Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00790

Experiment: vio MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00789 and OHPLBJKB_00790 are separated by 49 nucleotidesOHPLBJKB_00790 and OHPLBJKB_00791 are separated by 214 nucleotides OHPLBJKB_00789: OHPLBJKB_00789 - D-erythrose-4-phosphate dehydrogenase, at 809,699 to 810,718 _00789 OHPLBJKB_00790: OHPLBJKB_00790 - Phosphoglycerate kinase, at 810,768 to 811,931 _00790 OHPLBJKB_00791: OHPLBJKB_00791 - Fructose-bisphosphate aldolase class 2, at 812,146 to 813,225 _00791 Position (kb) 810 811 812Strain fitness (log2 ratio) -2 -1 0 1at 809.789 kb on - strandat 809.846 kb on + strand, within OHPLBJKB_00789at 809.847 kb on - strand, within OHPLBJKB_00789at 809.847 kb on - strand, within OHPLBJKB_00789at 809.880 kb on + strand, within OHPLBJKB_00789at 809.929 kb on - strand, within OHPLBJKB_00789at 809.982 kb on + strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.151 kb on + strand, within OHPLBJKB_00789at 810.177 kb on + strand, within OHPLBJKB_00789at 810.198 kb on + strand, within OHPLBJKB_00789at 810.278 kb on + strand, within OHPLBJKB_00789at 810.279 kb on - strand, within OHPLBJKB_00789at 810.337 kb on + strand, within OHPLBJKB_00789at 810.338 kb on - strand, within OHPLBJKB_00789at 810.417 kb on + strand, within OHPLBJKB_00789at 810.417 kb on + strand, within OHPLBJKB_00789at 810.463 kb on - strand, within OHPLBJKB_00789at 810.520 kb on + strand, within OHPLBJKB_00789at 810.520 kb on + strand, within OHPLBJKB_00789at 810.522 kb on + strand, within OHPLBJKB_00789at 810.522 kb on + strand, within OHPLBJKB_00789at 810.555 kb on + strand, within OHPLBJKB_00789at 810.690 kb on + strandat 810.690 kb on + strandat 810.694 kb on + strandat 810.694 kb on + strandat 810.700 kb on + strandat 811.883 kb on + strandat 811.883 kb on + strandat 811.883 kb on + strandat 811.888 kb on + strandat 811.888 kb on + strandat 811.900 kb on + strandat 812.116 kb on + strandat 812.116 kb on + strandat 812.116 kb on + strandat 812.116 kb on + strandat 812.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction vio MOI10
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809,789 - +0.2
809,846 + OHPLBJKB_00789 0.14 +0.5
809,847 - OHPLBJKB_00789 0.15 -0.9
809,847 - OHPLBJKB_00789 0.15 -0.3
809,880 + OHPLBJKB_00789 0.18 +1.2
809,929 - OHPLBJKB_00789 0.23 -1.4
809,982 + OHPLBJKB_00789 0.28 -0.6
809,983 - OHPLBJKB_00789 0.28 +1.1
809,983 - OHPLBJKB_00789 0.28 -0.1
809,983 - OHPLBJKB_00789 0.28 +0.5
810,003 + OHPLBJKB_00789 0.30 +0.3
810,003 + OHPLBJKB_00789 0.30 -1.0
810,003 + OHPLBJKB_00789 0.30 -2.3
810,003 + OHPLBJKB_00789 0.30 -0.4
810,004 - OHPLBJKB_00789 0.30 +0.7
810,004 - OHPLBJKB_00789 0.30 +0.0
810,004 - OHPLBJKB_00789 0.30 -1.0
810,151 + OHPLBJKB_00789 0.44 -1.1
810,177 + OHPLBJKB_00789 0.47 +0.5
810,198 + OHPLBJKB_00789 0.49 +0.2
810,278 + OHPLBJKB_00789 0.57 -0.4
810,279 - OHPLBJKB_00789 0.57 -0.3
810,337 + OHPLBJKB_00789 0.63 +0.2
810,338 - OHPLBJKB_00789 0.63 +0.6
810,417 + OHPLBJKB_00789 0.70 -0.5
810,417 + OHPLBJKB_00789 0.70 +0.1
810,463 - OHPLBJKB_00789 0.75 +0.9
810,520 + OHPLBJKB_00789 0.80 +1.1
810,520 + OHPLBJKB_00789 0.80 -0.4
810,522 + OHPLBJKB_00789 0.81 +0.2
810,522 + OHPLBJKB_00789 0.81 -0.9
810,555 + OHPLBJKB_00789 0.84 -0.1
810,690 + -1.3
810,690 + +0.1
810,694 + +0.1
810,694 + +1.5
810,700 + +0.2
811,883 + -1.3
811,883 + -1.6
811,883 + -1.6
811,888 + -0.5
811,888 + -0.2
811,900 + +0.1
812,116 + -2.1
812,116 + -1.2
812,116 + +0.3
812,116 + -0.1
812,118 + +0.4

Or see this region's nucleotide sequence