Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00426 and BACOVA_00427 are separated by 77 nucleotides BACOVA_00427 and BACOVA_00428 are separated by 47 nucleotides BACOVA_00428 and BACOVA_00429 are separated by 6 nucleotides
BACOVA_00426: BACOVA_00426 - glycosyl hydrolase family 3 C-terminal domain protein, at 2,552 to 5,131
_00426
BACOVA_00427: BACOVA_00427 - glycosyl hydrolase family 3 N-terminal domain protein, at 5,209 to 5,511
_00427
BACOVA_00428: BACOVA_00428 - hypothetical protein, at 5,559 to 5,834
_00428
BACOVA_00429: BACOVA_00429 - hypothetical protein, at 5,841 to 6,836
_00429
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14 at 4.211 kb on - strand, within BACOVA_00426 at 4.318 kb on + strand, within BACOVA_00426 at 4.328 kb on - strand, within BACOVA_00426 at 4.361 kb on - strand, within BACOVA_00426 at 4.361 kb on - strand, within BACOVA_00426 at 4.402 kb on - strand, within BACOVA_00426 at 4.412 kb on + strand, within BACOVA_00426 at 4.421 kb on + strand, within BACOVA_00426 at 4.466 kb on - strand, within BACOVA_00426 at 4.480 kb on - strand, within BACOVA_00426 at 4.480 kb on - strand, within BACOVA_00426 at 4.513 kb on + strand, within BACOVA_00426 at 4.513 kb on + strand, within BACOVA_00426 at 4.513 kb on + strand, within BACOVA_00426 at 4.514 kb on - strand, within BACOVA_00426 at 4.596 kb on - strand, within BACOVA_00426 at 4.615 kb on + strand, within BACOVA_00426 at 4.648 kb on + strand, within BACOVA_00426 at 4.732 kb on - strand, within BACOVA_00426 at 4.732 kb on - strand, within BACOVA_00426 at 4.735 kb on + strand, within BACOVA_00426 at 4.817 kb on - strand, within BACOVA_00426 at 4.818 kb on + strand, within BACOVA_00426 at 4.818 kb on + strand, within BACOVA_00426 at 4.818 kb on + strand, within BACOVA_00426 at 4.826 kb on + strand, within BACOVA_00426 at 4.826 kb on + strand, within BACOVA_00426 at 4.827 kb on - strand, within BACOVA_00426 at 4.843 kb on + strand, within BACOVA_00426 at 4.893 kb on - strand at 5.024 kb on + strand at 5.050 kb on + strand at 5.051 kb on - strand at 5.051 kb on - strand at 5.080 kb on + strand at 5.080 kb on + strand at 5.081 kb on - strand at 5.085 kb on - strand at 5.085 kb on - strand at 5.087 kb on - strand at 5.108 kb on + strand at 5.108 kb on + strand at 5.118 kb on - strand at 5.119 kb on + strand at 5.120 kb on - strand at 5.120 kb on - strand at 5.121 kb on + strand at 5.121 kb on + strand at 5.122 kb on - strand at 5.182 kb on + strand at 5.210 kb on + strand at 5.262 kb on + strand, within BACOVA_00427 at 5.263 kb on - strand, within BACOVA_00427 at 5.263 kb on - strand, within BACOVA_00427 at 5.276 kb on + strand, within BACOVA_00427 at 5.290 kb on + strand, within BACOVA_00427 at 5.291 kb on - strand, within BACOVA_00427 at 5.321 kb on - strand, within BACOVA_00427 at 5.324 kb on + strand, within BACOVA_00427 at 5.325 kb on - strand, within BACOVA_00427 at 5.330 kb on - strand, within BACOVA_00427 at 5.332 kb on + strand, within BACOVA_00427 at 5.337 kb on + strand, within BACOVA_00427 at 5.402 kb on + strand, within BACOVA_00427 at 5.403 kb on - strand, within BACOVA_00427 at 5.406 kb on + strand, within BACOVA_00427 at 5.410 kb on - strand, within BACOVA_00427 at 5.437 kb on - strand, within BACOVA_00427 at 5.464 kb on - strand, within BACOVA_00427 at 5.474 kb on + strand, within BACOVA_00427 at 5.476 kb on + strand, within BACOVA_00427 at 5.476 kb on + strand, within BACOVA_00427 at 5.476 kb on + strand, within BACOVA_00427 at 5.476 kb on + strand, within BACOVA_00427 at 5.477 kb on - strand, within BACOVA_00427 at 5.478 kb on + strand, within BACOVA_00427 at 5.478 kb on + strand, within BACOVA_00427 at 5.478 kb on + strand, within BACOVA_00427 at 5.480 kb on + strand, within BACOVA_00427 at 5.480 kb on + strand, within BACOVA_00427 at 5.535 kb on + strand at 5.535 kb on + strand at 5.556 kb on + strand at 5.556 kb on + strand at 5.557 kb on - strand at 5.561 kb on - strand at 5.561 kb on - strand at 5.561 kb on - strand at 5.563 kb on - strand at 5.747 kb on + strand, within BACOVA_00428 at 5.748 kb on - strand, within BACOVA_00428 at 5.748 kb on - strand, within BACOVA_00428 at 5.790 kb on - strand, within BACOVA_00428 at 5.794 kb on - strand, within BACOVA_00428 at 5.794 kb on - strand, within BACOVA_00428 at 5.817 kb on + strand at 5.837 kb on + strand at 5.837 kb on + strand at 5.838 kb on - strand at 5.839 kb on + strand at 5.839 kb on + strand at 5.839 kb on + strand at 5.840 kb on - strand at 5.883 kb on - strand at 5.886 kb on - strand at 5.923 kb on + strand at 5.924 kb on - strand at 5.924 kb on - strand at 5.930 kb on + strand at 5.931 kb on - strand at 5.982 kb on - strand, within BACOVA_00429 at 6.015 kb on - strand, within BACOVA_00429 at 6.017 kb on + strand, within BACOVA_00429 at 6.017 kb on + strand, within BACOVA_00429 at 6.018 kb on - strand, within BACOVA_00429 at 6.037 kb on + strand, within BACOVA_00429 at 6.072 kb on + strand, within BACOVA_00429 at 6.072 kb on + strand, within BACOVA_00429 at 6.072 kb on + strand, within BACOVA_00429 at 6.073 kb on - strand, within BACOVA_00429 at 6.080 kb on - strand, within BACOVA_00429 at 6.080 kb on - strand, within BACOVA_00429 at 6.098 kb on + strand, within BACOVA_00429 at 6.105 kb on - strand, within BACOVA_00429 at 6.203 kb on + strand, within BACOVA_00429 at 6.204 kb on - strand, within BACOVA_00429 at 6.230 kb on + strand, within BACOVA_00429 at 6.230 kb on + strand, within BACOVA_00429 at 6.230 kb on + strand, within BACOVA_00429 at 6.231 kb on - strand, within BACOVA_00429 at 6.232 kb on + strand, within BACOVA_00429 at 6.232 kb on + strand, within BACOVA_00429 at 6.232 kb on + strand, within BACOVA_00429 at 6.233 kb on - strand, within BACOVA_00429 at 6.263 kb on - strand, within BACOVA_00429 at 6.263 kb on - strand, within BACOVA_00429 at 6.289 kb on - strand, within BACOVA_00429 at 6.305 kb on + strand, within BACOVA_00429 at 6.317 kb on - strand, within BACOVA_00429 at 6.345 kb on - strand, within BACOVA_00429 at 6.347 kb on + strand, within BACOVA_00429 at 6.350 kb on + strand, within BACOVA_00429 at 6.359 kb on + strand, within BACOVA_00429 at 6.359 kb on + strand, within BACOVA_00429 at 6.360 kb on - strand, within BACOVA_00429 at 6.360 kb on - strand, within BACOVA_00429 at 6.366 kb on - strand, within BACOVA_00429 at 6.370 kb on - strand, within BACOVA_00429 at 6.374 kb on + strand, within BACOVA_00429 at 6.448 kb on + strand, within BACOVA_00429 at 6.454 kb on + strand, within BACOVA_00429 at 6.455 kb on - strand, within BACOVA_00429 at 6.457 kb on + strand, within BACOVA_00429 at 6.457 kb on + strand, within BACOVA_00429 at 6.458 kb on - strand, within BACOVA_00429 at 6.458 kb on - strand, within BACOVA_00429 at 6.458 kb on - strand, within BACOVA_00429 at 6.467 kb on + strand, within BACOVA_00429 at 6.479 kb on + strand, within BACOVA_00429 at 6.483 kb on + strand, within BACOVA_00429 at 6.483 kb on + strand, within BACOVA_00429 at 6.483 kb on + strand, within BACOVA_00429 at 6.484 kb on - strand, within BACOVA_00429 at 6.484 kb on - strand, within BACOVA_00429 at 6.484 kb on - strand, within BACOVA_00429 at 6.485 kb on + strand, within BACOVA_00429 at 6.485 kb on + strand, within BACOVA_00429 at 6.492 kb on + strand, within BACOVA_00429 at 6.492 kb on + strand, within BACOVA_00429 at 6.493 kb on - strand, within BACOVA_00429
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 4,211 - BACOVA_00426 0.64 +0.2 4,318 + BACOVA_00426 0.68 +2.3 4,328 - BACOVA_00426 0.69 +0.9 4,361 - BACOVA_00426 0.70 +0.6 4,361 - BACOVA_00426 0.70 +1.5 4,402 - BACOVA_00426 0.72 +14.4 4,412 + BACOVA_00426 0.72 -0.9 4,421 + BACOVA_00426 0.72 -0.5 4,466 - BACOVA_00426 0.74 +1.2 4,480 - BACOVA_00426 0.75 -0.5 4,480 - BACOVA_00426 0.75 -0.2 4,513 + BACOVA_00426 0.76 +2.1 4,513 + BACOVA_00426 0.76 -0.1 4,513 + BACOVA_00426 0.76 +0.1 4,514 - BACOVA_00426 0.76 -0.2 4,596 - BACOVA_00426 0.79 -1.1 4,615 + BACOVA_00426 0.80 +0.2 4,648 + BACOVA_00426 0.81 -0.2 4,732 - BACOVA_00426 0.84 +2.4 4,732 - BACOVA_00426 0.84 -0.7 4,735 + BACOVA_00426 0.85 -1.2 4,817 - BACOVA_00426 0.88 -0.8 4,818 + BACOVA_00426 0.88 +1.4 4,818 + BACOVA_00426 0.88 +0.5 4,818 + BACOVA_00426 0.88 -1.9 4,826 + BACOVA_00426 0.88 -1.2 4,826 + BACOVA_00426 0.88 -0.1 4,827 - BACOVA_00426 0.88 -2.0 4,843 + BACOVA_00426 0.89 -0.3 4,893 - -1.4 5,024 + -0.1 5,050 + +0.4 5,051 - -0.7 5,051 - -2.0 5,080 + +0.2 5,080 + +0.3 5,081 - +0.3 5,085 - +0.2 5,085 - +0.8 5,087 - -1.1 5,108 + -1.4 5,108 + +0.6 5,118 - -0.1 5,119 + +0.2 5,120 - +1.4 5,120 - +0.4 5,121 + -1.1 5,121 + -0.8 5,122 - +1.3 5,182 + -2.2 5,210 + -0.2 5,262 + BACOVA_00427 0.17 -0.7 5,263 - BACOVA_00427 0.18 -0.2 5,263 - BACOVA_00427 0.18 -1.0 5,276 + BACOVA_00427 0.22 -1.0 5,290 + BACOVA_00427 0.27 -0.6 5,291 - BACOVA_00427 0.27 -2.6 5,321 - BACOVA_00427 0.37 -0.8 5,324 + BACOVA_00427 0.38 -0.9 5,325 - BACOVA_00427 0.38 +0.5 5,330 - BACOVA_00427 0.40 +0.8 5,332 + BACOVA_00427 0.41 -0.7 5,337 + BACOVA_00427 0.42 +0.1 5,402 + BACOVA_00427 0.64 +1.2 5,403 - BACOVA_00427 0.64 +0.0 5,406 + BACOVA_00427 0.65 +0.1 5,410 - BACOVA_00427 0.66 +0.1 5,437 - BACOVA_00427 0.75 +0.3 5,464 - BACOVA_00427 0.84 -0.4 5,474 + BACOVA_00427 0.87 -0.3 5,476 + BACOVA_00427 0.88 +1.0 5,476 + BACOVA_00427 0.88 -3.1 5,476 + BACOVA_00427 0.88 +0.2 5,476 + BACOVA_00427 0.88 -0.6 5,477 - BACOVA_00427 0.88 -0.6 5,478 + BACOVA_00427 0.89 +0.2 5,478 + BACOVA_00427 0.89 +0.9 5,478 + BACOVA_00427 0.89 -0.4 5,480 + BACOVA_00427 0.89 +0.3 5,480 + BACOVA_00427 0.89 -1.0 5,535 + -0.1 5,535 + -0.1 5,556 + +0.2 5,556 + +2.7 5,557 - +0.6 5,561 - +0.3 5,561 - -0.1 5,561 - -2.1 5,563 - +1.0 5,747 + BACOVA_00428 0.68 +0.3 5,748 - BACOVA_00428 0.68 -1.5 5,748 - BACOVA_00428 0.68 -0.0 5,790 - BACOVA_00428 0.84 +0.9 5,794 - BACOVA_00428 0.85 -0.4 5,794 - BACOVA_00428 0.85 +1.5 5,817 + +0.0 5,837 + -0.7 5,837 + +0.4 5,838 - +0.2 5,839 + -0.3 5,839 + +1.7 5,839 + -0.2 5,840 - +0.1 5,883 - -0.8 5,886 - +1.2 5,923 + +0.2 5,924 - +0.7 5,924 - -0.5 5,930 + +0.2 5,931 - -0.4 5,982 - BACOVA_00429 0.14 +1.2 6,015 - BACOVA_00429 0.17 -1.2 6,017 + BACOVA_00429 0.18 -0.4 6,017 + BACOVA_00429 0.18 -0.4 6,018 - BACOVA_00429 0.18 -0.5 6,037 + BACOVA_00429 0.20 -0.7 6,072 + BACOVA_00429 0.23 -1.3 6,072 + BACOVA_00429 0.23 +0.6 6,072 + BACOVA_00429 0.23 -0.7 6,073 - BACOVA_00429 0.23 +2.5 6,080 - BACOVA_00429 0.24 -0.4 6,080 - BACOVA_00429 0.24 -0.8 6,098 + BACOVA_00429 0.26 +0.0 6,105 - BACOVA_00429 0.27 -0.7 6,203 + BACOVA_00429 0.36 -0.5 6,204 - BACOVA_00429 0.36 -0.4 6,230 + BACOVA_00429 0.39 +1.6 6,230 + BACOVA_00429 0.39 -2.6 6,230 + BACOVA_00429 0.39 -1.5 6,231 - BACOVA_00429 0.39 +0.8 6,232 + BACOVA_00429 0.39 +1.3 6,232 + BACOVA_00429 0.39 -1.4 6,232 + BACOVA_00429 0.39 +0.3 6,233 - BACOVA_00429 0.39 -1.5 6,263 - BACOVA_00429 0.42 +1.1 6,263 - BACOVA_00429 0.42 +3.1 6,289 - BACOVA_00429 0.45 -0.4 6,305 + BACOVA_00429 0.47 -0.2 6,317 - BACOVA_00429 0.48 -0.4 6,345 - BACOVA_00429 0.51 +1.3 6,347 + BACOVA_00429 0.51 +0.4 6,350 + BACOVA_00429 0.51 +5.5 6,359 + BACOVA_00429 0.52 +0.9 6,359 + BACOVA_00429 0.52 -1.1 6,360 - BACOVA_00429 0.52 +0.2 6,360 - BACOVA_00429 0.52 +0.3 6,366 - BACOVA_00429 0.53 -0.3 6,370 - BACOVA_00429 0.53 -0.5 6,374 + BACOVA_00429 0.54 -0.8 6,448 + BACOVA_00429 0.61 -2.3 6,454 + BACOVA_00429 0.62 +0.9 6,455 - BACOVA_00429 0.62 +0.3 6,457 + BACOVA_00429 0.62 -0.6 6,457 + BACOVA_00429 0.62 -0.6 6,458 - BACOVA_00429 0.62 -1.2 6,458 - BACOVA_00429 0.62 +1.9 6,458 - BACOVA_00429 0.62 -0.9 6,467 + BACOVA_00429 0.63 -0.8 6,479 + BACOVA_00429 0.64 -2.2 6,483 + BACOVA_00429 0.64 -1.7 6,483 + BACOVA_00429 0.64 -0.3 6,483 + BACOVA_00429 0.64 +0.4 6,484 - BACOVA_00429 0.65 +0.2 6,484 - BACOVA_00429 0.65 +1.2 6,484 - BACOVA_00429 0.65 -0.8 6,485 + BACOVA_00429 0.65 -1.4 6,485 + BACOVA_00429 0.65 -0.6 6,492 + BACOVA_00429 0.65 -1.1 6,492 + BACOVA_00429 0.65 -1.6 6,493 - BACOVA_00429 0.65 +0.3
Or see this region's nucleotide sequence