Strain Fitness in Escherichia coli ECRC101 around MCAODC_26540

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybeQ and ybeQ are separated by 234 nucleotidesybeQ and ybeL are separated by 69 nucleotidesybeL and leuS are separated by 235 nucleotides MCAODC_26530: ybeQ - Sel1-repeat-containing protein YbeQ, at 2,022,887 to 2,023,042 ybeQ MCAODC_26535: ybeQ - Sel1-repeat-containing protein YbeQ, at 2,023,277 to 2,023,864 ybeQ MCAODC_26540: ybeL - zinc ribbon-containing protein, at 2,023,934 to 2,024,416 ybeL MCAODC_26545: leuS - leucine--tRNA ligase, at 2,024,652 to 2,027,234 leuS Position (kb) 2023 2024 2025Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2022.974 kb on - strand, within ybeQat 2023.038 kb on - strandat 2023.082 kb on + strandat 2023.082 kb on + strandat 2023.082 kb on + strandat 2023.124 kb on - strandat 2023.168 kb on - strandat 2023.177 kb on + strandat 2023.232 kb on + strandat 2023.233 kb on - strandat 2023.233 kb on - strandat 2023.233 kb on - strandat 2023.233 kb on - strandat 2023.342 kb on + strand, within ybeQat 2023.343 kb on - strand, within ybeQat 2023.343 kb on - strand, within ybeQat 2023.361 kb on + strand, within ybeQat 2023.377 kb on + strand, within ybeQat 2023.378 kb on - strand, within ybeQat 2023.387 kb on + strand, within ybeQat 2023.388 kb on - strand, within ybeQat 2023.469 kb on + strand, within ybeQat 2023.526 kb on + strand, within ybeQat 2023.528 kb on + strand, within ybeQat 2023.528 kb on + strand, within ybeQat 2023.529 kb on - strand, within ybeQat 2023.529 kb on - strand, within ybeQat 2023.556 kb on + strand, within ybeQat 2023.556 kb on + strand, within ybeQat 2023.557 kb on - strand, within ybeQat 2023.557 kb on - strand, within ybeQat 2023.559 kb on - strand, within ybeQat 2023.559 kb on - strand, within ybeQat 2023.559 kb on - strand, within ybeQat 2023.571 kb on + strand, within ybeQat 2023.571 kb on + strand, within ybeQat 2023.571 kb on + strand, within ybeQat 2023.571 kb on + strand, within ybeQat 2023.572 kb on - strand, within ybeQat 2023.572 kb on - strand, within ybeQat 2023.613 kb on + strand, within ybeQat 2023.614 kb on - strand, within ybeQat 2023.614 kb on - strand, within ybeQat 2023.614 kb on - strand, within ybeQat 2023.628 kb on + strand, within ybeQat 2023.628 kb on + strand, within ybeQat 2023.628 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.630 kb on + strand, within ybeQat 2023.631 kb on - strand, within ybeQat 2023.631 kb on - strand, within ybeQat 2023.631 kb on - strand, within ybeQat 2023.631 kb on - strand, within ybeQat 2023.631 kb on - strand, within ybeQat 2023.631 kb on - strand, within ybeQat 2023.631 kb on - strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.634 kb on + strand, within ybeQat 2023.635 kb on - strand, within ybeQat 2023.636 kb on + strand, within ybeQat 2023.636 kb on + strand, within ybeQat 2023.636 kb on + strand, within ybeQat 2023.637 kb on - strand, within ybeQat 2023.637 kb on - strand, within ybeQat 2023.688 kb on - strand, within ybeQat 2023.724 kb on + strand, within ybeQat 2023.724 kb on + strand, within ybeQat 2023.726 kb on + strand, within ybeQat 2023.727 kb on - strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.739 kb on - strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.743 kb on - strand, within ybeQat 2023.743 kb on - strand, within ybeQat 2023.793 kb on + strand, within ybeQat 2023.857 kb on + strandat 2024.008 kb on - strand, within ybeLat 2024.076 kb on + strand, within ybeLat 2024.077 kb on - strand, within ybeLat 2024.220 kb on + strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.398 kb on - strandat 2024.398 kb on - strandat 2024.398 kb on - strandat 2024.445 kb on + strandat 2024.445 kb on + strandat 2024.446 kb on - strandat 2024.447 kb on + strandat 2024.448 kb on - strandat 2024.448 kb on - strandat 2024.450 kb on + strandat 2024.451 kb on - strandat 2024.451 kb on - strandat 2024.451 kb on - strandat 2024.453 kb on + strandat 2024.479 kb on + strandat 2024.479 kb on + strandat 2024.480 kb on - strandat 2024.504 kb on + strandat 2024.504 kb on + strandat 2024.504 kb on + strandat 2024.504 kb on + strandat 2024.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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2,022,974 - ybeQ MCAODC_26530 0.56 -1.7
2,023,038 - -0.7
2,023,082 + +0.7
2,023,082 + +3.1
2,023,082 + +0.2
2,023,124 - +0.2
2,023,168 - +2.3
2,023,177 + +0.1
2,023,232 + -0.1
2,023,233 - +1.2
2,023,233 - +0.5
2,023,233 - -2.2
2,023,233 - -0.1
2,023,342 + ybeQ MCAODC_26535 0.11 -0.1
2,023,343 - ybeQ MCAODC_26535 0.11 +0.7
2,023,343 - ybeQ MCAODC_26535 0.11 -1.5
2,023,361 + ybeQ MCAODC_26535 0.14 +1.2
2,023,377 + ybeQ MCAODC_26535 0.17 +0.6
2,023,378 - ybeQ MCAODC_26535 0.17 -0.0
2,023,387 + ybeQ MCAODC_26535 0.19 -1.5
2,023,388 - ybeQ MCAODC_26535 0.19 +0.1
2,023,469 + ybeQ MCAODC_26535 0.33 +0.2
2,023,526 + ybeQ MCAODC_26535 0.42 +0.4
2,023,528 + ybeQ MCAODC_26535 0.43 -1.4
2,023,528 + ybeQ MCAODC_26535 0.43 +0.8
2,023,529 - ybeQ MCAODC_26535 0.43 -0.2
2,023,529 - ybeQ MCAODC_26535 0.43 +0.2
2,023,556 + ybeQ MCAODC_26535 0.47 +0.1
2,023,556 + ybeQ MCAODC_26535 0.47 +1.2
2,023,557 - ybeQ MCAODC_26535 0.48 -1.6
2,023,557 - ybeQ MCAODC_26535 0.48 +2.6
2,023,559 - ybeQ MCAODC_26535 0.48 -1.2
2,023,559 - ybeQ MCAODC_26535 0.48 +1.0
2,023,559 - ybeQ MCAODC_26535 0.48 -1.1
2,023,571 + ybeQ MCAODC_26535 0.50 +1.3
2,023,571 + ybeQ MCAODC_26535 0.50 -0.8
2,023,571 + ybeQ MCAODC_26535 0.50 +0.3
2,023,571 + ybeQ MCAODC_26535 0.50 -0.5
2,023,572 - ybeQ MCAODC_26535 0.50 -0.4
2,023,572 - ybeQ MCAODC_26535 0.50 +0.5
2,023,613 + ybeQ MCAODC_26535 0.57 -0.6
2,023,614 - ybeQ MCAODC_26535 0.57 -1.8
2,023,614 - ybeQ MCAODC_26535 0.57 +0.1
2,023,614 - ybeQ MCAODC_26535 0.57 +1.0
2,023,628 + ybeQ MCAODC_26535 0.60 +1.2
2,023,628 + ybeQ MCAODC_26535 0.60 +0.2
2,023,628 + ybeQ MCAODC_26535 0.60 +0.6
2,023,630 + ybeQ MCAODC_26535 0.60 +0.3
2,023,630 + ybeQ MCAODC_26535 0.60 +1.2
2,023,630 + ybeQ MCAODC_26535 0.60 +0.6
2,023,630 + ybeQ MCAODC_26535 0.60 +0.5
2,023,630 + ybeQ MCAODC_26535 0.60 -2.8
2,023,630 + ybeQ MCAODC_26535 0.60 +0.2
2,023,630 + ybeQ MCAODC_26535 0.60 -0.4
2,023,630 + ybeQ MCAODC_26535 0.60 +0.6
2,023,631 - ybeQ MCAODC_26535 0.60 -0.8
2,023,631 - ybeQ MCAODC_26535 0.60 -0.1
2,023,631 - ybeQ MCAODC_26535 0.60 +0.3
2,023,631 - ybeQ MCAODC_26535 0.60 +0.4
2,023,631 - ybeQ MCAODC_26535 0.60 -0.4
2,023,631 - ybeQ MCAODC_26535 0.60 -1.7
2,023,631 - ybeQ MCAODC_26535 0.60 +0.8
2,023,634 + ybeQ MCAODC_26535 0.61 -0.7
2,023,634 + ybeQ MCAODC_26535 0.61 -1.0
2,023,634 + ybeQ MCAODC_26535 0.61 +0.8
2,023,634 + ybeQ MCAODC_26535 0.61 -0.7
2,023,634 + ybeQ MCAODC_26535 0.61 +3.0
2,023,634 + ybeQ MCAODC_26535 0.61 -0.7
2,023,634 + ybeQ MCAODC_26535 0.61 -0.4
2,023,634 + ybeQ MCAODC_26535 0.61 -0.4
2,023,635 - ybeQ MCAODC_26535 0.61 +1.2
2,023,636 + ybeQ MCAODC_26535 0.61 +0.2
2,023,636 + ybeQ MCAODC_26535 0.61 +0.8
2,023,636 + ybeQ MCAODC_26535 0.61 +0.2
2,023,637 - ybeQ MCAODC_26535 0.61 +0.0
2,023,637 - ybeQ MCAODC_26535 0.61 +0.2
2,023,688 - ybeQ MCAODC_26535 0.70 -1.8
2,023,724 + ybeQ MCAODC_26535 0.76 -0.8
2,023,724 + ybeQ MCAODC_26535 0.76 -0.8
2,023,726 + ybeQ MCAODC_26535 0.76 -0.4
2,023,727 - ybeQ MCAODC_26535 0.77 -1.5
2,023,738 + ybeQ MCAODC_26535 0.78 -2.6
2,023,738 + ybeQ MCAODC_26535 0.78 -1.1
2,023,738 + ybeQ MCAODC_26535 0.78 +0.8
2,023,738 + ybeQ MCAODC_26535 0.78 +0.1
2,023,739 - ybeQ MCAODC_26535 0.79 +0.9
2,023,742 + ybeQ MCAODC_26535 0.79 -1.6
2,023,742 + ybeQ MCAODC_26535 0.79 -0.0
2,023,742 + ybeQ MCAODC_26535 0.79 +0.3
2,023,742 + ybeQ MCAODC_26535 0.79 +2.5
2,023,743 - ybeQ MCAODC_26535 0.79 -0.1
2,023,743 - ybeQ MCAODC_26535 0.79 -2.1
2,023,793 + ybeQ MCAODC_26535 0.88 +1.1
2,023,857 + +0.8
2,024,008 - ybeL MCAODC_26540 0.15 -1.0
2,024,076 + ybeL MCAODC_26540 0.29 +0.3
2,024,077 - ybeL MCAODC_26540 0.30 +0.6
2,024,220 + ybeL MCAODC_26540 0.59 +1.3
2,024,221 - ybeL MCAODC_26540 0.59 +0.4
2,024,221 - ybeL MCAODC_26540 0.59 -0.2
2,024,221 - ybeL MCAODC_26540 0.59 +1.2
2,024,221 - ybeL MCAODC_26540 0.59 +0.0
2,024,398 - -0.2
2,024,398 - +0.8
2,024,398 - +1.8
2,024,445 + -0.6
2,024,445 + +0.6
2,024,446 - +0.7
2,024,447 + -1.2
2,024,448 - +0.9
2,024,448 - +0.6
2,024,450 + +0.7
2,024,451 - +0.3
2,024,451 - +0.2
2,024,451 - -0.1
2,024,453 + -1.0
2,024,479 + -0.0
2,024,479 + -0.8
2,024,480 - -0.5
2,024,504 + +0.2
2,024,504 + +0.0
2,024,504 + -0.8
2,024,504 + -0.2
2,024,504 + -1.2

Or see this region's nucleotide sequence