Strain Fitness in Escherichia coli ECRC101 around MCAODC_26520

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybeU and ybeT are separated by 101 nucleotidesybeT and djlB are separated by 9 nucleotidesdjlB and ybeR overlap by 4 nucleotidesybeR and ybeQ are separated by 164 nucleotides MCAODC_26510: ybeU - Uncharacterized protein YbeU, at 2,019,218 to 2,019,925 ybeU MCAODC_26515: ybeT - Sel1-repeat-containing protein YbeT, at 2,020,027 to 2,020,581 ybeT MCAODC_26520: djlB - Uncharacterized J domain-containing protein DjlB, at 2,020,591 to 2,022,018 djlB MCAODC_26525: ybeR - Uncharacterized protein YbeR, at 2,022,015 to 2,022,722 ybeR MCAODC_26530: ybeQ - Sel1-repeat-containing protein YbeQ, at 2,022,887 to 2,023,042 ybeQ Position (kb) 2020 2021 2022 2023Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2019.634 kb on - strand, within ybeUat 2019.666 kb on - strand, within ybeUat 2019.758 kb on - strand, within ybeUat 2019.786 kb on - strand, within ybeUat 2019.829 kb on - strand, within ybeUat 2019.829 kb on - strand, within ybeUat 2019.872 kb on + strandat 2020.077 kb on + strandat 2020.077 kb on + strandat 2020.149 kb on - strand, within ybeTat 2020.278 kb on + strand, within ybeTat 2020.279 kb on - strand, within ybeTat 2020.279 kb on - strand, within ybeTat 2020.291 kb on + strand, within ybeTat 2020.291 kb on + strand, within ybeTat 2020.292 kb on - strand, within ybeTat 2020.298 kb on - strand, within ybeTat 2020.354 kb on + strand, within ybeTat 2020.355 kb on - strand, within ybeTat 2020.407 kb on + strand, within ybeTat 2020.408 kb on - strand, within ybeTat 2020.446 kb on + strand, within ybeTat 2020.447 kb on - strand, within ybeTat 2020.447 kb on - strand, within ybeTat 2020.451 kb on + strand, within ybeTat 2020.452 kb on - strand, within ybeTat 2020.462 kb on + strand, within ybeTat 2020.482 kb on + strand, within ybeTat 2020.483 kb on - strand, within ybeTat 2020.496 kb on - strand, within ybeTat 2020.740 kb on + strand, within djlBat 2020.865 kb on - strand, within djlBat 2020.879 kb on + strand, within djlBat 2020.880 kb on - strand, within djlBat 2020.880 kb on - strand, within djlBat 2020.880 kb on - strand, within djlBat 2020.883 kb on + strand, within djlBat 2020.883 kb on + strand, within djlBat 2020.884 kb on - strand, within djlBat 2020.884 kb on - strand, within djlBat 2020.885 kb on + strand, within djlBat 2020.885 kb on + strand, within djlBat 2020.886 kb on - strand, within djlBat 2020.899 kb on + strand, within djlBat 2020.899 kb on + strand, within djlBat 2020.899 kb on + strand, within djlBat 2020.899 kb on + strand, within djlBat 2020.899 kb on + strand, within djlBat 2020.900 kb on - strand, within djlBat 2020.935 kb on + strand, within djlBat 2020.936 kb on - strand, within djlBat 2021.026 kb on - strand, within djlBat 2021.048 kb on + strand, within djlBat 2021.048 kb on + strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.049 kb on - strand, within djlBat 2021.107 kb on + strand, within djlBat 2021.107 kb on + strand, within djlBat 2021.107 kb on + strand, within djlBat 2021.118 kb on - strand, within djlBat 2021.153 kb on - strand, within djlBat 2021.247 kb on - strand, within djlBat 2021.252 kb on + strand, within djlBat 2021.255 kb on + strand, within djlBat 2021.255 kb on + strand, within djlBat 2021.341 kb on - strand, within djlBat 2021.342 kb on + strand, within djlBat 2021.343 kb on - strand, within djlBat 2021.411 kb on + strand, within djlBat 2021.411 kb on + strand, within djlBat 2021.412 kb on - strand, within djlBat 2021.546 kb on + strand, within djlBat 2021.623 kb on + strand, within djlBat 2021.624 kb on - strand, within djlBat 2021.645 kb on - strand, within djlBat 2021.714 kb on + strand, within djlBat 2021.715 kb on - strand, within djlBat 2021.766 kb on + strand, within djlBat 2021.779 kb on + strand, within djlBat 2021.780 kb on - strand, within djlBat 2021.822 kb on + strand, within djlBat 2021.823 kb on - strand, within djlBat 2021.902 kb on - strandat 2022.114 kb on + strand, within ybeRat 2022.121 kb on + strand, within ybeRat 2022.156 kb on - strand, within ybeRat 2022.174 kb on + strand, within ybeRat 2022.174 kb on + strand, within ybeRat 2022.188 kb on + strand, within ybeRat 2022.242 kb on - strand, within ybeRat 2022.257 kb on + strand, within ybeRat 2022.258 kb on - strand, within ybeRat 2022.260 kb on - strand, within ybeRat 2022.277 kb on - strand, within ybeRat 2022.284 kb on + strand, within ybeRat 2022.301 kb on - strand, within ybeRat 2022.327 kb on - strand, within ybeRat 2022.367 kb on + strand, within ybeRat 2022.381 kb on - strand, within ybeRat 2022.622 kb on - strand, within ybeRat 2022.804 kb on - strandat 2022.804 kb on - strandat 2022.924 kb on + strand, within ybeQat 2022.974 kb on - strand, within ybeQ

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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2,019,634 - ybeU MCAODC_26510 0.59 -0.1
2,019,666 - ybeU MCAODC_26510 0.63 -0.4
2,019,758 - ybeU MCAODC_26510 0.76 +0.9
2,019,786 - ybeU MCAODC_26510 0.80 -1.7
2,019,829 - ybeU MCAODC_26510 0.86 +1.8
2,019,829 - ybeU MCAODC_26510 0.86 +1.3
2,019,872 + -0.6
2,020,077 + +1.0
2,020,077 + +1.8
2,020,149 - ybeT MCAODC_26515 0.22 +2.6
2,020,278 + ybeT MCAODC_26515 0.45 +0.1
2,020,279 - ybeT MCAODC_26515 0.45 +0.0
2,020,279 - ybeT MCAODC_26515 0.45 -1.7
2,020,291 + ybeT MCAODC_26515 0.48 +0.3
2,020,291 + ybeT MCAODC_26515 0.48 +1.8
2,020,292 - ybeT MCAODC_26515 0.48 +2.8
2,020,298 - ybeT MCAODC_26515 0.49 -1.1
2,020,354 + ybeT MCAODC_26515 0.59 -0.6
2,020,355 - ybeT MCAODC_26515 0.59 +0.3
2,020,407 + ybeT MCAODC_26515 0.68 -1.7
2,020,408 - ybeT MCAODC_26515 0.69 -0.4
2,020,446 + ybeT MCAODC_26515 0.75 +0.5
2,020,447 - ybeT MCAODC_26515 0.76 +0.2
2,020,447 - ybeT MCAODC_26515 0.76 +0.5
2,020,451 + ybeT MCAODC_26515 0.76 +1.0
2,020,452 - ybeT MCAODC_26515 0.77 +0.6
2,020,462 + ybeT MCAODC_26515 0.78 -0.9
2,020,482 + ybeT MCAODC_26515 0.82 +0.2
2,020,483 - ybeT MCAODC_26515 0.82 +0.5
2,020,496 - ybeT MCAODC_26515 0.85 +2.8
2,020,740 + djlB MCAODC_26520 0.10 +0.6
2,020,865 - djlB MCAODC_26520 0.19 +0.1
2,020,879 + djlB MCAODC_26520 0.20 +1.0
2,020,880 - djlB MCAODC_26520 0.20 +0.5
2,020,880 - djlB MCAODC_26520 0.20 +0.3
2,020,880 - djlB MCAODC_26520 0.20 -0.8
2,020,883 + djlB MCAODC_26520 0.20 -0.4
2,020,883 + djlB MCAODC_26520 0.20 -0.2
2,020,884 - djlB MCAODC_26520 0.21 -1.2
2,020,884 - djlB MCAODC_26520 0.21 +0.2
2,020,885 + djlB MCAODC_26520 0.21 -1.3
2,020,885 + djlB MCAODC_26520 0.21 +0.3
2,020,886 - djlB MCAODC_26520 0.21 +0.8
2,020,899 + djlB MCAODC_26520 0.22 +1.5
2,020,899 + djlB MCAODC_26520 0.22 -0.6
2,020,899 + djlB MCAODC_26520 0.22 -2.2
2,020,899 + djlB MCAODC_26520 0.22 +1.0
2,020,899 + djlB MCAODC_26520 0.22 -0.6
2,020,900 - djlB MCAODC_26520 0.22 +1.4
2,020,935 + djlB MCAODC_26520 0.24 +2.5
2,020,936 - djlB MCAODC_26520 0.24 +1.2
2,021,026 - djlB MCAODC_26520 0.30 -0.4
2,021,048 + djlB MCAODC_26520 0.32 -0.2
2,021,048 + djlB MCAODC_26520 0.32 +0.4
2,021,049 - djlB MCAODC_26520 0.32 -0.5
2,021,049 - djlB MCAODC_26520 0.32 +1.3
2,021,049 - djlB MCAODC_26520 0.32 -1.2
2,021,049 - djlB MCAODC_26520 0.32 +0.5
2,021,049 - djlB MCAODC_26520 0.32 +0.4
2,021,049 - djlB MCAODC_26520 0.32 -1.6
2,021,049 - djlB MCAODC_26520 0.32 +0.7
2,021,049 - djlB MCAODC_26520 0.32 -0.3
2,021,107 + djlB MCAODC_26520 0.36 +1.0
2,021,107 + djlB MCAODC_26520 0.36 +1.8
2,021,107 + djlB MCAODC_26520 0.36 +0.4
2,021,118 - djlB MCAODC_26520 0.37 -0.6
2,021,153 - djlB MCAODC_26520 0.39 +0.6
2,021,247 - djlB MCAODC_26520 0.46 -0.9
2,021,252 + djlB MCAODC_26520 0.46 -1.4
2,021,255 + djlB MCAODC_26520 0.46 +1.8
2,021,255 + djlB MCAODC_26520 0.46 +1.2
2,021,341 - djlB MCAODC_26520 0.53 -1.6
2,021,342 + djlB MCAODC_26520 0.53 -1.4
2,021,343 - djlB MCAODC_26520 0.53 -1.4
2,021,411 + djlB MCAODC_26520 0.57 -0.2
2,021,411 + djlB MCAODC_26520 0.57 +1.8
2,021,412 - djlB MCAODC_26520 0.57 +0.2
2,021,546 + djlB MCAODC_26520 0.67 +1.3
2,021,623 + djlB MCAODC_26520 0.72 +0.9
2,021,624 - djlB MCAODC_26520 0.72 +0.8
2,021,645 - djlB MCAODC_26520 0.74 +0.8
2,021,714 + djlB MCAODC_26520 0.79 -0.8
2,021,715 - djlB MCAODC_26520 0.79 +0.3
2,021,766 + djlB MCAODC_26520 0.82 +1.0
2,021,779 + djlB MCAODC_26520 0.83 -0.1
2,021,780 - djlB MCAODC_26520 0.83 -0.2
2,021,822 + djlB MCAODC_26520 0.86 +1.8
2,021,823 - djlB MCAODC_26520 0.86 -0.4
2,021,902 - +1.5
2,022,114 + ybeR MCAODC_26525 0.14 +0.2
2,022,121 + ybeR MCAODC_26525 0.15 -0.9
2,022,156 - ybeR MCAODC_26525 0.20 +0.3
2,022,174 + ybeR MCAODC_26525 0.22 +0.8
2,022,174 + ybeR MCAODC_26525 0.22 +2.5
2,022,188 + ybeR MCAODC_26525 0.24 +0.2
2,022,242 - ybeR MCAODC_26525 0.32 +2.8
2,022,257 + ybeR MCAODC_26525 0.34 +2.1
2,022,258 - ybeR MCAODC_26525 0.34 -1.6
2,022,260 - ybeR MCAODC_26525 0.35 +0.9
2,022,277 - ybeR MCAODC_26525 0.37 +0.6
2,022,284 + ybeR MCAODC_26525 0.38 +0.7
2,022,301 - ybeR MCAODC_26525 0.40 -1.0
2,022,327 - ybeR MCAODC_26525 0.44 +1.8
2,022,367 + ybeR MCAODC_26525 0.50 +2.4
2,022,381 - ybeR MCAODC_26525 0.52 +0.5
2,022,622 - ybeR MCAODC_26525 0.86 +0.4
2,022,804 - +1.5
2,022,804 - -0.8
2,022,924 + ybeQ MCAODC_26530 0.24 +0.6
2,022,974 - ybeQ MCAODC_26530 0.56 -1.7

Or see this region's nucleotide sequence