Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00055 and OHPLBJKB_00056 are separated by 290 nucleotides OHPLBJKB_00056 and OHPLBJKB_00057 are separated by 39 nucleotides OHPLBJKB_00057 and OHPLBJKB_00058 are separated by 220 nucleotides
OHPLBJKB_00055: OHPLBJKB_00055 - hypothetical protein, at 61,827 to 62,444
_00055
OHPLBJKB_00056: OHPLBJKB_00056 - hypothetical protein, at 62,735 to 63,142
_00056
OHPLBJKB_00057: OHPLBJKB_00057 - hypothetical protein, at 63,182 to 63,559
_00057
OHPLBJKB_00058: OHPLBJKB_00058 - hypothetical protein, at 63,780 to 64,643
_00058
Position (kb) 63
64 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 62.202 kb on + strand, within OHPLBJKB_00055 at 62.227 kb on - strand, within OHPLBJKB_00055 at 62.254 kb on + strand, within OHPLBJKB_00055 at 62.255 kb on - strand, within OHPLBJKB_00055 at 62.345 kb on + strand, within OHPLBJKB_00055 at 62.346 kb on - strand, within OHPLBJKB_00055 at 62.350 kb on - strand, within OHPLBJKB_00055 at 62.350 kb on - strand, within OHPLBJKB_00055 at 62.360 kb on + strand, within OHPLBJKB_00055 at 62.361 kb on - strand, within OHPLBJKB_00055 at 62.425 kb on + strand at 62.425 kb on + strand at 62.513 kb on - strand at 62.538 kb on + strand at 62.539 kb on - strand at 62.564 kb on + strand at 62.607 kb on + strand at 62.652 kb on + strand at 62.652 kb on + strand at 62.653 kb on - strand at 62.653 kb on - strand at 62.657 kb on - strand at 62.690 kb on + strand at 62.690 kb on + strand at 62.691 kb on - strand at 62.737 kb on - strand at 62.750 kb on - strand at 62.873 kb on - strand, within OHPLBJKB_00056 at 62.875 kb on + strand, within OHPLBJKB_00056 at 62.875 kb on + strand, within OHPLBJKB_00056 at 62.876 kb on - strand, within OHPLBJKB_00056 at 62.969 kb on - strand, within OHPLBJKB_00056 at 63.029 kb on + strand, within OHPLBJKB_00056 at 63.039 kb on + strand, within OHPLBJKB_00056 at 63.039 kb on + strand, within OHPLBJKB_00056 at 63.069 kb on - strand, within OHPLBJKB_00056 at 63.130 kb on + strand at 63.131 kb on - strand at 63.184 kb on - strand at 63.238 kb on - strand, within OHPLBJKB_00057 at 63.284 kb on + strand, within OHPLBJKB_00057 at 63.285 kb on - strand, within OHPLBJKB_00057 at 63.288 kb on - strand, within OHPLBJKB_00057 at 63.350 kb on + strand, within OHPLBJKB_00057 at 63.350 kb on + strand, within OHPLBJKB_00057 at 63.353 kb on + strand, within OHPLBJKB_00057 at 63.353 kb on + strand, within OHPLBJKB_00057 at 63.353 kb on + strand, within OHPLBJKB_00057 at 63.354 kb on - strand, within OHPLBJKB_00057 at 63.354 kb on - strand, within OHPLBJKB_00057 at 63.354 kb on - strand, within OHPLBJKB_00057 at 63.434 kb on + strand, within OHPLBJKB_00057 at 63.487 kb on + strand, within OHPLBJKB_00057 at 63.527 kb on + strand at 63.608 kb on + strand at 63.768 kb on + strand at 63.768 kb on + strand at 63.768 kb on + strand at 63.768 kb on + strand at 63.769 kb on - strand at 63.769 kb on - strand at 63.782 kb on - strand at 63.789 kb on - strand at 63.863 kb on + strand at 63.911 kb on + strand, within OHPLBJKB_00058 at 63.911 kb on + strand, within OHPLBJKB_00058 at 63.912 kb on - strand, within OHPLBJKB_00058 at 63.912 kb on - strand, within OHPLBJKB_00058 at 63.958 kb on + strand, within OHPLBJKB_00058 at 63.959 kb on - strand, within OHPLBJKB_00058 at 63.959 kb on - strand, within OHPLBJKB_00058 at 64.124 kb on + strand, within OHPLBJKB_00058 at 64.220 kb on + strand, within OHPLBJKB_00058 at 64.220 kb on + strand, within OHPLBJKB_00058 at 64.220 kb on + strand, within OHPLBJKB_00058 at 64.221 kb on - strand, within OHPLBJKB_00058 at 64.221 kb on - strand, within OHPLBJKB_00058 at 64.221 kb on - strand, within OHPLBJKB_00058 at 64.427 kb on + strand, within OHPLBJKB_00058 at 64.451 kb on + strand, within OHPLBJKB_00058 at 64.452 kb on - strand, within OHPLBJKB_00058 at 64.487 kb on + strand, within OHPLBJKB_00058 at 64.488 kb on - strand, within OHPLBJKB_00058 at 64.540 kb on + strand, within OHPLBJKB_00058 at 64.540 kb on + strand, within OHPLBJKB_00058 at 64.541 kb on - strand, within OHPLBJKB_00058
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 62,202 + OHPLBJKB_00055 0.61 +0.2 62,227 - OHPLBJKB_00055 0.65 +0.3 62,254 + OHPLBJKB_00055 0.69 +0.2 62,255 - OHPLBJKB_00055 0.69 +0.8 62,345 + OHPLBJKB_00055 0.84 -0.5 62,346 - OHPLBJKB_00055 0.84 +1.2 62,350 - OHPLBJKB_00055 0.85 +0.6 62,350 - OHPLBJKB_00055 0.85 +1.1 62,360 + OHPLBJKB_00055 0.86 -0.0 62,361 - OHPLBJKB_00055 0.86 +0.4 62,425 + -0.5 62,425 + +0.5 62,513 - +7.1 62,538 + +1.1 62,539 - -0.6 62,564 + +0.2 62,607 + +1.5 62,652 + +0.8 62,652 + +0.8 62,653 - -0.0 62,653 - -0.9 62,657 - -0.6 62,690 + -0.7 62,690 + +0.5 62,691 - +0.4 62,737 - -0.7 62,750 - +0.0 62,873 - OHPLBJKB_00056 0.34 -0.5 62,875 + OHPLBJKB_00056 0.34 -1.3 62,875 + OHPLBJKB_00056 0.34 -0.8 62,876 - OHPLBJKB_00056 0.35 +1.2 62,969 - OHPLBJKB_00056 0.57 -0.6 63,029 + OHPLBJKB_00056 0.72 +0.2 63,039 + OHPLBJKB_00056 0.75 -0.4 63,039 + OHPLBJKB_00056 0.75 -0.1 63,069 - OHPLBJKB_00056 0.82 +0.3 63,130 + +0.1 63,131 - -0.0 63,184 - +0.2 63,238 - OHPLBJKB_00057 0.15 +0.4 63,284 + OHPLBJKB_00057 0.27 -0.2 63,285 - OHPLBJKB_00057 0.27 -0.0 63,288 - OHPLBJKB_00057 0.28 -1.3 63,350 + OHPLBJKB_00057 0.44 +1.4 63,350 + OHPLBJKB_00057 0.44 +1.1 63,353 + OHPLBJKB_00057 0.45 +0.5 63,353 + OHPLBJKB_00057 0.45 +0.9 63,353 + OHPLBJKB_00057 0.45 -1.1 63,354 - OHPLBJKB_00057 0.46 +1.1 63,354 - OHPLBJKB_00057 0.46 +0.0 63,354 - OHPLBJKB_00057 0.46 +0.4 63,434 + OHPLBJKB_00057 0.67 +0.2 63,487 + OHPLBJKB_00057 0.81 -0.5 63,527 + +0.0 63,608 + +0.7 63,768 + -0.0 63,768 + -1.1 63,768 + -0.2 63,768 + +0.1 63,769 - -0.5 63,769 - +0.6 63,782 - +0.5 63,789 - -1.5 63,863 + +2.1 63,911 + OHPLBJKB_00058 0.15 +0.2 63,911 + OHPLBJKB_00058 0.15 -0.9 63,912 - OHPLBJKB_00058 0.15 -0.7 63,912 - OHPLBJKB_00058 0.15 -0.3 63,958 + OHPLBJKB_00058 0.21 -1.1 63,959 - OHPLBJKB_00058 0.21 -0.4 63,959 - OHPLBJKB_00058 0.21 +0.4 64,124 + OHPLBJKB_00058 0.40 -1.1 64,220 + OHPLBJKB_00058 0.51 +0.1 64,220 + OHPLBJKB_00058 0.51 +0.1 64,220 + OHPLBJKB_00058 0.51 -0.0 64,221 - OHPLBJKB_00058 0.51 +0.7 64,221 - OHPLBJKB_00058 0.51 -1.1 64,221 - OHPLBJKB_00058 0.51 -0.4 64,427 + OHPLBJKB_00058 0.75 +0.4 64,451 + OHPLBJKB_00058 0.78 -1.5 64,452 - OHPLBJKB_00058 0.78 -1.3 64,487 + OHPLBJKB_00058 0.82 -0.7 64,488 - OHPLBJKB_00058 0.82 -0.9 64,540 + OHPLBJKB_00058 0.88 -0.3 64,540 + OHPLBJKB_00058 0.88 +0.1 64,541 - OHPLBJKB_00058 0.88 -0.3
Or see this region's nucleotide sequence