Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04360 and OHPLBJKB_04361 are separated by 10 nucleotides OHPLBJKB_04361 and OHPLBJKB_04362 overlap by 43 nucleotides OHPLBJKB_04362 and OHPLBJKB_04363 are separated by 124 nucleotides
OHPLBJKB_04360: OHPLBJKB_04360 - hypothetical protein, at 18,479 to 18,709
_04360
OHPLBJKB_04361: OHPLBJKB_04361 - hypothetical protein, at 18,720 to 19,085
_04361
OHPLBJKB_04362: OHPLBJKB_04362 - IS3 family transposase IS2, at 19,043 to 19,948
_04362
OHPLBJKB_04363: OHPLBJKB_04363 - IS66 family transposase ISCro1, at 20,073 to 20,333
_04363
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 18.105 kb on - strand at 18.153 kb on + strand at 18.154 kb on - strand at 18.177 kb on - strand at 18.177 kb on - strand at 18.197 kb on - strand at 18.348 kb on + strand at 18.421 kb on - strand at 18.440 kb on + strand at 18.447 kb on - strand at 18.451 kb on - strand at 18.517 kb on + strand, within OHPLBJKB_04360 at 18.518 kb on - strand, within OHPLBJKB_04360 at 18.559 kb on + strand, within OHPLBJKB_04360 at 18.629 kb on + strand, within OHPLBJKB_04360 at 18.668 kb on + strand, within OHPLBJKB_04360 at 18.668 kb on + strand, within OHPLBJKB_04360 at 18.668 kb on + strand, within OHPLBJKB_04360 at 18.672 kb on + strand, within OHPLBJKB_04360 at 18.672 kb on + strand, within OHPLBJKB_04360 at 18.672 kb on + strand, within OHPLBJKB_04360 at 18.673 kb on - strand, within OHPLBJKB_04360 at 18.673 kb on - strand, within OHPLBJKB_04360 at 18.673 kb on - strand, within OHPLBJKB_04360 at 18.673 kb on - strand, within OHPLBJKB_04360 at 18.679 kb on + strand, within OHPLBJKB_04360 at 18.685 kb on + strand, within OHPLBJKB_04360 at 18.686 kb on - strand, within OHPLBJKB_04360 at 18.686 kb on - strand, within OHPLBJKB_04360 at 18.686 kb on - strand, within OHPLBJKB_04360 at 18.688 kb on + strand at 18.688 kb on + strand at 18.688 kb on + strand at 18.692 kb on - strand at 18.699 kb on - strand at 18.704 kb on - strand at 18.841 kb on + strand, within OHPLBJKB_04361 at 18.841 kb on + strand, within OHPLBJKB_04361 at 18.856 kb on + strand, within OHPLBJKB_04361 at 18.857 kb on - strand, within OHPLBJKB_04361 at 18.857 kb on - strand, within OHPLBJKB_04361 at 18.869 kb on + strand, within OHPLBJKB_04361 at 18.869 kb on + strand, within OHPLBJKB_04361 at 18.877 kb on - strand, within OHPLBJKB_04361 at 18.894 kb on - strand, within OHPLBJKB_04361 at 18.894 kb on - strand, within OHPLBJKB_04361 at 19.026 kb on + strand, within OHPLBJKB_04361 at 19.084 kb on - strand at 19.190 kb on - strand, within OHPLBJKB_04362 at 19.209 kb on + strand, within OHPLBJKB_04362 at 19.209 kb on + strand, within OHPLBJKB_04362 at 19.209 kb on + strand, within OHPLBJKB_04362 at 19.210 kb on - strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.238 kb on + strand, within OHPLBJKB_04362 at 19.239 kb on - strand, within OHPLBJKB_04362 at 19.239 kb on - strand, within OHPLBJKB_04362 at 19.239 kb on - strand, within OHPLBJKB_04362 at 19.239 kb on - strand, within OHPLBJKB_04362 at 19.291 kb on + strand, within OHPLBJKB_04362 at 19.291 kb on + strand, within OHPLBJKB_04362 at 19.292 kb on - strand, within OHPLBJKB_04362 at 19.292 kb on - strand, within OHPLBJKB_04362 at 19.390 kb on + strand, within OHPLBJKB_04362 at 19.390 kb on + strand, within OHPLBJKB_04362 at 19.390 kb on + strand, within OHPLBJKB_04362 at 19.390 kb on + strand, within OHPLBJKB_04362 at 19.390 kb on + strand, within OHPLBJKB_04362 at 19.390 kb on + strand, within OHPLBJKB_04362 at 19.390 kb on + strand, within OHPLBJKB_04362 at 19.391 kb on - strand, within OHPLBJKB_04362 at 19.391 kb on - strand, within OHPLBJKB_04362 at 19.558 kb on - strand, within OHPLBJKB_04362 at 19.737 kb on + strand, within OHPLBJKB_04362 at 19.772 kb on + strand, within OHPLBJKB_04362 at 19.772 kb on + strand, within OHPLBJKB_04362 at 19.772 kb on + strand, within OHPLBJKB_04362 at 19.773 kb on - strand, within OHPLBJKB_04362 at 19.773 kb on - strand, within OHPLBJKB_04362 at 19.773 kb on - strand, within OHPLBJKB_04362 at 19.781 kb on - strand, within OHPLBJKB_04362 at 19.781 kb on - strand, within OHPLBJKB_04362 at 19.841 kb on + strand, within OHPLBJKB_04362 at 19.841 kb on + strand, within OHPLBJKB_04362 at 19.841 kb on + strand, within OHPLBJKB_04362 at 19.841 kb on + strand, within OHPLBJKB_04362 at 19.842 kb on - strand, within OHPLBJKB_04362 at 19.843 kb on + strand, within OHPLBJKB_04362 at 19.843 kb on + strand, within OHPLBJKB_04362 at 19.893 kb on - strand at 19.912 kb on + strand at 19.912 kb on + strand at 19.913 kb on - strand at 19.920 kb on + strand at 19.945 kb on - strand at 19.947 kb on - strand at 19.947 kb on - strand at 19.986 kb on + strand at 20.054 kb on - strand at 20.086 kb on + strand at 20.087 kb on - strand at 20.087 kb on - strand at 20.152 kb on + strand, within OHPLBJKB_04363 at 20.152 kb on + strand, within OHPLBJKB_04363 at 20.153 kb on - strand, within OHPLBJKB_04363 at 20.153 kb on - strand, within OHPLBJKB_04363 at 20.242 kb on + strand, within OHPLBJKB_04363 at 20.243 kb on - strand, within OHPLBJKB_04363 at 20.243 kb on - strand, within OHPLBJKB_04363 at 20.243 kb on - strand, within OHPLBJKB_04363 at 20.333 kb on + strand at 20.365 kb on + strand at 20.366 kb on - strand at 20.368 kb on - strand at 20.386 kb on + strand at 20.386 kb on + strand at 20.386 kb on + strand at 20.518 kb on - strand at 20.518 kb on - strand at 20.562 kb on + strand at 20.562 kb on + strand at 20.562 kb on + strand at 20.562 kb on + strand at 20.563 kb on - strand at 20.563 kb on - strand at 20.563 kb on - strand at 20.573 kb on + strand at 20.573 kb on + strand at 20.574 kb on - strand at 20.574 kb on - strand at 20.578 kb on + strand at 20.578 kb on + strand at 20.579 kb on - strand at 20.580 kb on + strand at 20.580 kb on + strand at 20.581 kb on - strand at 20.581 kb on - strand at 20.581 kb on - strand at 20.581 kb on - strand at 20.594 kb on + strand at 20.595 kb on - strand at 20.634 kb on + strand at 20.655 kb on - strand at 20.671 kb on - strand at 20.672 kb on + strand at 20.691 kb on + strand at 20.692 kb on - strand at 20.692 kb on - strand at 20.692 kb on - strand at 20.705 kb on + strand at 20.705 kb on + strand at 20.706 kb on - strand at 20.765 kb on + strand at 20.765 kb on + strand at 20.765 kb on + strand at 20.766 kb on - strand at 20.766 kb on - strand at 20.766 kb on - strand at 20.853 kb on + strand at 20.853 kb on + strand at 20.853 kb on + strand at 20.854 kb on - strand at 20.854 kb on - strand at 20.854 kb on - strand at 20.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 18,105 - -0.8 18,153 + -1.4 18,154 - -0.0 18,177 - -0.6 18,177 - +0.4 18,197 - -0.8 18,348 + -0.8 18,421 - -0.0 18,440 + +0.6 18,447 - -0.4 18,451 - -0.0 18,517 + OHPLBJKB_04360 0.16 -0.9 18,518 - OHPLBJKB_04360 0.17 -0.8 18,559 + OHPLBJKB_04360 0.35 +0.9 18,629 + OHPLBJKB_04360 0.65 +1.1 18,668 + OHPLBJKB_04360 0.82 -1.0 18,668 + OHPLBJKB_04360 0.82 -1.0 18,668 + OHPLBJKB_04360 0.82 +0.6 18,672 + OHPLBJKB_04360 0.84 +1.0 18,672 + OHPLBJKB_04360 0.84 +1.0 18,672 + OHPLBJKB_04360 0.84 +0.9 18,673 - OHPLBJKB_04360 0.84 +0.6 18,673 - OHPLBJKB_04360 0.84 +0.4 18,673 - OHPLBJKB_04360 0.84 -1.0 18,673 - OHPLBJKB_04360 0.84 +0.4 18,679 + OHPLBJKB_04360 0.87 -0.2 18,685 + OHPLBJKB_04360 0.89 -0.0 18,686 - OHPLBJKB_04360 0.90 -0.2 18,686 - OHPLBJKB_04360 0.90 -0.1 18,686 - OHPLBJKB_04360 0.90 -0.4 18,688 + +1.0 18,688 + +0.5 18,688 + -0.7 18,692 - +0.6 18,699 - +0.2 18,704 - -1.1 18,841 + OHPLBJKB_04361 0.33 -0.0 18,841 + OHPLBJKB_04361 0.33 +0.2 18,856 + OHPLBJKB_04361 0.37 +0.6 18,857 - OHPLBJKB_04361 0.37 +0.1 18,857 - OHPLBJKB_04361 0.37 -0.8 18,869 + OHPLBJKB_04361 0.41 +1.0 18,869 + OHPLBJKB_04361 0.41 +1.0 18,877 - OHPLBJKB_04361 0.43 +0.6 18,894 - OHPLBJKB_04361 0.48 +1.6 18,894 - OHPLBJKB_04361 0.48 -0.5 19,026 + OHPLBJKB_04361 0.84 +1.0 19,084 - -1.0 19,190 - OHPLBJKB_04362 0.16 +1.4 19,209 + OHPLBJKB_04362 0.18 -1.1 19,209 + OHPLBJKB_04362 0.18 -0.2 19,209 + OHPLBJKB_04362 0.18 -0.8 19,210 - OHPLBJKB_04362 0.18 +0.4 19,238 + OHPLBJKB_04362 0.22 -0.0 19,238 + OHPLBJKB_04362 0.22 -1.1 19,238 + OHPLBJKB_04362 0.22 -0.2 19,238 + OHPLBJKB_04362 0.22 -0.6 19,238 + OHPLBJKB_04362 0.22 -0.5 19,238 + OHPLBJKB_04362 0.22 -0.5 19,238 + OHPLBJKB_04362 0.22 -0.4 19,238 + OHPLBJKB_04362 0.22 +1.0 19,238 + OHPLBJKB_04362 0.22 +0.2 19,238 + OHPLBJKB_04362 0.22 +1.7 19,239 - OHPLBJKB_04362 0.22 +0.1 19,239 - OHPLBJKB_04362 0.22 -0.1 19,239 - OHPLBJKB_04362 0.22 -0.4 19,239 - OHPLBJKB_04362 0.22 -1.4 19,291 + OHPLBJKB_04362 0.27 +0.8 19,291 + OHPLBJKB_04362 0.27 +0.2 19,292 - OHPLBJKB_04362 0.27 -0.4 19,292 - OHPLBJKB_04362 0.27 +0.2 19,390 + OHPLBJKB_04362 0.38 +0.0 19,390 + OHPLBJKB_04362 0.38 -0.8 19,390 + OHPLBJKB_04362 0.38 -0.8 19,390 + OHPLBJKB_04362 0.38 -0.8 19,390 + OHPLBJKB_04362 0.38 -0.4 19,390 + OHPLBJKB_04362 0.38 -0.0 19,390 + OHPLBJKB_04362 0.38 +1.6 19,391 - OHPLBJKB_04362 0.38 -0.6 19,391 - OHPLBJKB_04362 0.38 +0.4 19,558 - OHPLBJKB_04362 0.57 -1.4 19,737 + OHPLBJKB_04362 0.77 -1.2 19,772 + OHPLBJKB_04362 0.80 -0.8 19,772 + OHPLBJKB_04362 0.80 +1.0 19,772 + OHPLBJKB_04362 0.80 -0.1 19,773 - OHPLBJKB_04362 0.81 +1.5 19,773 - OHPLBJKB_04362 0.81 -1.0 19,773 - OHPLBJKB_04362 0.81 -0.4 19,781 - OHPLBJKB_04362 0.81 +0.1 19,781 - OHPLBJKB_04362 0.81 -0.6 19,841 + OHPLBJKB_04362 0.88 +2.0 19,841 + OHPLBJKB_04362 0.88 -0.4 19,841 + OHPLBJKB_04362 0.88 -0.0 19,841 + OHPLBJKB_04362 0.88 -0.6 19,842 - OHPLBJKB_04362 0.88 -1.9 19,843 + OHPLBJKB_04362 0.88 -1.2 19,843 + OHPLBJKB_04362 0.88 -1.4 19,893 - -0.6 19,912 + +6.3 19,912 + -0.2 19,913 - +0.2 19,920 + +0.2 19,945 - -1.2 19,947 - -0.4 19,947 - +0.6 19,986 + -1.1 20,054 - -0.6 20,086 + -0.0 20,087 - -1.7 20,087 - -1.1 20,152 + OHPLBJKB_04363 0.30 +0.2 20,152 + OHPLBJKB_04363 0.30 -0.4 20,153 - OHPLBJKB_04363 0.31 +0.0 20,153 - OHPLBJKB_04363 0.31 +0.2 20,242 + OHPLBJKB_04363 0.65 +0.6 20,243 - OHPLBJKB_04363 0.65 -0.6 20,243 - OHPLBJKB_04363 0.65 +0.4 20,243 - OHPLBJKB_04363 0.65 -0.0 20,333 + -0.8 20,365 + -0.1 20,366 - -1.6 20,368 - +0.2 20,386 + -0.2 20,386 + +0.4 20,386 + +0.2 20,518 - +0.2 20,518 - +1.4 20,562 + -0.8 20,562 + -0.6 20,562 + +0.7 20,562 + +0.4 20,563 - +1.0 20,563 - -1.7 20,563 - +0.2 20,573 + +0.6 20,573 + -1.2 20,574 - -1.6 20,574 - -1.4 20,578 + +1.5 20,578 + -0.5 20,579 - +0.2 20,580 + +0.4 20,580 + +0.7 20,581 - -0.6 20,581 - -0.2 20,581 - -0.0 20,581 - +0.3 20,594 + -0.4 20,595 - +0.3 20,634 + -0.3 20,655 - -0.3 20,671 - +0.6 20,672 + -0.6 20,691 + +0.6 20,692 - -0.0 20,692 - +1.0 20,692 - -0.4 20,705 + +0.2 20,705 + -0.6 20,706 - -1.6 20,765 + +0.2 20,765 + -0.4 20,765 + +1.1 20,766 - -1.8 20,766 - +1.1 20,766 - +0.8 20,853 + -0.5 20,853 + -0.7 20,853 + +0.2 20,854 - +1.6 20,854 - -0.0 20,854 - -0.6 20,928 - +1.4
Or see this region's nucleotide sequence