Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00255 and BACOVA_00256 are separated by 145 nucleotides BACOVA_00256 and BACOVA_00257 are separated by 16 nucleotides
BACOVA_00255: BACOVA_00255 - transposase, IS4 family, at 37,231 to 38,133
_00255
BACOVA_00256: BACOVA_00256 - hypothetical protein, at 38,279 to 40,264
_00256
BACOVA_00257: BACOVA_00257 - glycosyl hydrolase, family 43, at 40,281 to 41,657
_00257
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 37.294 kb on + strand at 37.294 kb on + strand at 37.295 kb on - strand at 37.295 kb on - strand at 37.295 kb on - strand at 37.297 kb on - strand at 37.297 kb on - strand at 37.363 kb on - strand, within BACOVA_00255 at 37.379 kb on + strand, within BACOVA_00255 at 37.380 kb on - strand, within BACOVA_00255 at 37.434 kb on + strand, within BACOVA_00255 at 37.435 kb on - strand, within BACOVA_00255 at 37.443 kb on + strand, within BACOVA_00255 at 37.443 kb on + strand, within BACOVA_00255 at 37.499 kb on + strand, within BACOVA_00255 at 37.500 kb on - strand, within BACOVA_00255 at 37.522 kb on - strand, within BACOVA_00255 at 37.523 kb on + strand, within BACOVA_00255 at 37.523 kb on + strand, within BACOVA_00255 at 37.524 kb on - strand, within BACOVA_00255 at 37.524 kb on - strand, within BACOVA_00255 at 37.542 kb on + strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.544 kb on + strand, within BACOVA_00255 at 37.613 kb on - strand, within BACOVA_00255 at 37.664 kb on + strand, within BACOVA_00255 at 37.664 kb on + strand, within BACOVA_00255 at 37.664 kb on + strand, within BACOVA_00255 at 37.665 kb on - strand, within BACOVA_00255 at 37.665 kb on - strand, within BACOVA_00255 at 37.666 kb on + strand, within BACOVA_00255 at 37.667 kb on - strand, within BACOVA_00255 at 37.667 kb on - strand, within BACOVA_00255 at 37.667 kb on - strand, within BACOVA_00255 at 37.672 kb on - strand, within BACOVA_00255 at 37.672 kb on - strand, within BACOVA_00255 at 37.672 kb on - strand, within BACOVA_00255 at 37.767 kb on + strand, within BACOVA_00255 at 37.833 kb on - strand, within BACOVA_00255 at 37.846 kb on - strand, within BACOVA_00255 at 37.850 kb on + strand, within BACOVA_00255 at 37.850 kb on + strand, within BACOVA_00255 at 37.857 kb on + strand, within BACOVA_00255 at 37.857 kb on + strand, within BACOVA_00255 at 38.033 kb on + strand, within BACOVA_00255 at 38.057 kb on - strand at 38.057 kb on - strand at 38.063 kb on + strand at 38.080 kb on - strand at 38.096 kb on - strand at 38.096 kb on - strand at 38.111 kb on + strand at 38.115 kb on + strand at 38.192 kb on + strand at 38.197 kb on - strand at 38.254 kb on - strand at 38.254 kb on - strand at 38.261 kb on + strand at 38.261 kb on + strand at 38.270 kb on + strand at 38.271 kb on - strand at 38.271 kb on - strand at 38.278 kb on - strand at 38.305 kb on - strand at 38.348 kb on - strand at 38.404 kb on + strand at 38.405 kb on - strand at 38.405 kb on - strand at 38.405 kb on - strand at 38.406 kb on + strand at 38.408 kb on + strand at 38.408 kb on + strand at 38.408 kb on + strand at 38.409 kb on - strand at 38.409 kb on - strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.411 kb on - strand at 38.415 kb on + strand at 38.416 kb on - strand at 38.418 kb on - strand at 38.465 kb on - strand at 38.527 kb on - strand, within BACOVA_00256 at 38.537 kb on + strand, within BACOVA_00256 at 38.603 kb on + strand, within BACOVA_00256 at 38.674 kb on + strand, within BACOVA_00256 at 38.706 kb on - strand, within BACOVA_00256 at 38.838 kb on - strand, within BACOVA_00256 at 38.852 kb on - strand, within BACOVA_00256 at 38.894 kb on + strand, within BACOVA_00256 at 38.970 kb on - strand, within BACOVA_00256 at 39.008 kb on + strand, within BACOVA_00256 at 39.192 kb on - strand, within BACOVA_00256 at 39.201 kb on - strand, within BACOVA_00256 at 39.201 kb on - strand, within BACOVA_00256 at 39.253 kb on + strand, within BACOVA_00256 at 39.275 kb on + strand, within BACOVA_00256 at 39.276 kb on - strand, within BACOVA_00256 at 39.277 kb on + strand, within BACOVA_00256 at 39.303 kb on - strand, within BACOVA_00256 at 39.393 kb on + strand, within BACOVA_00256 at 39.411 kb on - strand, within BACOVA_00256 at 39.460 kb on + strand, within BACOVA_00256 at 39.461 kb on - strand, within BACOVA_00256 at 39.598 kb on + strand, within BACOVA_00256 at 39.599 kb on - strand, within BACOVA_00256 at 39.628 kb on + strand, within BACOVA_00256 at 39.629 kb on - strand, within BACOVA_00256 at 39.666 kb on - strand, within BACOVA_00256 at 39.994 kb on - strand, within BACOVA_00256 at 39.994 kb on - strand, within BACOVA_00256 at 40.023 kb on - strand, within BACOVA_00256 at 40.146 kb on - strand at 40.186 kb on + strand at 40.187 kb on - strand at 40.187 kb on - strand at 40.187 kb on - strand at 40.187 kb on - strand at 40.265 kb on + strand at 40.272 kb on + strand at 40.272 kb on + strand at 40.289 kb on + strand at 40.359 kb on + strand at 40.360 kb on - strand at 40.360 kb on - strand at 40.360 kb on - strand at 40.360 kb on - strand at 40.365 kb on + strand at 40.385 kb on + strand at 40.385 kb on + strand at 40.388 kb on + strand at 40.410 kb on + strand at 40.446 kb on - strand, within BACOVA_00257 at 40.453 kb on - strand, within BACOVA_00257 at 40.453 kb on - strand, within BACOVA_00257 at 40.515 kb on + strand, within BACOVA_00257 at 40.516 kb on - strand, within BACOVA_00257 at 40.643 kb on + strand, within BACOVA_00257 at 40.644 kb on - strand, within BACOVA_00257 at 40.644 kb on - strand, within BACOVA_00257 at 40.644 kb on - strand, within BACOVA_00257 at 40.644 kb on - strand, within BACOVA_00257 at 40.647 kb on + strand, within BACOVA_00257 at 40.647 kb on + strand, within BACOVA_00257 at 40.647 kb on + strand, within BACOVA_00257 at 40.648 kb on - strand, within BACOVA_00257 at 40.648 kb on - strand, within BACOVA_00257 at 40.648 kb on - strand, within BACOVA_00257 at 40.648 kb on - strand, within BACOVA_00257 at 40.707 kb on + strand, within BACOVA_00257 at 40.707 kb on + strand, within BACOVA_00257 at 40.800 kb on + strand, within BACOVA_00257 at 40.800 kb on + strand, within BACOVA_00257 at 40.801 kb on - strand, within BACOVA_00257 at 40.801 kb on - strand, within BACOVA_00257 at 40.802 kb on + strand, within BACOVA_00257 at 40.802 kb on + strand, within BACOVA_00257 at 40.802 kb on + strand, within BACOVA_00257 at 40.802 kb on + strand, within BACOVA_00257 at 40.803 kb on - strand, within BACOVA_00257 at 40.803 kb on - strand, within BACOVA_00257 at 40.806 kb on + strand, within BACOVA_00257 at 40.827 kb on + strand, within BACOVA_00257 at 40.828 kb on - strand, within BACOVA_00257 at 40.828 kb on - strand, within BACOVA_00257 at 40.830 kb on - strand, within BACOVA_00257 at 40.830 kb on - strand, within BACOVA_00257 at 40.861 kb on - strand, within BACOVA_00257 at 40.935 kb on + strand, within BACOVA_00257 at 40.936 kb on - strand, within BACOVA_00257 at 40.939 kb on - strand, within BACOVA_00257 at 40.941 kb on + strand, within BACOVA_00257 at 40.979 kb on - strand, within BACOVA_00257 at 40.980 kb on - strand, within BACOVA_00257 at 40.983 kb on + strand, within BACOVA_00257 at 40.984 kb on - strand, within BACOVA_00257 at 41.115 kb on + strand, within BACOVA_00257 at 41.179 kb on + strand, within BACOVA_00257 at 41.180 kb on - strand, within BACOVA_00257 at 41.184 kb on + strand, within BACOVA_00257 at 41.184 kb on + strand, within BACOVA_00257 at 41.184 kb on + strand, within BACOVA_00257 at 41.185 kb on - strand, within BACOVA_00257 at 41.185 kb on - strand, within BACOVA_00257 at 41.185 kb on - strand, within BACOVA_00257 at 41.217 kb on + strand, within BACOVA_00257 at 41.218 kb on - strand, within BACOVA_00257 at 41.231 kb on + strand, within BACOVA_00257
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 37,294 + -1.2 37,294 + -2.0 37,295 - -1.3 37,295 - -2.0 37,295 - -1.5 37,297 - +2.2 37,297 - +1.2 37,363 - BACOVA_00255 0.15 -1.2 37,379 + BACOVA_00255 0.16 +0.3 37,380 - BACOVA_00255 0.17 -0.7 37,434 + BACOVA_00255 0.22 +1.2 37,435 - BACOVA_00255 0.23 -0.8 37,443 + BACOVA_00255 0.23 +0.3 37,443 + BACOVA_00255 0.23 -0.8 37,499 + BACOVA_00255 0.30 +1.3 37,500 - BACOVA_00255 0.30 -0.8 37,522 - BACOVA_00255 0.32 +0.0 37,523 + BACOVA_00255 0.32 -0.0 37,523 + BACOVA_00255 0.32 +1.3 37,524 - BACOVA_00255 0.32 +1.1 37,524 - BACOVA_00255 0.32 +0.6 37,542 + BACOVA_00255 0.34 -0.5 37,543 - BACOVA_00255 0.35 -0.8 37,543 - BACOVA_00255 0.35 -1.3 37,543 - BACOVA_00255 0.35 -0.4 37,543 - BACOVA_00255 0.35 +0.8 37,544 + BACOVA_00255 0.35 -0.9 37,613 - BACOVA_00255 0.42 +0.5 37,664 + BACOVA_00255 0.48 +0.8 37,664 + BACOVA_00255 0.48 -0.4 37,664 + BACOVA_00255 0.48 -1.0 37,665 - BACOVA_00255 0.48 -0.1 37,665 - BACOVA_00255 0.48 +2.1 37,666 + BACOVA_00255 0.48 -1.4 37,667 - BACOVA_00255 0.48 +2.3 37,667 - BACOVA_00255 0.48 -0.7 37,667 - BACOVA_00255 0.48 +0.3 37,672 - BACOVA_00255 0.49 -0.1 37,672 - BACOVA_00255 0.49 -0.9 37,672 - BACOVA_00255 0.49 -0.2 37,767 + BACOVA_00255 0.59 -1.5 37,833 - BACOVA_00255 0.67 -2.0 37,846 - BACOVA_00255 0.68 +3.3 37,850 + BACOVA_00255 0.69 +0.6 37,850 + BACOVA_00255 0.69 -0.8 37,857 + BACOVA_00255 0.69 -0.7 37,857 + BACOVA_00255 0.69 +0.6 38,033 + BACOVA_00255 0.89 -1.5 38,057 - -1.5 38,057 - +0.6 38,063 + -1.9 38,080 - +0.5 38,096 - +0.3 38,096 - -0.2 38,111 + +0.8 38,115 + +0.3 38,192 + +0.2 38,197 - -1.3 38,254 - -0.1 38,254 - +0.9 38,261 + -1.2 38,261 + -1.7 38,270 + -0.2 38,271 - +1.6 38,271 - -0.4 38,278 - +2.1 38,305 - -1.4 38,348 - -3.4 38,404 + +0.6 38,405 - -0.2 38,405 - +0.5 38,405 - -0.1 38,406 + +0.0 38,408 + +1.1 38,408 + +1.9 38,408 + -0.6 38,409 - +0.3 38,409 - -0.5 38,410 + -0.6 38,410 + -1.3 38,410 + -0.8 38,410 + -0.0 38,410 + +0.1 38,410 + -0.7 38,411 - -2.6 38,415 + +0.8 38,416 - +0.8 38,418 - -0.2 38,465 - -2.0 38,527 - BACOVA_00256 0.12 -1.5 38,537 + BACOVA_00256 0.13 +1.1 38,603 + BACOVA_00256 0.16 -1.2 38,674 + BACOVA_00256 0.20 -0.2 38,706 - BACOVA_00256 0.22 -0.3 38,838 - BACOVA_00256 0.28 +0.2 38,852 - BACOVA_00256 0.29 -0.4 38,894 + BACOVA_00256 0.31 +0.6 38,970 - BACOVA_00256 0.35 -0.1 39,008 + BACOVA_00256 0.37 +1.1 39,192 - BACOVA_00256 0.46 +1.3 39,201 - BACOVA_00256 0.46 -0.6 39,201 - BACOVA_00256 0.46 -0.2 39,253 + BACOVA_00256 0.49 -1.1 39,275 + BACOVA_00256 0.50 -1.6 39,276 - BACOVA_00256 0.50 +0.1 39,277 + BACOVA_00256 0.50 +0.2 39,303 - BACOVA_00256 0.52 -0.9 39,393 + BACOVA_00256 0.56 -1.0 39,411 - BACOVA_00256 0.57 -0.9 39,460 + BACOVA_00256 0.59 +0.6 39,461 - BACOVA_00256 0.60 -2.5 39,598 + BACOVA_00256 0.66 +1.0 39,599 - BACOVA_00256 0.66 -0.2 39,628 + BACOVA_00256 0.68 +5.7 39,629 - BACOVA_00256 0.68 -1.3 39,666 - BACOVA_00256 0.70 +0.5 39,994 - BACOVA_00256 0.86 -0.2 39,994 - BACOVA_00256 0.86 -0.3 40,023 - BACOVA_00256 0.88 -1.2 40,146 - -0.7 40,186 + +0.2 40,187 - -1.9 40,187 - -1.0 40,187 - +0.6 40,187 - -1.4 40,265 + -0.6 40,272 + -0.5 40,272 + +0.2 40,289 + +0.3 40,359 + -0.3 40,360 - -0.9 40,360 - -1.5 40,360 - +0.3 40,360 - -0.4 40,365 + -1.9 40,385 + -0.7 40,385 + +2.1 40,388 + -1.6 40,410 + -1.8 40,446 - BACOVA_00257 0.12 +1.1 40,453 - BACOVA_00257 0.12 -0.3 40,453 - BACOVA_00257 0.12 +0.7 40,515 + BACOVA_00257 0.17 -0.7 40,516 - BACOVA_00257 0.17 +0.5 40,643 + BACOVA_00257 0.26 -2.2 40,644 - BACOVA_00257 0.26 -1.3 40,644 - BACOVA_00257 0.26 -1.9 40,644 - BACOVA_00257 0.26 -0.3 40,644 - BACOVA_00257 0.26 +0.0 40,647 + BACOVA_00257 0.27 +0.1 40,647 + BACOVA_00257 0.27 +10.1 40,647 + BACOVA_00257 0.27 -0.4 40,648 - BACOVA_00257 0.27 -0.0 40,648 - BACOVA_00257 0.27 +0.1 40,648 - BACOVA_00257 0.27 -2.9 40,648 - BACOVA_00257 0.27 -0.9 40,707 + BACOVA_00257 0.31 -2.5 40,707 + BACOVA_00257 0.31 -0.1 40,800 + BACOVA_00257 0.38 +0.5 40,800 + BACOVA_00257 0.38 +0.5 40,801 - BACOVA_00257 0.38 -1.1 40,801 - BACOVA_00257 0.38 -1.2 40,802 + BACOVA_00257 0.38 -1.1 40,802 + BACOVA_00257 0.38 +0.2 40,802 + BACOVA_00257 0.38 -0.3 40,802 + BACOVA_00257 0.38 -1.7 40,803 - BACOVA_00257 0.38 -0.8 40,803 - BACOVA_00257 0.38 -1.2 40,806 + BACOVA_00257 0.38 -1.4 40,827 + BACOVA_00257 0.40 -0.5 40,828 - BACOVA_00257 0.40 -0.5 40,828 - BACOVA_00257 0.40 -0.6 40,830 - BACOVA_00257 0.40 -0.6 40,830 - BACOVA_00257 0.40 -1.5 40,861 - BACOVA_00257 0.42 -1.6 40,935 + BACOVA_00257 0.47 +2.1 40,936 - BACOVA_00257 0.48 -1.1 40,939 - BACOVA_00257 0.48 -0.3 40,941 + BACOVA_00257 0.48 -0.3 40,979 - BACOVA_00257 0.51 +1.6 40,980 - BACOVA_00257 0.51 -0.1 40,983 + BACOVA_00257 0.51 -0.5 40,984 - BACOVA_00257 0.51 +0.6 41,115 + BACOVA_00257 0.61 +0.8 41,179 + BACOVA_00257 0.65 -1.6 41,180 - BACOVA_00257 0.65 -1.3 41,184 + BACOVA_00257 0.66 -0.8 41,184 + BACOVA_00257 0.66 -0.7 41,184 + BACOVA_00257 0.66 +0.8 41,185 - BACOVA_00257 0.66 +0.3 41,185 - BACOVA_00257 0.66 -0.5 41,185 - BACOVA_00257 0.66 -1.0 41,217 + BACOVA_00257 0.68 -0.8 41,218 - BACOVA_00257 0.68 -0.9 41,231 + BACOVA_00257 0.69 -0.2
Or see this region's nucleotide sequence