0.4 35,113 + +0.3 35,128 - -2.1 35,164 + +1.1 35,176 - +0.6 35,194 + -2.2 35,211 - -1.3 35,243 - -0.4 35,263 - -0.2 35,276 - +1.1 35,334 + +0.6 35,335 - +1.4 35,410 - +2.4 35,415 + -1.7 35,415 + +1.6 35,467 - +0.3 35,472 + BACOVA_00904 0.10 +1.1 35,472 + BACOVA_00904 0.10 +1.5 35,638 + BACOVA_00904 0.19 -0.0 35,639 - BACOVA_00904 0.19 -0.2 35,679 - BACOVA_00904 0.21 -0.4 35,679 - BACOVA_00904 0.21 -1.0 35,689 + BACOVA_00904 0.21 -0.6 35,890 + BACOVA_00904 0.32 -0.6 35,890 + BACOVA_00904 0.32 -0.7 35,916 - BACOVA_00904 0.33 -1.7 35,918 + BACOVA_00904 0.33 -1.5 36,010 - BACOVA_00904 0.38 -0.5 36,066 + BACOVA_00904 0.41 +0.0 36,144 + BACOVA_00904 0.45 +0.7 36,188 + BACOVA_00904 0.47 +1.5 36,235 - BACOVA_00904 0.49 -2.5 36,236 + BACOVA_00904 0.50 -2.2 36,237 - BACOVA_00904 0.50 +0.3 36,237 - BACOVA_00904 0.50 -0.2 36,237 - BACOVA_00904 0.50 -0.4 36,237 - BACOVA_00904 0.50 -1.0 36,237 - BACOVA_00904 0.50 -0.6 36,270 + BACOVA_00904 0.51 +2.1 36,270 + BACOVA_00904 0.51 -0.4 36,271 - BACOVA_00904 0.51 -0.4 36,271 - BACOVA_00904 0.51 -1.5 36,289 + BACOVA_00904 0.52 +1.4 36,360 + BACOVA_00904 0.56 +0.6 36,427 + BACOVA_00904 0.59 +0.4 36,463 - BACOVA_00904 0.61 -2.1 36,477 + BACOVA_00904 0.62 -0.2 36,482 + BACOVA_00904 0.62 -0.8 36,507 + BACOVA_00904 0.64 +0.1 36,508 - BACOVA_00904 0.64 +0.6 36,548 + BACOVA_00904 0.66 -0.4 36,692 - BACOVA_00904 0.73 -0.9 36,777 + BACOVA_00904 0.77 -0.6 36,778 - BACOVA_00904 0.78 +1.1 36,781 + BACOVA_00904 0.78 +0.4 36,781 + BACOVA_00904 0.78 -0.7 36,781 + BACOVA_00904 0.78 -0.5 36,782 - BACOVA_00904 0.78 -0.1 36,788 - BACOVA_00904 0.78 -0.6 36,828 + BACOVA_00904 0.80 -0.4 36,833 - BACOVA_00904 0.80 -0.7 36,833 - BACOVA_00904 0.80 -0.4 36,866 - BACOVA_00904 0.82 +1.3 36,866 - BACOVA_00904 0.82 -1.7 36,866 - BACOVA_00904 0.82 +0.9 36,866 - BACOVA_00904 0.82 +0.2 36,893 + BACOVA_00904 0.83 -1.9 36,893 + BACOVA_00904 0.83 -1.0 36,893 + BACOVA_00904 0.83 +0.6 36,893 + BACOVA_00904 0.83 +0.0 36,895 + BACOVA_00904 0.84 +0.9 36,895 + BACOVA_00904 0.84 -0.9 36,895 + BACOVA_00904 0.84 +0.3 36,896 - BACOVA_00904 0.84 -0.8 36,899 - BACOVA_00904 0.84 +0.4 36,902 - BACOVA_00904 0.84 +1.7 36,904 + BACOVA_00904 0.84 -0.9 36,911 - BACOVA_00904 0.84 +1.0 36,923 + BACOVA_00904 0.85 -0.9 36,952 + BACOVA_00904 0.87 -0.9 37,085 - +2.1 37,085 - -1.0 37,085 - +1.7 37,085 - -0.6 37,103 - -1.8 37,174 + -0.8 37,214 - -0.1 37,224 - +0.0 37,279 + -0.3 37,283 - -0.9 37,307 + +0.9 37,319 + -0.6 37,319 + -1.5 37,329 + -1.0 37,330 - -1.3 37,330 - +1.3 37,344 - -2.1 37,401 + -1.5 37,402 - -0.0 37,410 - -1.5 37,419 + -1.6 37,474 - BACOVA_00905 0.15 -0.5 37,483 + BACOVA_00905 0.16 -0.6 37,484 - BACOVA_00905 0.16 +0.0 37,513 + BACOVA_00905 0.19 -0.5 37,513 + BACOVA_00905 0.19 +0.8 37,514 - BACOVA_00905 0.19 +0.3 37,514 - BACOVA_00905 0.19 +0.6 37,514 - BACOVA_00905 0.19 +1.7 37,515 + BACOVA_00905 0.19 +0.2 37,515 + BACOVA_00905 0.19 +0.7 37,516 - BACOVA_00905 0.19 -1.6 37,521 + BACOVA_00905 0.19 +1.0 37,522 - BACOVA_00905 0.20 -0.4 37,540 + BACOVA_00905 0.21 -0.2 37,543 + BACOVA_00905 0.22 -0.9 37,543 + BACOVA_00905 0.22 -0.9 37,544 - BACOVA_00905 0.22 +0.0 37,555 + BACOVA_00905 0.23 -0.4 37,566 + BACOVA_00905 0.24 -0.3 37,576 + BACOVA_00905 0.25 +1.1 37,614 - BACOVA_00905 0.29 -0.3 37,651 + BACOVA_00905 0.33 +0.1 37,651 + BACOVA_00905 0.33 +0.6 37,652 - BACOVA_00905 0.33 -0.7 37,722 + BACOVA_00905 0.40 -0.4 37,723 - BACOVA_00905 0.40 -0.5 37,728 - BACOVA_00905 0.40 +0.7 37,734 - BACOVA_00905 0.41 -1.4 37,754 + BACOVA_00905 0.43 +0.2 37,754 + BACOVA_00905 0.43 -0.5 37,764 + BACOVA_00905 0.44 +0.4 37,769 - BACOVA_00905 0.45 -0.3 37,781 + BACOVA_00905 0.46 -0.5 37,840 + BACOVA_00905 0.52 -0.6 37,840 + BACOVA_00905 0.52 -2.4 37,840 + BACOVA_00905 0.52 +0.1 37,844 + BACOVA_00905 0.52 -1.8 37,844 + BACOVA_00905 0.52 +0.9 37,844 + BACOVA_00905 0.52 +0.5 37,844 + BACOVA_00905 0.52 -0.8 37,844 + BACOVA_00905 0.52 +0.4 37,845 - BACOVA_00905 0.52 -0.2 37,845 - BACOVA_00905 0.52 -1.8 37,845 - BACOVA_00905 0.52 -0.8 37,845 - BACOVA_00905 0.52 +1.6 37,878 + BACOVA_00905 0.56 -1.0 37,904 + BACOVA_00905 0.58 -0.5 37,904 + BACOVA_00905 0.58 +1.6 37,905 - BACOVA_00905 0.58 +0.6 37,905 - BACOVA_00905 0.58 -0.8 37,910 + BACOVA_00905 0.59 +0.1 37,910 + BACOVA_00905 0.59 +0.9 37,911 - BACOVA_00905 0.59 -1.6 37,936 + BACOVA_00905 0.61 +1.4 37,937 - BACOVA_00905 0.62 +0.8 37,986 + BACOVA_00905 0.66 +0.9 37,986 + BACOVA_00905 0.66 -0.2 37,989 - BACOVA_00905 0.67 -0.9 38,032 - BACOVA_00905 0.71 -0.6 38,071 + BACOVA_00905 0.75 -0.2 38,072 - BACOVA_00905 0.75 +1.6 38,072 - BACOVA_00905 0.75 -1.5 38,108 - BACOVA_00905 0.79 +0.4 38,110 + BACOVA_00905 0.79 +1.0 38,114 + BACOVA_00905 0.79 +0.1 38,124 + BACOVA_00905 0.80 -1.8 38,124 + BACOVA_00905 0.80 +0.3 38,125 - BACOVA_00905 0.81 -0.9 38,128 - BACOVA_00905 0.81 -0.4 38,131 - BACOVA_00905 0.81 -1.5 38,154 - BACOVA_00905 0.83 -0.9 38,167 + BACOVA_00905 0.85 -0.7 38,168 - BACOVA_00905 0.85 -1.4 38,212 + BACOVA_00905 0.89 +0.7
Or see this region's nucleotide sequence