Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00829 and BACOVA_00830 are separated by 12 nucleotides BACOVA_00830 and BACOVA_00831 are separated by 39 nucleotides BACOVA_00831 and BACOVA_00832 are separated by 162 nucleotides
BACOVA_00829: BACOVA_00829 - hypothetical protein, at 79,832 to 81,055
_00829
BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549
_00830
BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188
_00831
BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842
_00832
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 80.123 kb on + strand, within BACOVA_00829 at 80.128 kb on + strand, within BACOVA_00829 at 80.186 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.329 kb on + strand, within BACOVA_00829 at 80.382 kb on - strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.410 kb on + strand, within BACOVA_00829 at 80.451 kb on + strand, within BACOVA_00829 at 80.512 kb on + strand, within BACOVA_00829 at 80.609 kb on - strand, within BACOVA_00829 at 80.620 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.832 kb on - strand, within BACOVA_00829 at 80.854 kb on - strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.878 kb on - strand, within BACOVA_00829 at 80.922 kb on + strand, within BACOVA_00829 at 80.923 kb on - strand, within BACOVA_00829 at 80.931 kb on - strand, within BACOVA_00829 at 80.973 kb on - strand at 80.973 kb on - strand at 81.006 kb on - strand at 81.055 kb on + strand at 81.056 kb on - strand at 81.056 kb on - strand at 81.057 kb on + strand at 81.057 kb on + strand at 81.058 kb on - strand at 81.058 kb on - strand at 81.059 kb on + strand at 81.179 kb on - strand at 81.180 kb on + strand at 81.181 kb on - strand at 81.181 kb on - strand at 81.232 kb on + strand, within BACOVA_00830 at 81.233 kb on - strand, within BACOVA_00830 at 81.252 kb on - strand, within BACOVA_00830 at 81.445 kb on + strand, within BACOVA_00830 at 81.455 kb on - strand, within BACOVA_00830 at 81.519 kb on + strand, within BACOVA_00830 at 81.527 kb on - strand, within BACOVA_00830 at 81.529 kb on + strand, within BACOVA_00830 at 81.530 kb on - strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.584 kb on - strand, within BACOVA_00830 at 81.637 kb on + strand, within BACOVA_00830 at 81.640 kb on - strand, within BACOVA_00830 at 81.749 kb on - strand, within BACOVA_00830 at 81.754 kb on + strand, within BACOVA_00830 at 81.755 kb on - strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.757 kb on - strand, within BACOVA_00830 at 81.762 kb on + strand, within BACOVA_00830 at 81.763 kb on - strand, within BACOVA_00830 at 81.780 kb on + strand, within BACOVA_00830 at 81.781 kb on - strand, within BACOVA_00830 at 81.783 kb on + strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.800 kb on + strand, within BACOVA_00830 at 81.806 kb on - strand, within BACOVA_00830 at 81.834 kb on + strand, within BACOVA_00830 at 81.838 kb on + strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.907 kb on + strand, within BACOVA_00830 at 81.913 kb on + strand, within BACOVA_00830 at 81.948 kb on - strand, within BACOVA_00830 at 81.967 kb on + strand, within BACOVA_00830 at 81.968 kb on - strand, within BACOVA_00830 at 82.036 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.054 kb on + strand, within BACOVA_00830 at 82.055 kb on - strand, within BACOVA_00830 at 82.056 kb on + strand, within BACOVA_00830 at 82.056 kb on + strand, within BACOVA_00830 at 82.056 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.109 kb on - strand, within BACOVA_00830 at 82.180 kb on + strand, within BACOVA_00830 at 82.184 kb on - strand, within BACOVA_00830 at 82.240 kb on - strand, within BACOVA_00830 at 82.240 kb on - strand, within BACOVA_00830 at 82.250 kb on + strand, within BACOVA_00830 at 82.287 kb on - strand, within BACOVA_00830 at 82.294 kb on + strand, within BACOVA_00830 at 82.294 kb on + strand, within BACOVA_00830 at 82.294 kb on + strand, within BACOVA_00830 at 82.351 kb on - strand, within BACOVA_00830 at 82.373 kb on - strand, within BACOVA_00830 at 82.488 kb on - strand at 82.488 kb on - strand at 82.552 kb on + strand at 82.552 kb on + strand at 82.552 kb on + strand at 82.553 kb on - strand at 82.553 kb on - strand at 82.571 kb on + strand at 82.572 kb on - strand at 82.574 kb on + strand at 82.575 kb on - strand at 82.594 kb on + strand at 82.739 kb on + strand, within BACOVA_00831 at 82.753 kb on + strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.755 kb on + strand, within BACOVA_00831 at 82.787 kb on - strand, within BACOVA_00831 at 82.798 kb on + strand, within BACOVA_00831 at 82.822 kb on + strand, within BACOVA_00831 at 82.823 kb on - strand, within BACOVA_00831 at 82.877 kb on - strand, within BACOVA_00831 at 82.900 kb on + strand, within BACOVA_00831 at 82.915 kb on + strand, within BACOVA_00831 at 82.990 kb on + strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.011 kb on - strand, within BACOVA_00831 at 83.062 kb on - strand, within BACOVA_00831 at 83.065 kb on + strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.080 kb on + strand, within BACOVA_00831 at 83.081 kb on - strand, within BACOVA_00831 at 83.082 kb on + strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.086 kb on + strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.146 kb on + strand at 83.148 kb on + strand at 83.189 kb on - strand at 83.213 kb on + strand at 83.241 kb on + strand at 83.241 kb on + strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.246 kb on - strand at 83.276 kb on + strand at 83.281 kb on - strand at 83.344 kb on + strand at 83.352 kb on + strand at 83.389 kb on + strand at 83.416 kb on - strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.509 kb on + strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 80,123 + BACOVA_00829 0.24 -0.4 80,128 + BACOVA_00829 0.24 -0.4 80,186 + BACOVA_00829 0.29 -0.3 80,244 + BACOVA_00829 0.34 -0.2 80,244 + BACOVA_00829 0.34 +0.3 80,245 - BACOVA_00829 0.34 -1.8 80,245 - BACOVA_00829 0.34 -1.2 80,329 + BACOVA_00829 0.41 -2.8 80,382 - BACOVA_00829 0.45 +0.4 80,387 + BACOVA_00829 0.45 -1.1 80,387 + BACOVA_00829 0.45 +0.1 80,388 - BACOVA_00829 0.45 +1.2 80,388 - BACOVA_00829 0.45 +0.2 80,388 - BACOVA_00829 0.45 -0.6 80,410 + BACOVA_00829 0.47 +0.6 80,451 + BACOVA_00829 0.51 +0.1 80,512 + BACOVA_00829 0.56 +0.4 80,609 - BACOVA_00829 0.63 -0.2 80,620 + BACOVA_00829 0.64 +1.0 80,831 + BACOVA_00829 0.82 +1.2 80,831 + BACOVA_00829 0.82 -1.9 80,832 - BACOVA_00829 0.82 -0.8 80,854 - BACOVA_00829 0.83 -0.5 80,877 + BACOVA_00829 0.85 -0.7 80,877 + BACOVA_00829 0.85 +0.9 80,878 - BACOVA_00829 0.85 -0.5 80,922 + BACOVA_00829 0.89 -0.8 80,923 - BACOVA_00829 0.89 +1.0 80,931 - BACOVA_00829 0.90 -0.2 80,973 - -0.2 80,973 - +0.8 81,006 - -0.4 81,055 + -1.9 81,056 - +0.7 81,056 - -1.8 81,057 + +1.5 81,057 + +0.8 81,058 - -3.1 81,058 - -1.4 81,059 + +0.2 81,179 - -0.1 81,180 + -0.9 81,181 - -0.8 81,181 - +0.1 81,232 + BACOVA_00830 0.11 +0.9 81,233 - BACOVA_00830 0.11 +0.1 81,252 - BACOVA_00830 0.12 +0.1 81,445 + BACOVA_00830 0.25 +0.5 81,455 - BACOVA_00830 0.26 +0.0 81,519 + BACOVA_00830 0.30 +0.3 81,527 - BACOVA_00830 0.31 -0.5 81,529 + BACOVA_00830 0.31 +1.2 81,530 - BACOVA_00830 0.31 +0.7 81,533 + BACOVA_00830 0.31 -0.5 81,533 + BACOVA_00830 0.31 -0.5 81,584 - BACOVA_00830 0.35 -0.2 81,637 + BACOVA_00830 0.38 -1.5 81,640 - BACOVA_00830 0.39 -0.6 81,749 - BACOVA_00830 0.46 +0.2 81,754 + BACOVA_00830 0.46 +1.2 81,755 - BACOVA_00830 0.46 -1.0 81,756 + BACOVA_00830 0.46 -1.5 81,756 + BACOVA_00830 0.46 +0.5 81,756 + BACOVA_00830 0.46 +0.8 81,757 - BACOVA_00830 0.46 +2.7 81,762 + BACOVA_00830 0.47 +1.2 81,763 - BACOVA_00830 0.47 +0.1 81,780 + BACOVA_00830 0.48 +1.5 81,781 - BACOVA_00830 0.48 -0.7 81,783 + BACOVA_00830 0.48 +0.2 81,784 - BACOVA_00830 0.48 -0.2 81,784 - BACOVA_00830 0.48 -0.2 81,800 + BACOVA_00830 0.49 -2.0 81,806 - BACOVA_00830 0.50 -0.2 81,834 + BACOVA_00830 0.52 -0.6 81,838 + BACOVA_00830 0.52 +0.9 81,839 - BACOVA_00830 0.52 +0.7 81,839 - BACOVA_00830 0.52 -0.8 81,839 - BACOVA_00830 0.52 -1.6 81,881 + BACOVA_00830 0.55 +0.4 81,881 + BACOVA_00830 0.55 -2.5 81,907 + BACOVA_00830 0.57 -0.8 81,913 + BACOVA_00830 0.57 +0.9 81,948 - BACOVA_00830 0.59 -0.5 81,967 + BACOVA_00830 0.61 -0.2 81,968 - BACOVA_00830 0.61 -0.2 82,036 + BACOVA_00830 0.65 +0.2 82,048 + BACOVA_00830 0.66 +0.6 82,048 + BACOVA_00830 0.66 +1.5 82,048 + BACOVA_00830 0.66 -0.9 82,049 - BACOVA_00830 0.66 +1.2 82,049 - BACOVA_00830 0.66 +1.2 82,054 + BACOVA_00830 0.67 -0.2 82,055 - BACOVA_00830 0.67 +1.0 82,056 + BACOVA_00830 0.67 +0.4 82,056 + BACOVA_00830 0.67 -1.6 82,056 + BACOVA_00830 0.67 +0.2 82,108 + BACOVA_00830 0.70 -0.3 82,108 + BACOVA_00830 0.70 +1.2 82,108 + BACOVA_00830 0.70 -2.3 82,108 + BACOVA_00830 0.70 +0.2 82,109 - BACOVA_00830 0.70 +0.4 82,180 + BACOVA_00830 0.75 -0.0 82,184 - BACOVA_00830 0.75 +0.2 82,240 - BACOVA_00830 0.79 +2.0 82,240 - BACOVA_00830 0.79 -1.9 82,250 + BACOVA_00830 0.80 +1.0 82,287 - BACOVA_00830 0.82 +2.2 82,294 + BACOVA_00830 0.83 -2.1 82,294 + BACOVA_00830 0.83 -0.0 82,294 + BACOVA_00830 0.83 -1.4 82,351 - BACOVA_00830 0.87 -1.5 82,373 - BACOVA_00830 0.88 -1.1 82,488 - +0.8 82,488 - -0.8 82,552 + +0.4 82,552 + +1.5 82,552 + -0.6 82,553 - +1.5 82,553 - -0.6 82,571 + -1.2 82,572 - -0.8 82,574 + -2.2 82,575 - -0.4 82,594 + +0.6 82,739 + BACOVA_00831 0.25 +0.8 82,753 + BACOVA_00831 0.27 +0.9 82,754 - BACOVA_00831 0.28 +0.6 82,754 - BACOVA_00831 0.28 -0.3 82,754 - BACOVA_00831 0.28 +1.2 82,755 + BACOVA_00831 0.28 +0.8 82,787 - BACOVA_00831 0.33 +2.2 82,798 + BACOVA_00831 0.35 +2.8 82,822 + BACOVA_00831 0.39 +0.8 82,823 - BACOVA_00831 0.39 +0.4 82,877 - BACOVA_00831 0.48 -0.3 82,900 + BACOVA_00831 0.52 +0.1 82,915 + BACOVA_00831 0.54 -0.5 82,990 + BACOVA_00831 0.67 +0.1 83,008 - BACOVA_00831 0.70 +1.2 83,008 - BACOVA_00831 0.70 -0.8 83,008 - BACOVA_00831 0.70 -0.4 83,011 - BACOVA_00831 0.70 +0.8 83,062 - BACOVA_00831 0.79 +0.8 83,065 + BACOVA_00831 0.79 +0.8 83,066 - BACOVA_00831 0.80 +1.2 83,066 - BACOVA_00831 0.80 -0.3 83,066 - BACOVA_00831 0.80 +0.8 83,066 - BACOVA_00831 0.80 +0.9 83,080 + BACOVA_00831 0.82 -1.0 83,081 - BACOVA_00831 0.82 +2.2 83,082 + BACOVA_00831 0.82 -1.3 83,083 - BACOVA_00831 0.82 +0.1 83,083 - BACOVA_00831 0.82 +1.6 83,083 - BACOVA_00831 0.82 +1.0 83,083 - BACOVA_00831 0.82 +0.1 83,086 + BACOVA_00831 0.83 +1.1 83,087 - BACOVA_00831 0.83 +1.1 83,087 - BACOVA_00831 0.83 +1.6 83,087 - BACOVA_00831 0.83 -0.9 83,087 - BACOVA_00831 0.83 +0.7 83,146 + -0.4 83,148 + -1.7 83,189 - +0.2 83,213 + -2.2 83,241 + -0.1 83,241 + +0.0 83,242 - +1.4 83,242 - -0.4 83,242 - +1.6 83,246 - -0.2 83,276 + +0.0 83,281 - +1.1 83,344 + -0.5 83,352 + +3.2 83,389 + +0.8 83,416 - BACOVA_00832 0.13 -2.0 83,489 + BACOVA_00832 0.28 +0.8 83,489 + BACOVA_00832 0.28 +0.8 83,490 - BACOVA_00832 0.28 -0.2 83,490 - BACOVA_00832 0.28 +0.4 83,509 + BACOVA_00832 0.32 -1.4 83,510 - BACOVA_00832 0.32 +0.6 83,510 - BACOVA_00832 0.32 +1.3 83,510 - BACOVA_00832 0.32 +0.5 83,538 + BACOVA_00832 0.38 +2.5 83,538 + BACOVA_00832 0.38 -0.1 83,539 - BACOVA_00832 0.38 -0.3 83,539 - BACOVA_00832 0.38 -0.2
Or see this region's nucleotide sequence